Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV30202
(516 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g15060.1 68417.m02314 F-box protein-related contains weak sim... 31 0.46
At5g18900.1 68418.m02245 oxidoreductase, 2OG-Fe(II) oxygenase fa... 29 2.5
At2g35640.1 68415.m04371 hydroxyproline-rich glycoprotein family... 29 2.5
At1g77300.1 68414.m09002 SET domain-containing protein similar t... 29 2.5
At1g01570.1 68414.m00074 fringe-related protein + similar to hyp... 28 4.3
At5g19080.1 68418.m02268 zinc finger (C3HC4-type RING finger) fa... 27 5.7
At4g00300.1 68417.m00037 fringe-related protein + weak similarit... 27 5.7
At1g44446.2 68414.m05114 chlorophyll a oxygenase (CAO) / chlorop... 27 5.7
At1g44446.1 68414.m05113 chlorophyll a oxygenase (CAO) / chlorop... 27 5.7
At1g12700.1 68414.m01473 helicase domain-containing protein / pe... 27 5.7
At3g58860.1 68416.m06560 F-box family protein contains F-box dom... 27 7.5
At1g04080.1 68414.m00396 hydroxyproline-rich glycoprotein family... 27 7.5
At4g01550.1 68417.m00201 no apical meristem (NAM) family protein... 27 9.9
At2g17040.1 68415.m01967 no apical meristem (NAM) family protein... 27 9.9
At2g15695.1 68415.m01797 expressed protein contains Pfam PF05705... 27 9.9
At2g15260.1 68415.m01740 zinc finger (C3HC4-type RING finger) fa... 27 9.9
At1g78260.2 68414.m09119 RNA recognition motif (RRM)-containing ... 27 9.9
At1g78260.1 68414.m09120 RNA recognition motif (RRM)-containing ... 27 9.9
At1g17970.1 68414.m02223 zinc finger (C3HC4-type RING finger) fa... 27 9.9
At1g14780.1 68414.m01767 expressed protein 27 9.9
At1g05500.1 68414.m00561 C2 domain-containing protein similar to... 27 9.9
>At4g15060.1 68417.m02314 F-box protein-related contains weak
similarity to F-box domain Pfam:PF00646
Length = 572
Score = 31.1 bits (67), Expect = 0.46
Identities = 15/35 (42%), Positives = 18/35 (51%)
Frame = +2
Query: 158 SCDRYIECINGTAEEKLCPDGLRYNPNVNFDVYPC 262
S R CI AEE L PDG+ +N N + PC
Sbjct: 25 SVKRLSLCIRVNAEEALYPDGIVFNQLENLKLCPC 59
>At5g18900.1 68418.m02245 oxidoreductase, 2OG-Fe(II) oxygenase
family protein similar to prolyl 4-hydroxylase, alpha
subunit, from Rattus norvegicus [GI:474940], Mus
musculus [SP|Q60715], Homo sapiens [GI:18073925];
contains PF03171 2OG-Fe(II) oxygenase superfamily domain
Length = 298
Score = 28.7 bits (61), Expect = 2.5
Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 3/35 (8%)
Frame = +2
Query: 104 VRPTGQCRELNE---RYPVSGSCDRYIECINGTAE 199
V P+G C ++NE R+ V G C + E + GT E
Sbjct: 252 VTPSGNCTDMNESCERWAVLGECTKNPEYMVGTTE 286
>At2g35640.1 68415.m04371 hydroxyproline-rich glycoprotein family
protein contains proline-rich extensin domains,
INTERPRO:IPR002965
Length = 340
Score = 28.7 bits (61), Expect = 2.5
Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
Frame = +1
Query: 64 DKSLPKSVPGTSTSQAYWTMQGTERKVSSV--RKLRQIY*MHQWNR*RETMP 213
++S +S T TS +YW M TERK ++ L QIY + R+T+P
Sbjct: 97 ERSRVESSFNTVTSSSYWKMDKTERKEKNLPSNMLPQIYDVLSELVDRKTLP 148
>At1g77300.1 68414.m09002 SET domain-containing protein similar to
huntingtin interacting protein 1 [Homo sapiens]
GI:12697196; contains Pfam profile PF00856: SET domain
Length = 1759
Score = 28.7 bits (61), Expect = 2.5
Identities = 17/46 (36%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Frame = +3
Query: 255 IRASTLTKCRVSNDPRYSHRNRQNCVPINSDTSN-*ATPAIAADSE 389
+R+ + R S +PRY H++ + P S TS+ ATP A+ SE
Sbjct: 1501 MRSPINRRFRASQEPRYDHQSPRPAEPAASVTSSKAATPETASVSE 1546
>At1g01570.1 68414.m00074 fringe-related protein + similar to
hypothetical protein GB:AAC23643 [Arabidopsis thaliana]
+ weak similarity to Fringe [Schistocerca
gregaria](GI:6573138);Fringe encodes an extracellular
protein that regulates Notch signalling.
