Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV30203
(516 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_07_0341 - 42855667-42855849,42855933-42855981,42856165-428562... 153 8e-38
07_01_0874 - 7261191-7261274,7262291-7262440,7262769-7262916,726... 59 2e-09
02_04_0245 + 21262645-21262754,21262851-21262997,21263100-212631... 34 0.059
12_01_0515 + 4081373-4081622,4081725-4081867,4082061-4082219,408... 29 2.2
06_03_0298 - 19272257-19273714 29 2.2
03_01_0096 + 763850-764027,764873-765189,765262-765433,765513-76... 29 2.2
02_04_0363 + 22369461-22370127,22370240-22370310,22370412-223709... 28 3.9
08_02_0016 - 11262103-11262242,11262278-11262892,11263319-112633... 27 6.8
07_03_0627 - 20061951-20062391,20062912-20062960,20063386-200638... 27 8.9
02_02_0041 + 6275636-6275749,6276659-6276695,6276927-6277036,627... 27 8.9
>01_07_0341 -
42855667-42855849,42855933-42855981,42856165-42856219,
42856290-42856410,42856495-42856532,42856612-42856675,
42856778-42856885,42857066-42857187,42857544-42857616,
42857700-42857776,42858521-42858632
Length = 333
Score = 153 bits (371), Expect = 8e-38
Identities = 69/130 (53%), Positives = 93/130 (71%), Gaps = 1/130 (0%)
Frame = +3
Query: 93 MADKQPKNKVCIVGSGNWGSAIAKIVGRNAASLSNFEDRVTMWVYEEIIE-GKKLTEIIN 269
M + KN V ++GSGNWGS ++++ N A L +F D V MWV+EEI+ GKKL+E IN
Sbjct: 1 MENGHAKNLVAVIGSGNWGSVASRLIASNTAKLPSFHDEVRMWVFEEILPTGKKLSESIN 60
Query: 270 ETHENVKYLPGHKLPSNVVAVPDVVEAAKDADLLIFVVPHQFVRTICSTLLGKIKPTAAA 449
+ +EN KYLPG KL +NV+A PD+ A KDA++L+FV PHQFV IC L+GK++P
Sbjct: 61 QANENCKYLPGIKLGANVIADPDLENAVKDANMLVFVTPHQFVEGICKKLVGKLRPGTEG 120
Query: 450 LSLIKGFDIA 479
+SLIKG +IA
Sbjct: 121 ISLIKGMEIA 130
>07_01_0874 -
7261191-7261274,7262291-7262440,7262769-7262916,
7263136-7263259,7263452-7263653,7263743-7263848,
7263979-7264442
Length = 425
Score = 59.3 bits (137), Expect = 2e-09
Identities = 36/120 (30%), Positives = 58/120 (48%)
Frame = +3
Query: 117 KVCIVGSGNWGSAIAKIVGRNAASLSNFEDRVTMWVYEEIIEGKKLTEIINETHENVKYL 296
KV ++G G++G+A+A V A L V+M + ++++ IN +H N KYL
Sbjct: 109 KVVVLGGGSFGTAMAAQVAAKKADLE-----VSMLLRDDLV-----CRSINHSHINCKYL 158
Query: 297 PGHKLPSNVVAVPDVVEAAKDADLLIFVVPHQFVRTICSTLLGKIKPTAAALSLIKGFDI 476
H+LP N+ A +A AD VP QF + + + P +SL KG ++
Sbjct: 159 RDHRLPENITATTSASDALAGADFCFHAVPVQFSSSFLEGISTHVDPKLPFISLSKGLEL 218
>02_04_0245 +
21262645-21262754,21262851-21262997,21263100-21263156,
21263256-21263442,21264700-21264925,21265474-21266003
Length = 418
Score = 34.3 bits (75), Expect = 0.059
Identities = 14/38 (36%), Positives = 19/38 (50%)
Frame = +3
Query: 75 DCNILDMADKQPKNKVCIVGSGNWGSAIAKIVGRNAAS 188
DC +L MAD ++G W S +A+ VG A S
Sbjct: 152 DCTVLTMADDSTIKAKVVIGCDGWNSVVARYVGLGAPS 189
>12_01_0515 +
4081373-4081622,4081725-4081867,4082061-4082219,
4082339-4082518,4082616-4082845,4082959-4083099,
4083366-4083420
Length = 385
Score = 29.1 bits (62), Expect = 2.2
Identities = 10/34 (29%), Positives = 20/34 (58%)
Frame = -3
Query: 514 IICDIRSMPPPSAISNPLIKDRAAAVGFIFPSKV 413
++ ++ +PPP + P++ +RA G +FP V
Sbjct: 67 VVALLKPLPPPKTVRYPVLFERAWGFGRLFPCDV 100
>06_03_0298 - 19272257-19273714
Length = 485
Score = 29.1 bits (62), Expect = 2.2
Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 3/43 (6%)
Frame = +3
Query: 111 KNKVCIVGSGNWGSAIAKIVGRNAASLSNFEDRVTM---WVYE 230
K KVC+VG G G A A+ + R +S E R + W+Y+
Sbjct: 2 KKKVCVVGGGLVGLAAARELQREGHDVSVLEQRGGVGGQWLYD 44
>03_01_0096 +
763850-764027,764873-765189,765262-765433,765513-765586,
765658-765835,765917-766026,766122-766221,766305-766391,
766505-766681,766847-767120,767201-767362,767450-767665,
767744-767781,768044-768102,768214-768339,768415-768540,
768642-768695,768789-768851,768924-768986,769079-769141,
769232-769732
Length = 1045
Score = 29.1 bits (62), Expect = 2.2
Identities = 14/45 (31%), Positives = 27/45 (60%)
Frame = +3
Query: 156 IAKIVGRNAASLSNFEDRVTMWVYEEIIEGKKLTEIINETHENVK 290
++K++G ++ ED + + YEE+ + KKL I+ ET N++
Sbjct: 366 LSKMIGAVQTLVAQCED-LKLKYYEEMAKRKKLHNIVEETKGNIR 409
>02_04_0363 +
22369461-22370127,22370240-22370310,22370412-22370978,
22371056-22371301
Length = 516
Score = 28.3 bits (60), Expect = 3.9
Identities = 14/51 (27%), Positives = 27/51 (52%), Gaps = 3/51 (5%)
Frame = +3
Query: 90 DMADKQPKNKVCIVGSGNWGSAIAKIVGRNAASLSNFE---DRVTMWVYEE 233
D+ + KVC++G+G G A A+ + R +++ E D W+Y++
Sbjct: 7 DVGKPRASRKVCVIGAGMAGLAAARELRREGHAVTVLEQAGDVGGQWLYDD 57
>08_02_0016 -
11262103-11262242,11262278-11262892,11263319-11263397,
11263466-11263612
Length = 326
Score = 27.5 bits (58), Expect = 6.8
Identities = 19/80 (23%), Positives = 35/80 (43%)
Frame = +3
Query: 132 GSGNWGSAIAKIVGRNAASLSNFEDRVTMWVYEEIIEGKKLTEIINETHENVKYLPGHKL 311
G WG I + G + + +S + +W +++ E +++ + E KY P H+
Sbjct: 174 GKKKWGMKIGRSKGGDKSKISTGD----LWKAQQLKEYRRIHGLCFRCGE--KYSPNHQC 227
Query: 312 PSNVVAVPDVVEAAKDADLL 371
A +VVE D+L
Sbjct: 228 AQIPAAQVNVVETIDHTDVL 247
>07_03_0627 -
20061951-20062391,20062912-20062960,20063386-20063851,
20063933-20064139,20064267-20064405,20065146-20065282,
20065414-20065657,20065808-20065969,20066049-20066167,
20066240-20066314,20066327-20066500,20066607-20066769,
20067211-20067420,20067515-20067668,20067761-20067839,
20067999-20068146,20068501-20068671,20068771-20069385
Length = 1250
Score = 27.1 bits (57), Expect = 8.9
Identities = 18/47 (38%), Positives = 25/47 (53%), Gaps = 3/47 (6%)
Frame = -3
Query: 187 LAAFRPTIFAIAEPQ--FPDPTMQTLF-FGCLSAISKILQSRTKYLN 56
+ A PTIFAI E Q +PD + L GC S +K + +YL+
Sbjct: 781 IVANNPTIFAIREAQLLWPDTRIDCLVSIGCGSVPTKSRRGGWRYLD 827
>02_02_0041 +
6275636-6275749,6276659-6276695,6276927-6277036,
6277113-6277212,6277298-6277384,6277771-6278018,
6278178-6278231
Length = 249
Score = 27.1 bits (57), Expect = 8.9
Identities = 17/48 (35%), Positives = 26/48 (54%)
Frame = +3
Query: 132 GSGNWGSAIAKIVGRNAASLSNFEDRVTMWVYEEIIEGKKLTEIINET 275
G N ++K+VG A + ED + + YEE+ + KKL I+ ET
Sbjct: 102 GHANAVPELSKMVGAVQALVVQCED-LKLKYYEEMPKRKKLHNIVEET 148
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,508,100
Number of Sequences: 37544
Number of extensions: 199258
Number of successful extensions: 631
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 620
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 630
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1118831240
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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