Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV30203
(516 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_50623| Best HMM Match : NAD_Gly3P_dh_C (HMM E-Value=0) 120 5e-28
SB_49139| Best HMM Match : No HMM Matches (HMM E-Value=.) 93 1e-19
SB_38574| Best HMM Match : WW (HMM E-Value=4.9) 28 5.3
SB_22742| Best HMM Match : ubiquitin (HMM E-Value=0.01) 27 6.9
SB_47883| Best HMM Match : F5_F8_type_C (HMM E-Value=1.4e-14) 27 6.9
SB_18632| Best HMM Match : Nitrophorin (HMM E-Value=0.67) 27 9.2
SB_59350| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.2
SB_59066| Best HMM Match : PRA-PH (HMM E-Value=5.9) 27 9.2
SB_29257| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.2
>SB_50623| Best HMM Match : NAD_Gly3P_dh_C (HMM E-Value=0)
Length = 358
Score = 120 bits (290), Expect = 5e-28
Identities = 55/98 (56%), Positives = 73/98 (74%), Gaps = 1/98 (1%)
Frame = +3
Query: 102 KQPKNKVCIVGSGNWGSAIAKIVGRNAASLSN-FEDRVTMWVYEEIIEGKKLTEIINETH 278
++ + +V I+GSGNWGS IA+IVG+N ++ F + V M+ YEE+++G KLTEIIN H
Sbjct: 3 EEGRKRVAIIGSGNWGSVIARIVGQNVKEHNDVFFEGVEMYTYEELVDGVKLTEIINTKH 62
Query: 279 ENVKYLPGHKLPSNVVAVPDVVEAAKDADLLIFVVPHQ 392
NVKYLP +P N+ A PDVVE KDAD+L+FVVPHQ
Sbjct: 63 MNVKYLPDFLIPENIHANPDVVECVKDADILVFVVPHQ 100
>SB_49139| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 772
Score = 93.1 bits (221), Expect = 1e-19
Identities = 55/134 (41%), Positives = 78/134 (58%), Gaps = 1/134 (0%)
Frame = +3
Query: 117 KVCIVGSGNWGSAIAKIVGRNAASLSN-FEDRVTMWVYEEIIEGKKLTEIINETHENVKY 293
KV ++GSGNWG+AIA+I+G N + F ++V M+VY+ +I G+KL+EIIN HENVK
Sbjct: 229 KVTVLGSGNWGTAIARIIGDNVRKKPHLFHNKVQMYVYDSLINGRKLSEIINTEHENVKD 288
Query: 294 LPGHKLPSNVVAVPDVVEAAKDADLLIFVVPHQFVRTICSTLLGKIKPTAAALSLIKGFD 473
LPG K+P NV F+ ++C + IKP A+SLIKG D
Sbjct: 289 LPGFKIPPNV-----------------------FLDSVCQKIKSSIKPDVLAISLIKGLD 325
Query: 474 IAEGGGIDLISHII 515
+ G+ L+S+ I
Sbjct: 326 HRK-KGLHLVSNQI 338
>SB_38574| Best HMM Match : WW (HMM E-Value=4.9)
Length = 256
Score = 27.9 bits (59), Expect = 5.3
Identities = 13/40 (32%), Positives = 18/40 (45%)
Frame = +3
Query: 387 HQFVRTICSTLLGKIKPTAAALSLIKGFDIAEGGGIDLIS 506
H+ C + +IKP +IKGF I G +L S
Sbjct: 191 HERRNIACQRFVSRIKPENPLFPIIKGFHITHDSGYNLRS 230
>SB_22742| Best HMM Match : ubiquitin (HMM E-Value=0.01)
Length = 792
Score = 27.5 bits (58), Expect = 6.9
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = +3
Query: 81 NILDMADKQPKNKVCIVGSGNWGSAIAKIV 170
+++DMAD+ K C+ SGN + I I+
Sbjct: 348 DLIDMADRYNKTPFCLAKSGNADNTIISIL 377
>SB_47883| Best HMM Match : F5_F8_type_C (HMM E-Value=1.4e-14)
Length = 265
Score = 27.5 bits (58), Expect = 6.9
Identities = 16/49 (32%), Positives = 23/49 (46%)
Frame = -2
Query: 470 KSLNQRQSSCSWLYFSKQSRADSSDKLMRHHKY*KISIFCSFNYIWNSN 324
KS N C W Y ++ R + + R H+ KI IF N++W N
Sbjct: 217 KSHNYTIFLCLWGY-ARGLRPRLAPLIYRRHQNRKIFIFHEGNFVWQPN 264
>SB_18632| Best HMM Match : Nitrophorin (HMM E-Value=0.67)
Length = 258
Score = 27.1 bits (57), Expect = 9.2
Identities = 18/46 (39%), Positives = 24/46 (52%)
Frame = +3
Query: 291 YLPGHKLPSNVVAVPDVVEAAKDADLLIFVVPHQFVRTICSTLLGK 428
YL G KL + V + A DADL I QFV+T + L+G+
Sbjct: 80 YLLGDKLQRSGYTV---LHAPGDADLAIVETAIQFVKTTTTALVGE 122
>SB_59350| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 987
Score = 27.1 bits (57), Expect = 9.2
Identities = 18/46 (39%), Positives = 24/46 (52%)
Frame = +3
Query: 291 YLPGHKLPSNVVAVPDVVEAAKDADLLIFVVPHQFVRTICSTLLGK 428
YL G KL + V + A DADL I QFV+T + L+G+
Sbjct: 367 YLLGDKLQRSGYTV---LHAPGDADLAIVETAIQFVKTTTTALVGE 409
>SB_59066| Best HMM Match : PRA-PH (HMM E-Value=5.9)
Length = 199
Score = 27.1 bits (57), Expect = 9.2
Identities = 18/46 (39%), Positives = 24/46 (52%)
Frame = +3
Query: 291 YLPGHKLPSNVVAVPDVVEAAKDADLLIFVVPHQFVRTICSTLLGK 428
YL G KL + V + A DADL I QFV+T + L+G+
Sbjct: 127 YLLGDKLQRSGYTV---LHAPGDADLAIVETAIQFVKTTTTALVGE 169
>SB_29257| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 494
Score = 27.1 bits (57), Expect = 9.2
Identities = 21/90 (23%), Positives = 38/90 (42%)
Frame = +3
Query: 126 IVGSGNWGSAIAKIVGRNAASLSNFEDRVTMWVYEEIIEGKKLTEIINETHENVKYLPGH 305
+VGS I + N + + +++T+W + I+E L E + + L
Sbjct: 150 LVGSVWTKEDIKHLTSPNLLKMIHHTNKITVWFEKSIVEMSNLEERVAVLTRIIDILTVF 209
Query: 306 KLPSNVVAVPDVVEAAKDADLLIFVVPHQF 395
+ +N + +VV A A IF + H F
Sbjct: 210 QELNNFNGILEVVSALNSAP--IFRLQHTF 237
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,017,122
Number of Sequences: 59808
Number of extensions: 220979
Number of successful extensions: 600
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 591
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 598
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1148326654
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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