Length = 478
Score = 27.9 bits (59), Expect = 4.3
Identities = 14/35 (40%), Positives = 21/35 (60%)
Frame = -2
Query: 323 LSVAVAVARIVRDTALR*GTGTDIHRNSRWDCNGD 219
L A+ + RIV +T +R GT++ +N RW GD
Sbjct: 126 LRSAIRITRIVSET-VRLLNGTELEKNVRWIVMGD 159
>At5g19080.1 68418.m02268 zinc finger (C3HC4-type RING finger)
family protein contains Pfam domain, PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 378
Score = 27.5 bits (58), Expect = 5.7
Identities = 15/29 (51%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
Frame = +2
Query: 35 TQTQYQPFGQTNRFQNQ-YQEQAPVRPTG 118
+Q Y+P+GQ N QNQ Y +QAP TG
Sbjct: 72 SQISYRPYGQ-NYHQNQYYPQQAPPYFTG 99
>At4g00300.1 68417.m00037 fringe-related protein + weak similarity
to Fringe [Schistocerca gregaria](GI:6573138);Fringe
encodes an extracellular protein that regulates Notch
signalling.
Length = 785
Score = 27.5 bits (58), Expect = 5.7
Identities = 14/32 (43%), Positives = 19/32 (59%)
Frame = -2
Query: 314 AVAVARIVRDTALR*GTGTDIHRNSRWDCNGD 219
A+ + RIV +T +R GT+ RN RW GD
Sbjct: 154 AIRITRIVSET-VRMLNGTEAERNVRWVVMGD 184
>At1g44446.2 68414.m05114 chlorophyll a oxygenase (CAO) /
chlorophyll b synthase identical to chlorophyll a
oxygenase GI:5853117 from [Arabidopsis thaliana];
contains Pfam PF00355 Rieske [2Fe-2S] domain
Length = 511
Score = 27.5 bits (58), Expect = 5.7
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +1
Query: 34 HTNTVSAFWTDKSLPKSVPGTSTSQAYW 117
HT+T + W+ SL K + TS Q YW
Sbjct: 372 HTSTFAKGWSVPSLVKFLTPTSGLQGYW 399
>At1g44446.1 68414.m05113 chlorophyll a oxygenase (CAO) /
chlorophyll b synthase identical to chlorophyll a
oxygenase GI:5853117 from [Arabidopsis thaliana];
contains Pfam PF00355 Rieske [2Fe-2S] domain
Length = 536
Score = 27.5 bits (58), Expect = 5.7
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +1
Query: 34 HTNTVSAFWTDKSLPKSVPGTSTSQAYW 117
HT+T + W+ SL K + TS Q YW
Sbjct: 372 HTSTFAKGWSVPSLVKFLTPTSGLQGYW 399
>At1g12700.1 68414.m01473 helicase domain-containing protein /
pentatricopeptide (PPR) repeat-containing protein
contains Pfam profiles PF01535: PPR repeat, PF00271:
Helicase conserved C-terminal domain
Length = 828
Score = 27.5 bits (58), Expect = 5.7
Identities = 11/18 (61%), Positives = 15/18 (83%)
Frame = -3
Query: 58 KRLILCLCVNKGAKARQD 5
KRL L C++KG+K+RQD
Sbjct: 583 KRLTLRYCLSKGSKSRQD 600
>At3g58860.1 68416.m06560 F-box family protein contains F-box domain
Pfam:PF00646
Length = 457
Score = 27.1 bits (57), Expect = 7.5
Identities = 15/43 (34%), Positives = 21/43 (48%)
Frame = -2
Query: 317 VAVAVARIVRDTALR*GTGTDIHRNSRWDCNGDHRGIVSLQRF 189
+A+ A ++ +L TG D R RW CN RG+ L F
Sbjct: 81 LALQGASPIKKFSLNVKTGVDPDRVDRWICNVLQRGVSHLALF 123
>At1g04080.1 68414.m00396 hydroxyproline-rich glycoprotein family
protein Contains similarity to pre-mRNA processing
protein PRP39 gb L29224 from S. cerevisiae. ESTs
gb|R64908 and gb|T88158, gb|N38703 and gb|AA651043 come
from this gene
Length = 768
Score = 27.1 bits (57), Expect = 7.5
Identities = 11/39 (28%), Positives = 19/39 (48%)
Frame = +2
Query: 23 AFVYTQTQYQPFGQTNRFQNQYQEQAPVRPTGQCRELNE 139
A +YT+ P +R+ + ++E A RP + R E
Sbjct: 228 ALIYTRILENPIQNLDRYFSSFKELAETRPLSELRSAEE 266
>At4g01550.1 68417.m00201 no apical meristem (NAM) family protein
similar to NAC1 (GI:7716952) {Medicago truncatula};
contains Pfam PF02365 : No apical meristem (NAM) protein
Length = 457
Score = 26.6 bits (56), Expect = 9.9
Identities = 11/29 (37%), Positives = 14/29 (48%)
Frame = +1
Query: 70 SLPKSVPGTSTSQAYWTMQGTERKVSSVR 156
S K V +TS YW G +RK+ R
Sbjct: 73 SAKKKVTKRTTSSGYWKATGVDRKIKDKR 101
>At2g17040.1 68415.m01967 no apical meristem (NAM) family protein
contains Pfam PF02365: No apical meristem (NAM) domain;
similar to petunia NAM (X92205) and A. thaliana
