Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30203
         (516 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g40610.1 68418.m04930 glycerol-3-phosphate dehydrogenase [NAD...   151   4e-37
At2g40690.1 68415.m05020 NAD-dependent glycerol-3-phosphate dehy...    71   5e-13
At5g63910.1 68418.m08025 expressed protein                             33   0.15 
At5g66690.1 68418.m08407 UDP-glucoronosyl/UDP-glucosyl transfera...    31   0.61 
At3g50740.1 68416.m05552 UDP-glucoronosyl/UDP-glucosyl transfera...    31   0.61 
At2g17420.1 68415.m02010 thioredoxin reductase 2 / NADPH-depende...    29   1.9  
At5g07800.1 68418.m00894 flavin-containing monooxygenase family ...    27   5.7  
At5g13390.1 68418.m01542 expressed protein                             27   9.9  

>At5g40610.1 68418.m04930 glycerol-3-phosphate dehydrogenase [NAD+]
           / GPDH strong similarity to  SP|P52425
           Glycerol-3-phosphate dehydrogenase [NAD+] (EC 1.1.1.8)
           {Cuphea lanceolata}; contains Pfam profile PF01210:
           NAD-dependent glycerol-3-phosphate dehydrogenase
          Length = 400

 Score =  151 bits (365), Expect = 4e-37
 Identities = 72/136 (52%), Positives = 97/136 (71%), Gaps = 1/136 (0%)
 Frame = +3

Query: 111 KNKVCIVGSGNWGSAIAKIVGRNAASLSNFEDRVTMWVYEEII-EGKKLTEIINETHENV 287
           K+KV +VGSGNWGS  AK++  NA  L +F D V MWV+EE++  G+KL ++IN+T+ENV
Sbjct: 54  KSKVTVVGSGNWGSVAAKLIASNALKLPSFHDEVRMWVFEEVLPNGEKLNDVINKTNENV 113

Query: 288 KYLPGHKLPSNVVAVPDVVEAAKDADLLIFVVPHQFVRTICSTLLGKIKPTAAALSLIKG 467
           KYLPG KL  NVVA PD+  A KDA++L+FV PHQF+  IC  L GKI     A+SL+KG
Sbjct: 114 KYLPGIKLGRNVVADPDLENAVKDANMLVFVTPHQFMDGICKKLDGKITGDVEAISLVKG 173

Query: 468 FDIAEGGGIDLISHII 515
            ++ + G   +IS +I
Sbjct: 174 MEVKKEGPC-MISSLI 188


>At2g40690.1 68415.m05020 NAD-dependent glycerol-3-phosphate
           dehydrogenase family protein low similarity to SP|Q26756
           Glycerol-3-phosphate dehydrogenase [NAD+], glycosomal
           (EC 1.1.1.8) {Trypanosoma brucei rhodesiense}; contains
           Pfam profile PF01210: NAD-dependent glycerol-3-phosphate
           dehydrogenase
          Length = 420

 Score = 70.9 bits (166), Expect = 5e-13
 Identities = 42/120 (35%), Positives = 59/120 (49%)
 Frame = +3

Query: 117 KVCIVGSGNWGSAIAKIVGRNAASLSNFEDRVTMWVYEEIIEGKKLTEIINETHENVKYL 296
           KV ++G G++G+A+A  V R    L      V M V +  +      + INE H N KY 
Sbjct: 89  KVVVLGGGSFGTAMAAHVARRKEGLE-----VNMLVRDSFV-----CQSINENHHNCKYF 138

Query: 297 PGHKLPSNVVAVPDVVEAAKDADLLIFVVPHQFVRTICSTLLGKIKPTAAALSLIKGFDI 476
           P HKLP NV+A  D   A  DAD  +  VP QF  +    +   + P    +SL KG ++
Sbjct: 139 PEHKLPENVIATTDAKAALLDADYCLHAVPVQFSSSFLEGIADYVDPGLPFISLSKGLEL 198


>At5g63910.1 68418.m08025 expressed protein
          Length = 500

 Score = 32.7 bits (71), Expect = 0.15
 Identities = 18/55 (32%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
 Frame = +3

Query: 120 VCIVGSGNWGSAIAKIVGRNAASLSNFEDRVTMWVYEEIIEGKKLT-EIINETHE 281
           VCIVGSG  GS++A  +   + S    + ++ M+   EI+ G+  T  +  +T E
Sbjct: 38  VCIVGSGIGGSSVAHFLRNYSVSTGLNQAKILMFERHEIVGGRMRTVTVAGDTFE 92


