Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV30200
(516 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X84002-1|CAA58826.1| 161|Homo sapiens PolII transcription facto... 134 1e-31
U57693-1|AAC50600.1| 161|Homo sapiens TAF20 protein. 134 1e-31
D50544-1|BAA09112.1| 161|Homo sapiens TFIID subunit p22 protein. 134 1e-31
BT007031-1|AAP35678.1| 161|Homo sapiens TAF12 RNA polymerase II... 134 1e-31
BC011986-1|AAH11986.1| 161|Homo sapiens TAF12 protein protein. 134 1e-31
AY206865-1|AAO13491.1| 161|Homo sapiens TAF12 RNA polymerase II... 134 1e-31
AL513497-6|CAI22291.1| 161|Homo sapiens TAF12 RNA polymerase II... 134 1e-31
U57693-2|AAC50601.1| 131|Homo sapiens TAF15 protein. 131 1e-30
AY771619-1|AAX14814.1| 1446|Homo sapiens olfactorin long isoform... 33 0.45
AB051810-1|BAD23798.1| 1374|Homo sapiens Uromodulin-like protein... 33 0.45
M83234-1|AAA59949.1| 320|Homo sapiens DNA-binding protein protein. 30 5.5
BC051824-1|AAH51824.1| 1122|Homo sapiens histone deacetylase 5 p... 29 7.3
BC010543-1|AAH10543.1| 212|Homo sapiens MED8 protein protein. 29 7.3
BC010019-1|AAH10019.3| 179|Homo sapiens mediator of RNA polymer... 29 7.3
AL139289-6|CAI23382.1| 179|Homo sapiens mediator of RNA polymer... 29 7.3
AL139289-5|CAI23381.1| 212|Homo sapiens mediator of RNA polymer... 29 7.3
AF521562-1|AAM76709.1| 268|Homo sapiens mediator of RNA polymer... 29 7.3
AF132608-1|AAD29047.1| 1122|Homo sapiens histone deacetylase 5 p... 29 7.3
AB011172-1|BAA25526.2| 1080|Homo sapiens KIAA0600 protein protein. 29 7.3
>X84002-1|CAA58826.1| 161|Homo sapiens PolII transcription factor
TFTIID protein.
Length = 161
Score = 134 bits (325), Expect = 1e-31
Identities = 64/121 (52%), Positives = 92/121 (76%), Gaps = 8/121 (6%)
Frame = +1
Query: 178 TSIQGSPSQHSPMGTQSQ---VAKV-GQGGAGD----QSSQLLSRPRLQELVREVDPTVQ 333
+SI+ P+ P G+ + V K+ G GAG +++Q+L++ +LQ+LVREVDP Q
Sbjct: 16 SSIKPEPASTPPQGSMANSTAVVKIPGTPGAGGRLSPENNQVLTKKKLQDLVREVDPNEQ 75
Query: 334 LDEEVEEMLLQLADDFIDTTLNSACALAKHRHAPNVELRDVQLHLERQWNMWIPGFGNDE 513
LDE+VEEMLLQ+ADDFI++ + +AC LA+HR + +E++DVQLHLERQWNMWIPGFG++E
Sbjct: 76 LDEDVEEMLLQIADDFIESVVTAACQLARHRKSSTLEVKDVQLHLERQWNMWIPGFGSEE 135
Query: 514 L 516
+
Sbjct: 136 I 136
>U57693-1|AAC50600.1| 161|Homo sapiens TAF20 protein.
