Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30203
         (516 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z22180-1|CAA80176.2|  371|Caenorhabditis elegans Hypothetical pr...   165   2e-41
Z22180-2|CAD54146.1|  392|Caenorhabditis elegans Hypothetical pr...   156   8e-39
Z22180-10|CAO82052.1|  360|Caenorhabditis elegans Hypothetical p...   153   9e-38
Z99171-3|CAB16310.1|  374|Caenorhabditis elegans Hypothetical pr...   112   2e-25
Z22180-9|CAO82051.1|  304|Caenorhabditis elegans Hypothetical pr...    97   7e-21
Z93394-4|CAD59168.1|  193|Caenorhabditis elegans Hypothetical pr...    27   8.0  
Z93394-3|CAD59167.1|  228|Caenorhabditis elegans Hypothetical pr...    27   8.0  
Z81044-12|CAB02811.2|  527|Caenorhabditis elegans Hypothetical p...    27   8.0  
Z69794-4|CAA93678.3|  654|Caenorhabditis elegans Hypothetical pr...    27   8.0  
U61944-5|AAB03121.2|  482|Caenorhabditis elegans Hypothetical pr...    27   8.0  
AY494975-1|AAR87492.1|  486|Caenorhabditis elegans collagen/olfa...    27   8.0  
AF000262-4|AAN60526.2|  486|Caenorhabditis elegans Colmedin (col...    27   8.0  

>Z22180-1|CAA80176.2|  371|Caenorhabditis elegans Hypothetical
           protein K11H3.1a protein.
          Length = 371

 Score =  165 bits (401), Expect = 2e-41
 Identities = 82/154 (53%), Positives = 107/154 (69%), Gaps = 1/154 (0%)
 Frame = +3

Query: 57  FKYFVRDCNILDMADKQPKNKVCIVGSGNWGSAIAKIVGRNAASLSN-FEDRVTMWVYEE 233
           F+YF     I  M+ K    KV I+GSGNWGSAIA+IVG    S  + F+  V MWV+EE
Sbjct: 9   FRYFGTTSTIATMSPK----KVTIIGSGNWGSAIARIVGSTTKSFPDEFDPTVRMWVFEE 64

Query: 234 IIEGKKLTEIINETHENVKYLPGHKLPSNVVAVPDVVEAAKDADLLIFVVPHQFVRTICS 413
           I+ G+KL+E+IN  HEN+KYLPG  LP+NVVAV D+VE+ + +++L+FVVPHQFV+ IC 
Sbjct: 65  IVNGEKLSEVINNRHENIKYLPGKVLPNNVVAVTDLVESCEGSNVLVFVVPHQFVKGICE 124

Query: 414 TLLGKIKPTAAALSLIKGFDIAEGGGIDLISHII 515
            L+GKI     A+SLIKG    + GG+ LIS  I
Sbjct: 125 KLVGKIPADTQAISLIKGVSTEKRGGLKLISEEI 158


>Z22180-2|CAD54146.1|  392|Caenorhabditis elegans Hypothetical
           protein K11H3.1b protein.
          Length = 392

 Score =  156 bits (379), Expect = 8e-39
 Identities = 76/138 (55%), Positives = 99/138 (71%), Gaps = 1/138 (0%)
 Frame = +3

Query: 57  FKYFVRDCNILDMADKQPKNKVCIVGSGNWGSAIAKIVGRNAASLSN-FEDRVTMWVYEE 233
           F+YF     I  M+ K    KV I+GSGNWGSAIA+IVG    S  + F+  V MWV+EE
Sbjct: 21  FRYFGTTSTIATMSPK----KVTIIGSGNWGSAIARIVGSTTKSFPDEFDPTVRMWVFEE 76

Query: 234 IIEGKKLTEIINETHENVKYLPGHKLPSNVVAVPDVVEAAKDADLLIFVVPHQFVRTICS 413
           I+ G+KL+E+IN  HEN+KYLPG  LP+NVVAV D+VE+ + +++L+FVVPHQFV+ IC 
Sbjct: 77  IVNGEKLSEVINNRHENIKYLPGKVLPNNVVAVTDLVESCEGSNVLVFVVPHQFVKGICE 136