sequences ATAF1 (X74755) and ATAF2 (X74756); probable
DNA-binding protein
Length = 250
Score = 26.6 bits (56), Expect = 9.9
Identities = 8/28 (28%), Positives = 18/28 (64%)
Frame = +1
Query: 88 PGTSTSQAYWTMQGTERKVSSVRKLRQI 171
P +T + YW G++RK+ S+ + +++
Sbjct: 52 PSRTTEKGYWKATGSDRKIISLSEPKRV 79
>At2g15695.1 68415.m01797 expressed protein contains Pfam PF05705:
Eukaryotic protein of unknown function (DUF829)
Length = 420
Score = 26.6 bits (56), Expect = 9.9
Identities = 18/48 (37%), Positives = 22/48 (45%), Gaps = 7/48 (14%)
Frame = +2
Query: 290 ERSSLQPPQPTELCPHQ-FGYFKLGDA--RNCSG----FRNCVNGVGY 412
ERSS +P QPT + H G F +N G F C+NG Y
Sbjct: 351 ERSSFRPLQPTSINAHSVLGQFLFDSCVPKNIEGWDIRFAGCLNGQPY 398
>At2g15260.1 68415.m01740 zinc finger (C3HC4-type RING finger)
family protein contains Pfam domain PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 362
Score = 26.6 bits (56), Expect = 9.9
Identities = 20/76 (26%), Positives = 29/76 (38%), Gaps = 3/76 (3%)
Frame = +2
Query: 287 LERSSLQPPQPTELCPHQFGYFKLGDARNCSGFRNCVNGVGYD---FVCPDGLAFNSETY 457
+ + +Q T C H+F +G A N GF C N + + DG FN
Sbjct: 131 VNENDVQRTLVTLKCVHKFHLDCIGSAYNAKGFMECPNCRNIEPGHWQFSDGTHFNPNGM 190
Query: 458 RCEWPDEVADCDAEAF 505
+E D D +F
Sbjct: 191 IANNEEEEEDNDPGSF 206
>At1g78260.2 68414.m09119 RNA recognition motif (RRM)-containing
protein similar to RNA recognition motif-containing
protein SEB-4 GI:8895698 from [Xenopus laevis]; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 271
Score = 26.6 bits (56), Expect = 9.9
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = -1
Query: 435 SPSGHTKS*PTPFTQFLNPLQLRASPNLKYPN 340
SPS + P+ +T PL A+P L YP+
Sbjct: 110 SPSQYQSGGPSTYTGMAAPLPPAAAPQLMYPS 141
>At1g78260.1 68414.m09120 RNA recognition motif (RRM)-containing
protein similar to RNA recognition motif-containing
protein SEB-4 GI:8895698 from [Xenopus laevis]; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 287
Score = 26.6 bits (56), Expect = 9.9
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = -1
Query: 435 SPSGHTKS*PTPFTQFLNPLQLRASPNLKYPN 340
SPS + P+ +T PL A+P L YP+
Sbjct: 110 SPSQYQSGGPSTYTGMAAPLPPAAAPQLMYPS 141
>At1g17970.1 68414.m02223 zinc finger (C3HC4-type RING finger)
family protein similar to Pfam domain, PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 368
Score = 26.6 bits (56), Expect = 9.9
Identities = 18/67 (26%), Positives = 26/67 (38%), Gaps = 3/67 (4%)
Frame = +2
Query: 53 PFGQTNRFQNQYQEQAPVRPTGQCRELNERYPVSGSCDRYIEC---INGTAEEKLCPDGL 223
P Q NRF N PT E + P S R + C A+E P +
Sbjct: 38 PISQPNRFCNSAMSSFFPLPTSSSNESTRKKPYQTSSFRGMGCYAAAAAAAQEVSVPSVI 97
Query: 224 RYNPNVN 244
RY+ +++
Sbjct: 98 RYSADLD 104
>At1g14780.1 68414.m01767 expressed protein
Length = 627
Score = 26.6 bits (56), Expect = 9.9
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = +2
Query: 164 DRYIECINGTAEEKLCPDGLRYNPN 238
DRY E +NG +C ++Y+PN
Sbjct: 441 DRYFEPLNGKKFSHVCTVPVKYDPN 465
>At1g05500.1 68414.m00561 C2 domain-containing protein similar to
Ca2+-dependent lipid-binding protein (CLB1) GI:2789434
from [Lycopersicon esculentum]
Length = 528
Score = 26.6 bits (56), Expect = 9.9
Identities = 9/26 (34%), Positives = 18/26 (69%)
Frame = +3
Query: 156 EAATDILNASMEPLKRNYAPMVSVTI 233
EAA++++ AS+EP+ Y P + ++
Sbjct: 52 EAASELIKASVEPVLEQYRPAIVASL 77
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,866,095
Number of Sequences: 28952
Number of extensions: 263541
Number of successful extensions: 825
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 801
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 825
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 937669760
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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