Length = 161
Score = 134 bits (325), Expect = 1e-31
Identities = 64/121 (52%), Positives = 92/121 (76%), Gaps = 8/121 (6%)
Frame = +1
Query: 178 TSIQGSPSQHSPMGTQSQ---VAKV-GQGGAGD----QSSQLLSRPRLQELVREVDPTVQ 333
+SI+ P+ P G+ + V K+ G GAG +++Q+L++ +LQ+LVREVDP Q
Sbjct: 16 SSIKPEPASTPPQGSMANSTAVVKIPGTPGAGGRLSPENNQVLTKKKLQDLVREVDPNEQ 75
Query: 334 LDEEVEEMLLQLADDFIDTTLNSACALAKHRHAPNVELRDVQLHLERQWNMWIPGFGNDE 513
LDE+VEEMLLQ+ADDFI++ + +AC LA+HR + +E++DVQLHLERQWNMWIPGFG++E
Sbjct: 76 LDEDVEEMLLQIADDFIESVVTAACQLARHRKSSTLEVKDVQLHLERQWNMWIPGFGSEE 135
Query: 514 L 516
+
Sbjct: 136 I 136
>D50544-1|BAA09112.1| 161|Homo sapiens TFIID subunit p22 protein.
Length = 161
Score = 134 bits (325), Expect = 1e-31
Identities = 64/121 (52%), Positives = 92/121 (76%), Gaps = 8/121 (6%)
Frame = +1
Query: 178 TSIQGSPSQHSPMGTQSQ---VAKV-GQGGAGD----QSSQLLSRPRLQELVREVDPTVQ 333
+SI+ P+ P G+ + V K+ G GAG +++Q+L++ +LQ+LVREVDP Q
Sbjct: 16 SSIKPEPASTPPQGSMANSTAVVKIPGTPGAGGRLSPENNQVLTKKKLQDLVREVDPNEQ 75
Query: 334 LDEEVEEMLLQLADDFIDTTLNSACALAKHRHAPNVELRDVQLHLERQWNMWIPGFGNDE 513
LDE+VEEMLLQ+ADDFI++ + +AC LA+HR + +E++DVQLHLERQWNMWIPGFG++E
Sbjct: 76 LDEDVEEMLLQIADDFIESVVTAACQLARHRKSSTLEVKDVQLHLERQWNMWIPGFGSEE 135
Query: 514 L 516
+
Sbjct: 136 I 136
>BT007031-1|AAP35678.1| 161|Homo sapiens TAF12 RNA polymerase II,
TATA box binding protein (TBP)-associated factor, 20kD
protein.
Length = 161
Score = 134 bits (325), Expect = 1e-31
Identities = 64/121 (52%), Positives = 92/121 (76%), Gaps = 8/121 (6%)
Frame = +1
Query: 178 TSIQGSPSQHSPMGTQSQ---VAKV-GQGGAGD----QSSQLLSRPRLQELVREVDPTVQ 333
+SI+ P+ P G+ + V K+ G GAG +++Q+L++ +LQ+LVREVDP Q
Sbjct: 16 SSIKPEPASTPPQGSMANSTAVVKIPGTPGAGGRLSPENNQVLTKKKLQDLVREVDPNEQ 75
Query: 334 LDEEVEEMLLQLADDFIDTTLNSACALAKHRHAPNVELRDVQLHLERQWNMWIPGFGNDE 513
LDE+VEEMLLQ+ADDFI++ + +AC LA+HR + +E++DVQLHLERQWNMWIPGFG++E
Sbjct: 76 LDEDVEEMLLQIADDFIESVVTAACQLARHRKSSTLEVKDVQLHLERQWNMWIPGFGSEE 135
Query: 514 L 516
+
Sbjct: 136 I 136
>BC011986-1|AAH11986.1| 161|Homo sapiens TAF12 protein protein.
Length = 161
Score = 134 bits (325), Expect = 1e-31
Identities = 64/121 (52%), Positives = 92/121 (76%), Gaps = 8/121 (6%)
Frame = +1
Query: 178 TSIQGSPSQHSPMGTQSQ---VAKV-GQGGAGD----QSSQLLSRPRLQELVREVDPTVQ 333
+SI+ P+ P G+ + V K+ G GAG +++Q+L++ +LQ+LVREVDP Q
Sbjct: 16 SSIKPEPASTPPQGSMANSTAVVKIPGTPGAGGRLSPENNQVLTKKKLQDLVREVDPNEQ 75
Query: 334 LDEEVEEMLLQLADDFIDTTLNSACALAKHRHAPNVELRDVQLHLERQWNMWIPGFGNDE 513
LDE+VEEMLLQ+ADDFI++ + +AC LA+HR + +E++DVQLHLERQWNMWIPGFG++E
Sbjct: 76 LDEDVEEMLLQIADDFIESVVTAACQLARHRKSSTLEVKDVQLHLERQWNMWIPGFGSEE 135
Query: 514 L 516
+
Sbjct: 136 I 136
>AY206865-1|AAO13491.1| 161|Homo sapiens TAF12 RNA polymerase II,
TATA box binding protein (TBP)-associated factor, 20kD
protein.