Query: 414 TLLGKIKPTAAALSLIKG 467
            L+GKI     A+SLIKG
Sbjct: 137 KLVGKIPADTQAISLIKG 154


>Z22180-10|CAO82052.1|  360|Caenorhabditis elegans Hypothetical
           protein K11H3.1d protein.
          Length = 360

 Score =  153 bits (370), Expect = 9e-38
 Identities = 72/121 (59%), Positives = 93/121 (76%), Gaps = 1/121 (0%)
 Frame = +3

Query: 108 PKNKVCIVGSGNWGSAIAKIVGRNAASLSN-FEDRVTMWVYEEIIEGKKLTEIINETHEN 284
           PK KV I+GSGNWGSAIA+IVG    S  + F+  V MWV+EEI+ G+KL+E+IN  HEN
Sbjct: 3   PK-KVTIIGSGNWGSAIARIVGSTTKSFPDEFDPTVRMWVFEEIVNGEKLSEVINNRHEN 61

Query: 285 VKYLPGHKLPSNVVAVPDVVEAAKDADLLIFVVPHQFVRTICSTLLGKIKPTAAALSLIK 464
           +KYLPG  LP+NVVAV D+VE+ + +++L+FVVPHQFV+ IC  L+GKI     A+SLIK
Sbjct: 62  IKYLPGKVLPNNVVAVTDLVESCEGSNVLVFVVPHQFVKGICEKLVGKIPADTQAISLIK 121

Query: 465 G 467
           G
Sbjct: 122 G 122


>Z99171-3|CAB16310.1|  374|Caenorhabditis elegans Hypothetical
           protein F47G4.3 protein.
          Length = 374

 Score =  112 bits (269), Expect = 2e-25
 Identities = 59/135 (43%), Positives = 81/135 (60%), Gaps = 5/135 (3%)
 Frame = +3

Query: 111 KNKVCIVGSGNWGSAIAKIVGRNAASLSN-FEDRVTMWVYEEIIEGK---KLTEIINETH 278
           + K+ IVG GNWGSAIA +VG+   +    F+  V++W  +    G     + E IN TH
Sbjct: 21  RKKIAIVGGGNWGSAIACVVGKTVKAQDEVFQPIVSIWCRDSRKPGDLSPSIAETINSTH 80

Query: 279 ENVKYLPGHKLPSNVVAVPDVVEAAKDADLLIFVVPHQFVRTICSTLLGKIKPTAAALSL 458
           EN KYLPG ++P NVVA   ++EA + A +LI VVPHQ +  IC  L GK++  A A+SL
Sbjct: 81  ENPKYLPGRRIPDNVVATSSLLEACQSAHILILVVPHQGIPQICDELRGKLQKGAHAISL 140

Query: 459 IKGFDIA-EGGGIDL 500
            KG   + E G I +
Sbjct: 141 TKGISSSCENGEIKM 155


>Z22180-9|CAO82051.1|  304|Caenorhabditis elegans Hypothetical
           protein K11H3.1c protein.
          Length = 304

 Score = 97.1 bits (231), Expect = 7e-21
 Identities = 45/73 (61%), Positives = 56/73 (76%), Gaps = 1/73 (1%)
 Frame = +3

Query: 108 PKNKVCIVGSGNWGSAIAKIVGRNAASLSN-FEDRVTMWVYEEIIEGKKLTEIINETHEN 284
           PK KV I+GSGNWGSAIA+IVG    S  + F+  V MWV+EEI+ G+KL+E+IN  HEN
Sbjct: 3   PK-KVTIIGSGNWGSAIARIVGSTTKSFPDEFDPTVRMWVFEEIVNGEKLSEVINNRHEN 61

Query: 285 VKYLPGHKLPSNV 323
           +KYLPG  LP+NV
Sbjct: 62  IKYLPGKVLPNNV 74


>Z93394-4|CAD59168.1|  193|Caenorhabditis elegans Hypothetical
           protein Y48E1C.4b protein.
          Length = 193

