Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV30200
(516 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC15A10.02 |taf12||transcription factor TFIID complex subunit ... 100 1e-22
SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 28 0.72
SPBC3F6.04c |||U3 snoRNP protein Nop14 |Schizosaccharomyces pomb... 27 2.2
SPBC2A9.04c |||sir antagonist ortholog |Schizosaccharomyces pomb... 26 2.9
SPBC17D1.01 ||SPBC17D11.09|sequence orphan|Schizosaccharomyces p... 26 2.9
SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr ... 26 3.8
SPCC4E9.01c |rec11|SPCC550.16c|meiotic cohesin complex subunit R... 26 3.8
SPBC25B2.03 |||zf-C3HC4 type zinc finger|Schizosaccharomyces pom... 25 5.1
SPAC16E8.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 25 5.1
SPAC20H4.03c |tfs1||transcription elongation factor TFIIS |Schiz... 25 6.7
>SPAC15A10.02 |taf12||transcription factor TFIID complex subunit A
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 450
Score = 100 bits (239), Expect = 1e-22
Identities = 39/85 (45%), Positives = 67/85 (78%)
Frame = +1
Query: 262 DQSSQLLSRPRLQELVREVDPTVQLDEEVEEMLLQLADDFIDTTLNSACALAKHRHAPNV 441
D ++LLS+ +L +L++++D +++ EVEE+LL++AD+F+++ N AC LAKHR + +
Sbjct: 337 DNGNRLLSKRKLHDLLQQIDSEEKIEPEVEELLLEIADEFVESVTNFACRLAKHRKSDTL 396
Query: 442 ELRDVQLHLERQWNMWIPGFGNDEL 516
++RDVQLHLER WN+ +PGF +D++
Sbjct: 397 DVRDVQLHLERNWNIRLPGFASDDI 421
>SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1060
Score = 28.3 bits (60), Expect = 0.72
Identities = 12/40 (30%), Positives = 25/40 (62%)
Frame = +1
Query: 268 SSQLLSRPRLQELVREVDPTVQLDEEVEEMLLQLADDFID 387
SS+ L+ P+L+++ + +D + EEVE++ + D+ D
Sbjct: 736 SSRRLNAPKLRQVRKRIDNGLCTQEEVEDIAINWLDEVSD 775
>SPBC3F6.04c |||U3 snoRNP protein Nop14 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 827
Score = 26.6 bits (56), Expect = 2.2
Identities = 16/56 (28%), Positives = 29/56 (51%)
Frame = +1
Query: 133 IQYVNNPMQSPQLQNTSIQGSPSQHSPMGTQSQVAKVGQGGAGDQSSQLLSRPRLQ 300
+Q V++ ++S + + + H P+G SQV K +G + D+SS + R Q
Sbjct: 715 LQAVSDSIESAKANRKPL--ALQSHRPLGITSQVPKFEEGYSLDKSSHDIDPERAQ 768
>SPBC2A9.04c |||sir antagonist ortholog |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 741
Score = 26.2 bits (55), Expect = 2.9
Identities = 14/59 (23%), Positives = 25/59 (42%)
Frame = +1
Query: 73 NNSLAQAANMPTIGTVGQGAIQYVNNPMQSPQLQNTSIQGSPSQHSPMGTQSQVAKVGQ 249
+N Q + + +GQ +Q M++ Q S +P+Q S G+ V G+
Sbjct: 533 SNGSFQGPGITHLSEMGQRILQRFQEEMENRMNQTRSESSTPAQQSAAGSSINVDTAGR 591
>SPBC17D1.01 ||SPBC17D11.09|sequence orphan|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 584
Score = 26.2 bits (55), Expect = 2.9
Identities = 27/102 (26%), Positives = 43/102 (42%), Gaps = 4/102 (3%)
Frame = +1
Query: 214 MGTQSQVAKVGQGGAGDQSSQLLSR-PRL-QELVREVD--PTVQLDEEVEEMLLQLADDF 381
+ T S V QG A + + L++ P L L+ ++D P+ D L +
Sbjct: 254 LATNSSANAVLQGSAINNALNALAKDPNLIHSLLTQIDFDPSKSKDGLNLGSLTDVVPPQ 313
Query: 382 IDTTLNSACALAKHRHAPNVELRDVQLHLERQWNMWIPGFGN 507
+ AL +H A + +R Q LERQ N +PG +
Sbjct: 314 PPQPEHELAALQEHNEAHDAAMR--QYELERQQNAMLPGLAS 353
>SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1854
Score = 25.8 bits (54), Expect = 3.8
Identities = 14/38 (36%), Positives = 19/38 (50%)
Frame = +1
Query: 145 NNPMQSPQLQNTSIQGSPSQHSPMGTQSQVAKVGQGGA 258
N P +SP L+ ++GS S HS S + G G A
Sbjct: 1786 NEPRRSPSLKEVLLRGSHSLHSNNDRTSFDIEAGFGTA 1823
>SPCC4E9.01c |rec11|SPCC550.16c|meiotic cohesin complex subunit
Rec11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 923
Score = 25.8 bits (54), Expect = 3.8
Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Frame = +1
Query: 130 AIQYVNNPMQSPQLQNTSIQGSPSQHS-PMGTQSQ 231
+++ N + P LQN SI SPS+ GTQ +
Sbjct: 22 SVELENVEYEGPSLQNVSICASPSEKKRKWGTQDE 56
>SPBC25B2.03 |||zf-C3HC4 type zinc finger|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 554
Score = 25.4 bits (53), Expect = 5.1
Identities = 17/50 (34%), Positives = 24/50 (48%)
Frame = +1
Query: 82 LAQAANMPTIGTVGQGAIQYVNNPMQSPQLQNTSIQGSPSQHSPMGTQSQ 231
+++ A P T G I Y NP +P N + PS +PMGT S+
Sbjct: 203 ISEPAKCPYCMTERFGVI-YKPNPKLTPFSFNNNPDTLPSNIAPMGTLSK 251
>SPAC16E8.08 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 269
Score = 25.4 bits (53), Expect = 5.1
Identities = 12/32 (37%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
Frame = +1
Query: 130 AIQYVNNPMQSPQLQNTSIQGSPSQH--SPMG 219
++++ N+ +Q +L I SPS H SPMG
Sbjct: 172 SLKHTNDSLQKKELSPHEIAESPSSHSTSPMG 203
>SPAC20H4.03c |tfs1||transcription elongation factor TFIIS
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 293
Score = 25.0 bits (52), Expect = 6.7
Identities = 10/36 (27%), Positives = 20/36 (55%)
Frame = +1
Query: 163 PQLQNTSIQGSPSQHSPMGTQSQVAKVGQGGAGDQS 270
P T+ +PS+H+ +G+Q+Q Q +G ++
Sbjct: 83 PLKTTTTTSSTPSKHADVGSQAQKQVQKQSSSGQRT 118
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,876,100
Number of Sequences: 5004
Number of extensions: 33102
Number of successful extensions: 99
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 95
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 99
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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