Length = 161
Score = 134 bits (325), Expect = 1e-31
Identities = 64/121 (52%), Positives = 92/121 (76%), Gaps = 8/121 (6%)
Frame = +1
Query: 178 TSIQGSPSQHSPMGTQSQ---VAKV-GQGGAGD----QSSQLLSRPRLQELVREVDPTVQ 333
+SI+ P+ P G+ + V K+ G GAG +++Q+L++ +LQ+LVREVDP Q
Sbjct: 16 SSIKPEPASTPPQGSMANSTAVVKIPGTPGAGGRLSPENNQVLTKKKLQDLVREVDPNEQ 75
Query: 334 LDEEVEEMLLQLADDFIDTTLNSACALAKHRHAPNVELRDVQLHLERQWNMWIPGFGNDE 513
LDE+VEEMLLQ+ADDFI++ + +AC LA+HR + +E++DVQLHLERQWNMWIPGFG++E
Sbjct: 76 LDEDVEEMLLQIADDFIESVVTAACQLARHRKSSTLEVKDVQLHLERQWNMWIPGFGSEE 135
Query: 514 L 516
+
Sbjct: 136 I 136
>AL513497-6|CAI22291.1| 161|Homo sapiens TAF12 RNA polymerase II,
TATA box binding proteineudogene protein.
Length = 161
Score = 134 bits (325), Expect = 1e-31
Identities = 64/121 (52%), Positives = 92/121 (76%), Gaps = 8/121 (6%)
Frame = +1
Query: 178 TSIQGSPSQHSPMGTQSQ---VAKV-GQGGAGD----QSSQLLSRPRLQELVREVDPTVQ 333
+SI+ P+ P G+ + V K+ G GAG +++Q+L++ +LQ+LVREVDP Q
Sbjct: 16 SSIKPEPASTPPQGSMANSTAVVKIPGTPGAGGRLSPENNQVLTKKKLQDLVREVDPNEQ 75
Query: 334 LDEEVEEMLLQLADDFIDTTLNSACALAKHRHAPNVELRDVQLHLERQWNMWIPGFGNDE 513
LDE+VEEMLLQ+ADDFI++ + +AC LA+HR + +E++DVQLHLERQWNMWIPGFG++E
Sbjct: 76 LDEDVEEMLLQIADDFIESVVTAACQLARHRKSSTLEVKDVQLHLERQWNMWIPGFGSEE 135
Query: 514 L 516
+
Sbjct: 136 I 136
>U57693-2|AAC50601.1| 131|Homo sapiens TAF15 protein.
Length = 131
Score = 131 bits (317), Expect = 1e-30
Identities = 60/106 (56%), Positives = 84/106 (79%), Gaps = 5/106 (4%)
Frame = +1
Query: 214 MGTQSQVAKV-GQGGAGD----QSSQLLSRPRLQELVREVDPTVQLDEEVEEMLLQLADD 378
M + V K+ G GAG +++Q+L++ +LQ+LVREVDP QLDE+VEEMLLQ+ADD
Sbjct: 1 MANSTAVVKIPGTPGAGGRLSPENNQVLTKKKLQDLVREVDPNEQLDEDVEEMLLQIADD 60
Query: 379 FIDTTLNSACALAKHRHAPNVELRDVQLHLERQWNMWIPGFGNDEL 516
FI++ + +AC LA+HR + +E++DVQLHLERQWNMWIPGFG++E+
Sbjct: 61 FIESVVTAACQLARHRKSSTLEVKDVQLHLERQWNMWIPGFGSEEI 106
>AY771619-1|AAX14814.1| 1446|Homo sapiens olfactorin long isoform
precursor protein.