>At5g66690.1 68418.m08407 UDP-glucoronosyl/UDP-glucosyl transferase
           family protein contains Pfam profile: PF00201
           UDP-glucoronosyl and UDP-glucosyl transferase
          Length = 481

 Score = 30.7 bits (66), Expect = 0.61
 Identities = 22/80 (27%), Positives = 37/80 (46%), Gaps = 5/80 (6%)
 Frame = +3

Query: 75  DCNILDMADKQPKNKVCIVGSGNWGSAIAKIVGRNAASLSNFEDRVTMWVYEEIIEGKKL 254
           D  +LD  ++QP   V  +  G+ G   AK +   A  L   + R  +WV    ++G   
Sbjct: 250 DHPVLDWLNEQPNESVLYISFGSGGCLSAKQLTELAWGLEQSQQRF-VWVVRPPVDGSCC 308

Query: 255 TEIINE----THENV-KYLP 299
           +E ++     T +N  +YLP
Sbjct: 309 SEYVSANGGGTEDNTPEYLP 328


>At3g50740.1 68416.m05552 UDP-glucoronosyl/UDP-glucosyl transferase
           family protein contains Pfam profile: PF00201
           UDP-glucoronosyl and UDP-glucosyl transferase
          Length = 487

 Score = 30.7 bits (66), Expect = 0.61
 Identities = 20/82 (24%), Positives = 35/82 (42%)
 Frame = +3

Query: 84  ILDMADKQPKNKVCIVGSGNWGSAIAKIVGRNAASLSNFEDRVTMWVYEEIIEGKKLTEI 263
           +LD  +KQP   V  +  G+ GS  AK +   A  L   + R  +WV    ++G   +  
Sbjct: 258 VLDWLNKQPDESVLYISFGSGGSLSAKQLTELAWGLEMSQQRF-VWVVRPPVDGSACSAY 316

Query: 264 INETHENVKYLPGHKLPSNVVA 329
           ++     ++      LP   V+
Sbjct: 317 LSANSGKIRDGTPDYLPEGFVS 338


>At2g17420.1 68415.m02010 thioredoxin reductase 2 / NADPH-dependent
           thioredoxin reductase 2 (NTR2) identical to SP|Q39242
          Length = 330

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 26/79 (32%), Positives = 35/79 (44%)
 Frame = +3

Query: 111 KNKVCIVGSGNWGSAIAKIVGRNAASLSNFEDRVTMWVYEEIIEGKKLTEIINETHENVK 290
           K KVCIVGSG      A    R       FE     W+  +I  G +LT     T  +V+
Sbjct: 5   KTKVCIVGSGPAAHTAAIYASRAELKPLLFEG----WMANDIAPGGQLT-----TTTDVE 55

Query: 291 YLPGHKLPSNVVAVPDVVE 347
             PG   P  ++ + D+VE
Sbjct: 56  NFPG--FPEGILGI-DIVE 71


>At5g07800.1 68418.m00894 flavin-containing monooxygenase family
           protein / FMO family protein similar to
           flavin-containing monooxygenase 2 (FMO2) from Homo
           sapiens [GI:1834493]; contains Pfam profile: PF00743
           Flavin-binding monooxygenase-like
          Length = 460

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 15/52 (28%), Positives = 23/52 (44%), Gaps = 3/52 (5%)
 Frame = +3

Query: 96  ADKQPKNKVCIVGSGNWGSAIAKIV---GRNAASLSNFEDRVTMWVYEEIIE 242
           A +    KVC++G+G  G   A+ +   G     L   ED    W Y+  +E
Sbjct: 8   ASRSRSKKVCVIGAGPAGLVSARELRKEGHKVVVLEQNEDVGGQWFYQPNVE 59


>At5g13390.1 68418.m01542 expressed protein 
          Length = 1123

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = -2

Query: 176 STNNFRNSRTPVSRSNDANF 117
           ST NF +  TP SRSN++ F
Sbjct: 37  STRNFIDRATPTSRSNNSRF 56


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,311,624
Number of Sequences: 28952
Number of extensions: 163439
Number of successful extensions: 606
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 592
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 605
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 937669760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)