Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30200
         (516 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_4896| Best HMM Match : TFIID_20kDa (HMM E-Value=2.3e-05)            43   1e-04
SB_38712| Best HMM Match : TFIID_20kDa (HMM E-Value=0.0045)            41   5e-04
SB_18786| Best HMM Match : No HMM Matches (HMM E-Value=.)              37   0.011
SB_35638| Best HMM Match : Upf2 (HMM E-Value=2.1e-17)                  31   0.43 
SB_15297| Best HMM Match : RRM_1 (HMM E-Value=2.2e-18)                 31   0.56 
SB_50702| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   0.98 
SB_39472| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.7  
SB_47417| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.3  
SB_6163| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   2.3  
SB_43377| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.0  
SB_34259| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.0  
SB_19932| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.0  
SB_14991| Best HMM Match : PI3_PI4_kinase (HMM E-Value=1.9)            29   3.0  
SB_8216| Best HMM Match : Metallothio_2 (HMM E-Value=0.71)             29   3.0  
SB_55393| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.3  
SB_50449| Best HMM Match : Drf_DAD (HMM E-Value=0.00043)               27   6.9  
SB_23024| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.9  
SB_160| Best HMM Match : PRP1_N (HMM E-Value=2.7)                      27   6.9  
SB_10386| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.2  

>SB_4896| Best HMM Match : TFIID_20kDa (HMM E-Value=2.3e-05)
          Length = 819

 Score = 43.2 bits (97), Expect = 1e-04
 Identities = 23/61 (37%), Positives = 37/61 (60%)
 Frame = +1

Query: 262 DQSSQLLSRPRLQELVREVDPTVQLDEEVEEMLLQLADDFIDTTLNSACALAKHRHAPNV 441
           D  S  LS P  ++L  EV+  + +   +  +LLQ+ADDFI+  +NS+  +AKHR +  +
Sbjct: 3   DHQSVCLSDPH-EQLGYEVEDVIDVSVHLS-LLLQVADDFIENVVNSSAQIAKHRKSNTL 60

Query: 442 E 444
           E
Sbjct: 61  E 61


>SB_38712| Best HMM Match : TFIID_20kDa (HMM E-Value=0.0045)
          Length = 90

 Score = 41.1 bits (92), Expect = 5e-04
 Identities = 16/37 (43%), Positives = 29/37 (78%)
 Frame = +1

Query: 265 QSSQLLSRPRLQELVREVDPTVQLDEEVEEMLLQLAD 375
           Q +Q+L++ R+QEL+ E+DP  Q+D+EVE++  ++ D
Sbjct: 12  QPTQVLTKRRIQELLHEIDPREQMDDEVEDLGYEVED 48


>SB_18786| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1056

 Score = 36.7 bits (81), Expect = 0.011
 Identities = 24/67 (35%), Positives = 31/67 (46%), Gaps = 4/67 (5%)
 Frame = +1

Query: 103 PTIGTVGQGAIQYVNNPMQSPQLQN---TSIQGSP-SQHSPMGTQSQVAKVGQGGAGDQS 270
           P+I T G G+IQYV  P+  PQ        I  SP +Q S M T SQ   +     G + 
Sbjct: 542 PSIVTTGTGSIQYVIKPVIKPQSHRYLPMPISVSPGTQSSQMATSSQATVISTASGGIRY 601

Query: 271 SQLLSRP 291
           + L   P
Sbjct: 602 TSLTQSP 608


>SB_35638| Best HMM Match : Upf2 (HMM E-Value=2.1e-17)
          Length = 1420

 Score = 31.5 bits (68), Expect = 0.43
 Identities = 28/101 (27%), Positives = 49/101 (48%), Gaps = 3/101 (2%)
 Frame = +1

Query: 85  AQAANMPTI--GTVGQGAIQYVNNPMQSPQLQNTSIQGSPSQHSPMGTQS-QVAKVGQGG 255
           A+ A++P    G      +   ++P  S    +TSI GSP   SPM     + ++ G+  
Sbjct: 155 ARPASLPVSVPGVAMAATMTLADSPSSSHGSPHTSITGSPCP-SPMPRDDYEPSESGESE 213

Query: 256 AGDQSSQLLSRPRLQELVREVDPTVQLDEEVEEMLLQLADD 378
             D   ++LS P      ++V+PT + D+E ++M  +L  D
Sbjct: 214 QDDSEVKMLSPP------KKVEPTAE-DQEFQQMFERLMVD 247


>SB_15297| Best HMM Match : RRM_1 (HMM E-Value=2.2e-18)
          Length = 291

 Score = 31.1 bits (67), Expect = 0.56
 Identities = 16/39 (41%), Positives = 20/39 (51%)
 Frame = +1