Length = 1446
Score = 33.5 bits (73), Expect = 0.45
Identities = 19/56 (33%), Positives = 29/56 (51%)
Frame = +1
Query: 103 PTIGTVGQGAIQYVNNPMQSPQLQNTSIQGSPSQHSPMGTQSQVAKVGQGGAGDQS 270
P+ G+ QG+++ + SP ++TS QGSPSQ +P + A QG S
Sbjct: 653 PSQGSPSQGSLRQESTSQASPSQRSTS-QGSPSQVNPSQGSTSHANSSQGSPSQGS 707
>AB051810-1|BAD23798.1| 1374|Homo sapiens Uromodulin-like protein
protein.
Length = 1374
Score = 33.5 bits (73), Expect = 0.45
Identities = 19/56 (33%), Positives = 29/56 (51%)
Frame = +1
Query: 103 PTIGTVGQGAIQYVNNPMQSPQLQNTSIQGSPSQHSPMGTQSQVAKVGQGGAGDQS 270
P+ G+ QG+++ + SP ++TS QGSPSQ +P + A QG S
Sbjct: 581 PSQGSPSQGSLRQESTSQASPSQRSTS-QGSPSQVNPSQGSTSHANSSQGSPSQGS 635
>M83234-1|AAA59949.1| 320|Homo sapiens DNA-binding protein protein.
Length = 320
Score = 29.9 bits (64), Expect = 5.5
Identities = 28/93 (30%), Positives = 43/93 (46%), Gaps = 3/93 (3%)
Frame = +1
Query: 73 NNSLAQAANMPTI---GTVGQGAIQYVNNPMQSPQLQNTSIQGSPSQHSPMGTQSQVAKV 243
NN+ A A +PT+ T G+ QY N P+Q ++ QG+ Q P+ Q + +
Sbjct: 180 NNAAAYAGEVPTLLHAETYGRRP-QYSNPPVQGEVMEGADNQGAGEQGRPV-RQICIGDI 237
Query: 244 GQGGAGDQSSQLLSRPRLQELVREVDPTVQLDE 342
AG LL++ + +E E D Q DE
Sbjct: 238 DHDSAG----ALLAKRQPREDGNEEDKENQGDE 266
>BC051824-1|AAH51824.1| 1122|Homo sapiens histone deacetylase 5
protein.
Length = 1122
Score = 29.5 bits (63), Expect = 7.3
Identities = 28/108 (25%), Positives = 45/108 (41%), Gaps = 2/108 (1%)
Frame = +1
Query: 169 LQNTSIQGSPS--QHSPMGTQSQVAKVGQGGAGDQSSQLLSRPRLQELVREVDPTVQLDE 342
L TS+ P + P+ ++ + +G GG G S L LV VDPT++ +
Sbjct: 20 LPRTSLHSIPVTVEVKPVLPRAMPSSMGGGGGGSPSPVELRGA----LVGSVDPTLREQQ 75
Query: 343 EVEEMLLQLADDFIDTTLNSACALAKHRHAPNVELRDVQLHLERQWNM 486
+E+L + L A +H H +Q HL++Q M
Sbjct: 76 LQQELLALKQQQQLQKQLLFAEFQKQHDHLTRQHEVQLQKHLKQQQEM 123
>BC010543-1|AAH10543.1| 212|Homo sapiens MED8 protein protein.
Length = 212
Score = 29.5 bits (63), Expect = 7.3
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = +1
Query: 169 LQNTSIQGSPSQHSPMGTQSQVAKVGQGG 255
LQ + G+PSQ PM + Q+A+ GQ G
Sbjct: 131 LQQVQMAGAPSQQQPMLSGVQMAQAGQPG 159
>BC010019-1|AAH10019.3| 179|Homo sapiens mediator of RNA polymerase
II transcription, subunit 8 homolog (S. cerevisiae)
protein.
