Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV30200
(516 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL132860-3|CAB60514.2| 342|Caenorhabditis elegans Hypothetical ... 60 9e-10
Z81522-9|CAB61005.2| 3674|Caenorhabditis elegans Hypothetical pr... 30 1.1
Z81063-9|CAB61012.2| 3674|Caenorhabditis elegans Hypothetical pr... 30 1.1
AJ012469-1|CAA10033.1| 3674|Caenorhabditis elegans DYS-1 protein... 30 1.1
Z81568-3|CAB04592.1| 643|Caenorhabditis elegans Hypothetical pr... 29 2.0
Z82268-5|CAB05195.1| 304|Caenorhabditis elegans Hypothetical pr... 29 2.6
Z69385-4|CAA93427.2| 1326|Caenorhabditis elegans Hypothetical pr... 28 3.4
AJ131742-1|CAA10498.1| 590|Caenorhabditis elegans protein ( Cae... 28 3.4
AF098989-4|AAK18956.2| 590|Caenorhabditis elegans Dystrobrevin ... 28 3.4
Z50874-6|CAA90765.1| 759|Caenorhabditis elegans Hypothetical pr... 27 6.0
AC024763-4|AAF60519.1| 1347|Caenorhabditis elegans Temporarily a... 27 8.0
>AL132860-3|CAB60514.2| 342|Caenorhabditis elegans Hypothetical
protein Y56A3A.4 protein.
Length = 342
Score = 60.1 bits (139), Expect = 9e-10
Identities = 33/117 (28%), Positives = 61/117 (52%)
Frame = +1
Query: 136 QYVNNPMQSPQLQNTSIQGSPSQHSPMGTQSQVAKVGQGGAGDQSSQLLSRPRLQELVRE 315
Q P S Q+Q I Q +P Q A V G ++ + +L +L+++
Sbjct: 189 QQHQQPPPSQQIQQPPIPQPQQQQAPP-PQMIPAAVPYGS-------IMEKSKLDDLMQQ 240
Query: 316 VDPTVQLDEEVEEMLLQLADDFIDTTLNSACALAKHRHAPNVELRDVQLHLERQWNM 486
+ T L+E V+++L++ ADDF+ + ++ AC + K+R +E RD++ L+ +NM
Sbjct: 241 ISSTTVLEENVKDVLVEYADDFVSSLIDKACKMIKNREVKKIESRDIEFILKNVYNM 297
>Z81522-9|CAB61005.2| 3674|Caenorhabditis elegans Hypothetical protein
F15D3.1a protein.
Length = 3674
Score = 29.9 bits (64), Expect = 1.1
Identities = 28/116 (24%), Positives = 41/116 (35%)
Frame = +1
Query: 163 PQLQNTSIQGSPSQHSPMGTQSQVAKVGQGGAGDQSSQLLSRPRLQELVREVDPTVQLDE 342
P++Q S + + G + + +VGQ S L S EL E+D V+ E
Sbjct: 2133 PRMQEDSPKSQDIRQKVYGIEDRFRRVGQAEGAAISKALSSALTEPELKLELDEVVRWCE 2192
Query: 343 EVEEMLLQLADDFIDTTLNSACALAKHRHAPNVELRDVQLHLERQWNMWIPGFGND 510
E+ Q + L E +D + LE NM IP D
Sbjct: 2193 MAEKEAAQNVNSLDGDGLEKLDGRLAQFTKELQERKDDMVQLEMAKNMIIPSLKGD 2248
>Z81063-9|CAB61012.2| 3674|Caenorhabditis elegans Hypothetical protein
F15D3.1a protein.
Length = 3674
Score = 29.9 bits (64), Expect = 1.1
Identities = 28/116 (24%), Positives = 41/116 (35%)
Frame = +1
Query: 163 PQLQNTSIQGSPSQHSPMGTQSQVAKVGQGGAGDQSSQLLSRPRLQELVREVDPTVQLDE 342
P++Q S + + G + + +VGQ S L S EL E+D V+ E
Sbjct: 2133 PRMQEDSPKSQDIRQKVYGIEDRFRRVGQAEGAAISKALSSALTEPELKLELDEVVRWCE 2192
Query: 343 EVEEMLLQLADDFIDTTLNSACALAKHRHAPNVELRDVQLHLERQWNMWIPGFGND 510
E+ Q + L E +D + LE NM IP D
Sbjct: 2193 MAEKEAAQNVNSLDGDGLEKLDGRLAQFTKELQERKDDMVQLEMAKNMIIPSLKGD 2248
>AJ012469-1|CAA10033.1| 3674|Caenorhabditis elegans DYS-1 protein
protein.
Length = 3674
Score = 29.9 bits (64), Expect = 1.1
Identities = 28/116 (24%), Positives = 41/116 (35%)
Frame = +1
Query: 163 PQLQNTSIQGSPSQHSPMGTQSQVAKVGQGGAGDQSSQLLSRPRLQELVREVDPTVQLDE 342
P++Q S + + G + + +VGQ S L S EL E+D V+ E
Sbjct: 2133 PRMQEDSPKSQDIRQKVYGIEDRFRRVGQAEGAAISKALSSALTEPELKLELDEVVRWCE 2192
Query: 343 EVEEMLLQLADDFIDTTLNSACALAKHRHAPNVELRDVQLHLERQWNMWIPGFGND 510
E+ Q + L E +D + LE NM IP D
Sbjct: 2193 MAEKEAAQNVNSLDGDGLEKLDGRLAQFTKELQERKDDMVQLEMAKNMIIPSLKGD 2248
>Z81568-3|CAB04592.1| 643|Caenorhabditis elegans Hypothetical
protein K08E3.4 protein.