Query: 112 GTVGQGAIQYVNNPMQSPQLQNTSIQGSPSQHSPMGTQS 228
           GT+   A QY+  PM SP     ++ GSP    P G QS
Sbjct: 164 GTMKSPAQQYLYTPMYSPTQSAPTLSGSPLTVIPPGPQS 202


>SB_50702| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 823

 Score = 30.3 bits (65), Expect = 0.98
 Identities = 30/90 (33%), Positives = 39/90 (43%), Gaps = 8/90 (8%)
 Frame = +1

Query: 88  QAANMPTIGTVGQGAIQYVNNPMQSPQLQNTSIQGS----PSQHSPMGTQSQ----VAKV 243
           Q    P   T  QG  Q  + P+Q  Q Q T  QG+    PSQ  P GTQ Q    +   
Sbjct: 480 QQVIQPVWPTQPQGTQQQASQPIQPTQPQGTQQQGTLPIYPSQ--PQGTQQQGTLPIYPS 537

Query: 244 GQGGAGDQSSQLLSRPRLQELVREVDPTVQ 333
              G   Q +Q + +P  Q   + V PT+Q
Sbjct: 538 QPQGTQQQGTQPM-KP-TQPWTQPVQPTIQ 565


>SB_39472| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 177

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 16/52 (30%), Positives = 24/52 (46%)
 Frame = +1

Query: 70  SNNSLAQAANMPTIGTVGQGAIQYVNNPMQSPQLQNTSIQGSPSQHSPMGTQ 225
           +NNSL Q AN P      +   Q  NNP+ +P+ +  +       + P G Q
Sbjct: 45  ANNSLTQQANNPLTQQANKSLTQQANNPL-TPKGKQPNQPTDQQPNKPTGQQ 95



 Score = 27.1 bits (57), Expect = 9.2
 Identities = 16/56 (28%), Positives = 24/56 (42%)
 Frame = +1

Query: 58  KV*MSNNSLAQAANMPTIGTVGQGAIQYVNNPMQSPQLQNTSIQGSPSQHSPMGTQ 225
           K   +NN + Q AN P          Q  NNP+ + Q   +  Q + +  +P G Q
Sbjct: 25  KTQQANNPMTQQANNPINQQANNSLTQQANNPL-TQQANKSLTQQANNPLTPKGKQ 79


>SB_47417| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 199

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = -2

Query: 491 IHMFH*RSKCSCTSLSSTFGACLCLARAQA 402
           IH+++   K  C+  +++ GACLCL  A A
Sbjct: 105 IHVYNQAIKVYCSQGNTSLGACLCLELADA 134


>SB_6163| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 346

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 24/62 (38%), Positives = 32/62 (51%), Gaps = 5/62 (8%)
 Frame = +1

Query: 259 GDQSSQLLSRPRLQELVREVDPTVQ-----LDEEVEEMLLQLADDFIDTTLNSACALAKH 423
           GD++SQ    P LQ L   V  TVQ     L E V  MLL++  D ++  L+S   L +H
Sbjct: 68  GDENSQ--RTPDLQSLGDRVYGTVQQLYPTLAERVTGMLLEMPADQLNHLLDSREGLLEH 125

Query: 424 RH 429
            H
Sbjct: 126 IH 127


>SB_43377| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 625

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = +1

Query: 319 DPTVQLDEEVEEMLLQLADDFIDTTLNSACAL 414
           D  V + E +E+  + +A   I TTLNS CA+
Sbjct: 449 DDRVAIHEAMEQQTISIAKAGITTTLNSRCAV 480


>SB_34259| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 119

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 14/44 (31%), Positives = 28/44 (63%), Gaps = 2/44 (4%)
 Frame = -1

Query: 267 LVTSSALANFCYL*LGPHRAVLRRRTLNRSVLKLRTL--HGIIN 142
           ++ ++A++ +  + LG HR +  RRT + S+  L+T+  H +IN
Sbjct: 42  MIGATAISTYTLVLLGRHRDLHYRRTWDMSITLLKTIDTHHVIN 85


>SB_19932| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2201

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 22/70 (31%), Positives = 30/70 (42%), Gaps = 2/70 (2%)
 Frame = +1

Query: 112 GTVGQGAIQYVNNP--MQSPQLQNTSIQGSPSQHSPMGTQSQVAKVGQGGAGDQSSQLLS 285
           GTVG    Q  + P  +Q    QN  +QG P    PMG  + +     G  G Q  Q+  
Sbjct: 544 GTVGPRGPQGFSGPRGLQGTPGQN-GLQGPPGPQGPMGVNNSIGP--PGPPGPQGPQVYF 600

