Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30203
         (516 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phospha...   237   6e-65
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    26   0.20 
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    23   2.5  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    23   2.5  
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    23   2.5  

>AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phosphate
           dehydrogenase protein.
          Length = 363

 Score =  237 bits (579), Expect = 6e-65
 Identities = 108/135 (80%), Positives = 121/135 (89%)
 Frame = +3

Query: 111 KNKVCIVGSGNWGSAIAKIVGRNAASLSNFEDRVTMWVYEEIIEGKKLTEIINETHENVK 290
           K ++CIVGSGNWGS IAKI+G NAA+ SNFEDRVTM+VYEEII GKKLTEIINETHENVK
Sbjct: 4   KLRICIVGSGNWGSTIAKIIGINAANFSNFEDRVTMYVYEEIINGKKLTEIINETHENVK 63

Query: 291 YLPGHKLPSNVVAVPDVVEAAKDADLLIFVVPHQFVRTICSTLLGKIKPTAAALSLIKGF 470
           YLPGHKLP N++A+PDVVEAAKDAD+L FVVPHQF++ ICS L GKIKPTA  LSLIKGF
Sbjct: 64  YLPGHKLPPNIIAIPDVVEAAKDADILTFVVPHQFIKRICSALFGKIKPTAIGLSLIKGF 123

Query: 471 DIAEGGGIDLISHII 515
           D  +GGGI+LISHII
Sbjct: 124 DKKQGGGIELISHII 138


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 26.2 bits (55), Expect = 0.20
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = -3

Query: 247 FPSIISSYTHIVTLSSKFDRLAAFRPTIFAIAEPQFP 137
           F S+  ++    T  S F ++ A  PT+F+   P+FP
Sbjct: 332 FWSLRKAFARKKTDYSSFGKILATEPTLFSNVTPKFP 368


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 22.6 bits (46), Expect = 2.5
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -3

Query: 250 FFPSIISSYTHIVTLSSKFDRL 185
           FF +   SY HI T S++F R+
Sbjct: 99  FFVNEKQSYFHIATTSNEFIRI 120


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 22.6 bits (46), Expect = 2.5
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -3

Query: 250 FFPSIISSYTHIVTLSSKFDRL 185
           FF +   SY HI T S++F R+
Sbjct: 99  FFVNEKQSYFHIATTSNEFIRI 120


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 22.6 bits (46), Expect = 2.5
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -3

Query: 250 FFPSIISSYTHIVTLSSKFDRL 185
           FF +   SY HI T S++F R+
Sbjct: 38  FFVNEKQSYFHIATTSNEFIRI 59


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 123,254
Number of Sequences: 438
Number of extensions: 2511
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14354847
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)