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 10/34 (29%), Positives = 20/34 (58%)
 Frame = -3

Query: 241 SIISSYTHIVTLSSKFDRLAAFRPTIFAIAEPQF 140
           ++ S  +  +T++S++  LA  +PT+ A   P F
Sbjct: 2   NLASRVSGFLTMTSRYSSLATLKPTVAAALAPNF 35


>Z93394-3|CAD59167.1|  228|Caenorhabditis elegans Hypothetical
           protein Y48E1C.4a protein.
          Length = 228

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 10/34 (29%), Positives = 20/34 (58%)
 Frame = -3

Query: 241 SIISSYTHIVTLSSKFDRLAAFRPTIFAIAEPQF 140
           ++ S  +  +T++S++  LA  +PT+ A   P F
Sbjct: 2   NLASRVSGFLTMTSRYSSLATLKPTVAAALAPNF 35


>Z81044-12|CAB02811.2|  527|Caenorhabditis elegans Hypothetical
           protein C30H6.5 protein.
          Length = 527

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 12/36 (33%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
 Frame = -2

Query: 515 NNM*YK-IDATTFGYIKSLNQRQSSCSWLYFSKQSR 411
           NN  Y   DAT  G ++ L   +S CSW +  ++ +
Sbjct: 424 NNSIYNSFDATIVGGLQDLESCESECSWSHIRRREK 459


>Z69794-4|CAA93678.3|  654|Caenorhabditis elegans Hypothetical
           protein R03G8.3 protein.
          Length = 654

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 26/113 (23%), Positives = 49/113 (43%), Gaps = 1/113 (0%)
 Frame = +3

Query: 150 SAIAKIVGRNAASL-SNFEDRVTMWVYEEIIEGKKLTEIINETHENVKYLPGHKLPSNVV 326
           + +  ++  NA  + ++F+ R TM      ++  K     N T  +   +PG K  S + 
Sbjct: 450 TGLLNVMRENAQKIQTHFDTRATM------LDILKYQSASNFTDLDPLIIPGEKGYSYIR 503

Query: 327 AVPDVVEAAKDADLLIFVVPHQFVRTICSTLLGKIKPTAAALSLIKGFDIAEG 485
             PD++   ++  + +     QF +T  ST     K    A++L    +I EG
Sbjct: 504 TQPDILRNCRNMPIPMQYCICQFNKTQVSTKSETAKGVGEAVALAVNNEIEEG 556


>U61944-5|AAB03121.2|  482|Caenorhabditis elegans Hypothetical
           protein T12E12.1 protein.
          Length = 482

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = +2

Query: 146 GFCYCENCWSKCCES 190
           G C+CE+CW    ES
Sbjct: 146 GHCFCEHCWKSHVES 160


>AY494975-1|AAR87492.1|  486|Caenorhabditis elegans
           collagen/olfactomedin domain containingprotein 2
           protein.
          Length = 486

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 12/28 (42%), Positives = 20/28 (71%), Gaps = 1/28 (3%)
 Frame = -2

Query: 185 RSISTNNFRNSRT-PVSRSNDANFVLWL 105
           +S++  NFR+ R  P+SR  +A+ +LWL
Sbjct: 35  QSLTELNFRSKRDIPLSRGKNASDILWL 62


>AF000262-4|AAN60526.2|  486|Caenorhabditis elegans Colmedin
           (collagen plus olfactomedin)family protein 2 protein.
          Length = 486

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 12/28 (42%), Positives = 20/28 (71%), Gaps = 1/28 (3%)
 Frame = -2

Query: 185 RSISTNNFRNSRT-PVSRSNDANFVLWL 105
           +S++  NFR+ R  P+SR  +A+ +LWL
Sbjct: 35  QSLTELNFRSKRDIPLSRGKNASDILWL 62


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,899,772
Number of Sequences: 27780
Number of extensions: 176909
Number of successful extensions: 654
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 632
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 649
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 996506972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)