Query: 286 RPRLQELVRE 315
           R  +  L R+
Sbjct: 601 RRAVGNLNRQ 610


>SB_14991| Best HMM Match : PI3_PI4_kinase (HMM E-Value=1.9)
          Length = 235

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 16/51 (31%), Positives = 26/51 (50%)
 Frame = -2

Query: 164 GLCMGLLTYCIAP*PTVPIVGIFAACARELLDIYTFNTTNEKTSRIKTIIF 12
           G CM  +  C+    T+P   + AA  R L  +++  TT EK  +++  IF
Sbjct: 161 GYCMEDIIKCLQVPLTMPAKEVRAAGVRALRHLFSDKTTFEKMLKVRMDIF 211


>SB_8216| Best HMM Match : Metallothio_2 (HMM E-Value=0.71)
          Length = 628

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 18/53 (33%), Positives = 27/53 (50%)
 Frame = +1

Query: 208 SPMGTQSQVAKVGQGGAGDQSSQLLSRPRLQELVREVDPTVQLDEEVEEMLLQ 366
           SP  + S   K+G+GG   +  +   + R Q      DPT  +D+E E+ LLQ
Sbjct: 489 SPCSSGSSGCKLGKGGKKRRGERARQKMRNQRHSPPGDPTELMDDE-EKRLLQ 540


>SB_55393| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1597

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 21/84 (25%), Positives = 29/84 (34%)
 Frame = +1

Query: 70  SNNSLAQAANMPTIGTVGQGAIQYVNNPMQSPQLQNTSIQGSPSQHSPMGTQSQVAKVGQ 249
           +N    Q  N PT     Q   Q  N P   P  Q T+    P+      T     +   
Sbjct: 221 TNQPTNQPTNQPTNQPTNQPTNQPTNQPTNQPTNQPTNQTNQPTNQPNQPTNLPTDQPTN 280

Query: 250 GGAGDQSSQLLSRPRLQELVREVD 321
             A  Q++   S+P  Q   R +D
Sbjct: 281 QPANLQTTHAPSQPADQPTNRSLD 304


>SB_50449| Best HMM Match : Drf_DAD (HMM E-Value=0.00043)
          Length = 801

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 9/23 (39%), Positives = 11/23 (47%)
 Frame = +3

Query: 435 KCRTERCAATFRTSMEHVDTRFW 503
           KCR   C++T  T   H   R W
Sbjct: 227 KCRLANCSSTTETESNHASRRIW 249


>SB_23024| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 593

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 21/80 (26%), Positives = 33/80 (41%)
 Frame = +1

Query: 154 MQSPQLQNTSIQGSPSQHSPMGTQSQVAKVGQGGAGDQSSQLLSRPRLQELVREVDPTVQ 333
           M+   L    +Q   +  SP  + +      Q  A  +    L+ PR  ++ R   P + 
Sbjct: 1   MERTTLNEIHMQTIKTLTSPRKSPNSKRLTPQSAAKSKRGNPLT-PRGNDINRLNSPVIS 59

Query: 334 LDEEVEEMLLQLADDFIDTT 393
           LDEE     L+  D F DT+
Sbjct: 60  LDEEKPPSWLKRRDSFHDTS 79


>SB_160| Best HMM Match : PRP1_N (HMM E-Value=2.7)
          Length = 257

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 21/80 (26%), Positives = 33/80 (41%)
 Frame = +1

Query: 154 MQSPQLQNTSIQGSPSQHSPMGTQSQVAKVGQGGAGDQSSQLLSRPRLQELVREVDPTVQ 333
           M+   L    +Q   +  SP  + +      Q  A  +    L+ PR  ++ R   P + 
Sbjct: 95  MERTTLNEIHMQTIKTLTSPRKSPNSKRLTPQSAAKSKRGNPLT-PRGNDINRLNSPVIS 153

Query: 334 LDEEVEEMLLQLADDFIDTT 393
           LDEE     L+  D F DT+
Sbjct: 154 LDEEKPPSWLKRRDSFHDTS 173


>SB_10386| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 625

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 19/60 (31%), Positives = 29/60 (48%)
 Frame = +1

Query: 70  SNNSLAQAANMPTIGTVGQGAIQYVNNPMQSPQLQNTSIQGSPSQHSPMGTQSQVAKVGQ 249
           S++     +N+     + QG IQ   NP  SP+   T    S S  S MG ++Q+  VG+
Sbjct: 284 SDDETMTRSNINRNDLISQG-IQRTRNPSDSPRQTPTRGMSSGSSTSEMG-ENQIRGVGK 341


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,103,683
Number of Sequences: 59808
Number of extensions: 246717
Number of successful extensions: 657
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 601
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 654
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1148326654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)