Length = 179
Score = 29.5 bits (63), Expect = 7.3
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = +1
Query: 169 LQNTSIQGSPSQHSPMGTQSQVAKVGQGG 255
LQ + G+PSQ PM + Q+A+ GQ G
Sbjct: 131 LQQVQMAGAPSQQQPMLSGVQMAQAGQPG 159
>AL139289-6|CAI23382.1| 179|Homo sapiens mediator of RNA polymerase
II transcription, subunit 8 homolog (S. cerevisiae)
protein.
Length = 179
Score = 29.5 bits (63), Expect = 7.3
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = +1
Query: 169 LQNTSIQGSPSQHSPMGTQSQVAKVGQGG 255
LQ + G+PSQ PM + Q+A+ GQ G
Sbjct: 131 LQQVQMAGAPSQQQPMLSGVQMAQAGQPG 159
>AL139289-5|CAI23381.1| 212|Homo sapiens mediator of RNA polymerase
II transcription, subunit 8 homolog (S. cerevisiae)
protein.
Length = 212
Score = 29.5 bits (63), Expect = 7.3
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = +1
Query: 169 LQNTSIQGSPSQHSPMGTQSQVAKVGQGG 255
LQ + G+PSQ PM + Q+A+ GQ G
Sbjct: 131 LQQVQMAGAPSQQQPMLSGVQMAQAGQPG 159
>AF521562-1|AAM76709.1| 268|Homo sapiens mediator of RNA polymerase
II transcription subunit MED8 protein.
Length = 268
Score = 29.5 bits (63), Expect = 7.3
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = +1
Query: 169 LQNTSIQGSPSQHSPMGTQSQVAKVGQGG 255
LQ + G+PSQ PM + Q+A+ GQ G
Sbjct: 220 LQQVQMAGAPSQQQPMLSGVQMAQAGQPG 248
>AF132608-1|AAD29047.1| 1122|Homo sapiens histone deacetylase 5
protein.
Length = 1122
Score = 29.5 bits (63), Expect = 7.3
Identities = 28/108 (25%), Positives = 45/108 (41%), Gaps = 2/108 (1%)
Frame = +1
Query: 169 LQNTSIQGSPS--QHSPMGTQSQVAKVGQGGAGDQSSQLLSRPRLQELVREVDPTVQLDE 342
L TS+ P + P+ ++ + +G GG G S L LV VDPT++ +
Sbjct: 20 LPRTSLHSIPVTVEVKPVLPRAMPSSMGGGGGGSPSPVELRGA----LVGSVDPTLREQQ 75
Query: 343 EVEEMLLQLADDFIDTTLNSACALAKHRHAPNVELRDVQLHLERQWNM 486
+E+L + L A +H H +Q HL++Q M
Sbjct: 76 LQQELLALKQQQQLQKQLLFAEFQKQHDHLTRQHEVQLQKHLKQQQEM 123
>AB011172-1|BAA25526.2| 1080|Homo sapiens KIAA0600 protein protein.
Length = 1080
Score = 29.5 bits (63), Expect = 7.3
Identities = 28/108 (25%), Positives = 45/108 (41%), Gaps = 2/108 (1%)
Frame = +1
Query: 169 LQNTSIQGSPS--QHSPMGTQSQVAKVGQGGAGDQSSQLLSRPRLQELVREVDPTVQLDE 342
L TS+ P + P+ ++ + +G GG G S L LV VDPT++ +
Sbjct: 63 LPRTSLHSIPVTVEVKPVLPRAMPSSMGGGGGGSPSPVELRGA----LVGSVDPTLREQQ 118
Query: 343 EVEEMLLQLADDFIDTTLNSACALAKHRHAPNVELRDVQLHLERQWNM 486
+E+L + L A +H H +Q HL++Q M
Sbjct: 119 LQQELLALKQQQQLQKQLLFAEFQKQHDHLTRQHEVQLQKHLKQQQEM 166
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 65,523,488
Number of Sequences: 237096
Number of extensions: 1124735
Number of successful extensions: 3605
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 3430
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3605
length of database: 76,859,062
effective HSP length: 85
effective length of database: 56,705,902
effective search space used: 4876707572
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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