Length = 643
Score = 29.1 bits (62), Expect = 2.0
Identities = 17/53 (32%), Positives = 23/53 (43%)
Frame = +1
Query: 70 SNNSLAQAANMPTIGTVGQGAIQYVNNPMQSPQLQNTSIQGSPSQHSPMGTQS 228
S N A P+ G VG + + P P L + GSP + P+GT S
Sbjct: 366 SVNPAPAPAPTPSAGLVGSRKELFSSKP-SGPVLPKPQVNGSPKKWPPVGTTS 417
>Z82268-5|CAB05195.1| 304|Caenorhabditis elegans Hypothetical
protein F52B11.4 protein.
Length = 304
Score = 28.7 bits (61), Expect = 2.6
Identities = 22/65 (33%), Positives = 26/65 (40%), Gaps = 1/65 (1%)
Frame = +1
Query: 85 AQAANMPTIGTVGQGAIQYVNNPMQSPQLQNTSIQ-GSPSQHSPMGTQSQVAKVGQGGAG 261
AQ+ ++P G GQ Q P SP Q G+P Q P G Q G GA
Sbjct: 213 AQSESIP--GAPGQAGPQGPPGPAGSPGAPGGPGQPGAPGQKGPSGAPGQPGADGNPGAP 270
Query: 262 DQSSQ 276
Q Q
Sbjct: 271 GQPGQ 275
>Z69385-4|CAA93427.2| 1326|Caenorhabditis elegans Hypothetical
protein ZK593.5 protein.
Length = 1326
Score = 28.3 bits (60), Expect = 3.4
Identities = 26/113 (23%), Positives = 50/113 (44%), Gaps = 2/113 (1%)
Frame = +1
Query: 133 IQYVNNPMQSPQLQNTSIQGSPSQ-HSPMGTQSQVAKVGQGGAGDQSSQLLSR-PRLQEL 306
I+ N + ++ + I G Q + MG ++ V ++ D++ + R +L+E
Sbjct: 484 IRVAENLKRQTEIAESKIAGFQEQIDAAMGAEAMVTQLT-----DKNFNMEERIMQLEET 538
Query: 307 VREVDPTVQLDEEVEEMLLQLADDFIDTTLNSACALAKHRHAPNVELRDVQLH 465
+ +++ LDE++ E+ Q D + L H H N +RD Q H
Sbjct: 539 IEDMEEARDLDEQLAEVQKQQVKDL----MKEIEQLKIHIHELNGRIRDEQKH 587
>AJ131742-1|CAA10498.1| 590|Caenorhabditis elegans protein (
Caenorhabditis elegansmRNA for dystrobrevin. ).
Length = 590
Score = 28.3 bits (60), Expect = 3.4
Identities = 19/71 (26%), Positives = 29/71 (40%), Gaps = 2/71 (2%)
Frame = +1
Query: 250 GGAGDQSSQLLSRPRLQELVREVDPTV--QLDEEVEEMLLQLADDFIDTTLNSACALAKH 423
GG G + P + V P V ++ + ++EM LQ D T +AC L
Sbjct: 6 GGGGPREPSSAPSPDHHRAMHSVPPIVASEMQQLIDEMRLQDFDSIRFATYRAACKLRFI 65
Query: 424 RHAPNVELRDV 456
+ V L D+
Sbjct: 66 QQKTKVHLVDI 76
>AF098989-4|AAK18956.2| 590|Caenorhabditis elegans Dystrobrevin
homolog protein 1 protein.
Length = 590
Score = 28.3 bits (60), Expect = 3.4
Identities = 19/71 (26%), Positives = 29/71 (40%), Gaps = 2/71 (2%)
Frame = +1
Query: 250 GGAGDQSSQLLSRPRLQELVREVDPTV--QLDEEVEEMLLQLADDFIDTTLNSACALAKH 423
GG G + P + V P V ++ + ++EM LQ D T +AC L
Sbjct: 6 GGGGPREPSSAPSPDHHRAMHSVPPIVASEMQQLIDEMRLQDFDSIRFATYRAACKLRFI 65
Query: 424 RHAPNVELRDV 456
+ V L D+
Sbjct: 66 QQKTKVHLVDI 76
>Z50874-6|CAA90765.1| 759|Caenorhabditis elegans Hypothetical
protein R10E4.4 protein.
Length = 759
Score = 27.5 bits (58), Expect = 6.0
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = +1
Query: 319 DPTVQLDEEVEEMLLQLADDFIDTTLNSACAL 414
D V + E +E+ + +A I TTLNS C++
Sbjct: 452 DDRVAIHEAMEQQTISIAKAGITTTLNSRCSV 483
>AC024763-4|AAF60519.1| 1347|Caenorhabditis elegans Temporarily
assigned gene nameprotein 168 protein.
Length = 1347
Score = 27.1 bits (57), Expect = 8.0
Identities = 16/37 (43%), Positives = 19/37 (51%)
Frame = +1
Query: 157 QSPQLQNTSIQGSPSQHSPMGTQSQVAKVGQGGAGDQ 267
Q Q + QGS SQ P+G S G GGAG+Q
Sbjct: 1097 QGSMAQGSMGQGSMSQ-GPIGIPSSSGIGGMGGAGNQ 1132
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,616,338
Number of Sequences: 27780
Number of extensions: 191973
Number of successful extensions: 755
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 711
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 754
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 996506972
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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