Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV30198
(516 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_34219| Best HMM Match : No HMM Matches (HMM E-Value=.) 205 1e-53
SB_36368| Best HMM Match : 14-3-3 (HMM E-Value=0) 196 9e-51
SB_34217| Best HMM Match : No HMM Matches (HMM E-Value=.) 75 3e-14
SB_37955| Best HMM Match : 14-3-3 (HMM E-Value=6.5861e-44) 49 2e-06
SB_23213| Best HMM Match : SH3_1 (HMM E-Value=9.2e-12) 31 0.56
SB_10602| Best HMM Match : RVT_1 (HMM E-Value=1.3e-10) 30 0.98
SB_13504| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.0
SB_12646| Best HMM Match : SSrecog (HMM E-Value=0) 28 4.0
SB_3346| Best HMM Match : Spectrin (HMM E-Value=0.012) 28 5.3
SB_7335| Best HMM Match : TSP_1 (HMM E-Value=0) 27 6.9
SB_43620| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.9
SB_33946| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.9
>SB_34219| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 309
Score = 205 bits (501), Expect = 1e-53
Identities = 106/174 (60%), Positives = 125/174 (71%), Gaps = 4/174 (2%)
Frame = +2
Query: 2 KQQMAKEYRVKVEKELREICYDVLGLLDKHLIPKASNPESKVFYLKMKGDYYRYLAEVAT 181
K+Q + YR +E EL E+C VL LL+ LIP A + ESKVFYLKMKGDYYRY EVA
Sbjct: 54 KKQNTETYRQTIENELNEVCETVLKLLESKLIPNAQSTESKVFYLKMKGDYYRYEGEVAG 113
Query: 182 GETRHSVVEDSQKAYQDAFEISKA--KMQPTHPIRLGLALNFSVFYYEILNSPDKACQLA 355
+ R VV+ + KAY +A EI++ K+ PT PIRLGLALNFSVFYYEI+ +AC LA
Sbjct: 114 ADRRREVVQKAMKAYSEAQEIAEKDPKLPPTDPIRLGLALNFSVFYYEIVEDSKQACDLA 173
Query: 356 KQAFDDAIAELDTLNEDSYKDSTLIMQLLRDNLTLWTSDTQG--DGDEPAEGGD 511
K+AFDDAIAELDTL+ED YKDSTLIMQLLRDNLT+ Q + E AE GD
Sbjct: 174 KKAFDDAIAELDTLSEDQYKDSTLIMQLLRDNLTVVEKALQAYKEAKEAAETGD 227
Score = 138 bits (335), Expect = 2e-33
Identities = 69/103 (66%), Positives = 86/103 (83%), Gaps = 4/103 (3%)
Frame = +2
Query: 197 SVVEDSQKAYQDAFEISKA---KMQPTHPIRLGLALNFSVFYYEILNSPDKACQLAKQAF 367
+VVE + +AY++A E ++ K+ PT PIRLGLALNFSVF+YEI + ++AC+LAKQAF
Sbjct: 207 TVVEKALQAYKEAKEAAETGDGKLAPTDPIRLGLALNFSVFHYEIQENQEEACKLAKQAF 266
Query: 368 DDAIAELDTLNEDSYKDSTLIMQLLRDNLTLWTSDTQGD-GDE 493
DDAIAELD+LNED YKDSTLIMQLLRDNLTLW+S+ Q D GD+
Sbjct: 267 DDAIAELDSLNEDQYKDSTLIMQLLRDNLTLWSSENQEDQGDD 309
>SB_36368| Best HMM Match : 14-3-3 (HMM E-Value=0)
Length = 248
Score = 196 bits (478), Expect = 9e-51
Identities = 94/164 (57%), Positives = 122/164 (74%), Gaps = 3/164 (1%)
Frame = +2
Query: 11 MAKEYRVKVEKELREICYDVLGLLDKHLIPKAS---NPESKVFYLKMKGDYYRYLAEVAT 181
+ K+YR + EL C +VL +L+ +L+ N E+KVFYLKM+GDY+RYL EVA
Sbjct: 84 LTKKYREDITNELNGKCAEVLDILENYLLKDGQDDINTEAKVFYLKMRGDYHRYLVEVAE 143
Query: 182 GETRHSVVEDSQKAYQDAFEISKAKMQPTHPIRLGLALNFSVFYYEILNSPDKACQLAKQ 361
G++R +E S++AY+DA ++ P+HPIRLGLALNFSVFYYEI N P +AC+LAK+
Sbjct: 144 GDSRKENIEKSREAYKDA-SAKAEELSPSHPIRLGLALNFSVFYYEIENKPPEACKLAKE 202
Query: 362 AFDDAIAELDTLNEDSYKDSTLIMQLLRDNLTLWTSDTQGDGDE 493
AFDDAIA LD L ++SYKDSTLIMQLLRDNLTLWTS+ +G +
Sbjct: 203 AFDDAIAVLDNLKDESYKDSTLIMQLLRDNLTLWTSEQDQEGQD 246
>SB_34217| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 219
Score = 75.4 bits (177), Expect = 3e-14
Identities = 32/59 (54%), Positives = 48/59 (81%)
Frame = +2
Query: 11 MAKEYRVKVEKELREICYDVLGLLDKHLIPKASNPESKVFYLKMKGDYYRYLAEVATGE 187
+ K+Y+ +EKEL+++C +VLG+L++ LIP A + E+KVFY K+KGDYYRYLAE + G+
Sbjct: 158 IVKKYKACIEKELKDLCKEVLGILER-LIPGAEDEENKVFYFKLKGDYYRYLAEFSHGQ 215
>SB_37955| Best HMM Match : 14-3-3 (HMM E-Value=6.5861e-44)
Length = 251
Score = 49.2 bits (112), Expect = 2e-06
Identities = 22/47 (46%), Positives = 32/47 (68%)
Frame = +2
Query: 2 KQQMAKEYRVKVEKELREICYDVLGLLDKHLIPKASNPESKVFYLKM 142
K +M + YR +E+EL+ IC ++L LLD LI + + ESKVFY K+
Sbjct: 79 KLEMIRNYRKTIEEELKTICGEILSLLDDSLIKNSQSEESKVFYNKI 125
>SB_23213| Best HMM Match : SH3_1 (HMM E-Value=9.2e-12)
Length = 979
Score = 31.1 bits (67), Expect = 0.56
Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 3/49 (6%)
Frame = +2
Query: 368 DDAIAELDTLNEDSYKDSTLIMQL---LRDNLTLWTSDTQGDGDEPAEG 505
DD + D ++DS + + QL L+ + LW S TQGD D A G
Sbjct: 850 DDDDFDTDEWSDDSDAEGSAAGQLKLCLKREILLWKSGTQGDADRRATG 898
>SB_10602| Best HMM Match : RVT_1 (HMM E-Value=1.3e-10)
Length = 416
Score = 30.3 bits (65), Expect = 0.98
Identities = 16/62 (25%), Positives = 31/62 (50%)
Frame = +2
Query: 68 VLGLLDKHLIPKASNPESKVFYLKMKGDYYRYLAEVATGETRHSVVEDSQKAYQDAFEIS 247
+LGL++ H+ PK+ + ++F +Y+ +L V T+ +E + Y + S
Sbjct: 116 ILGLIESHIDPKSFH--HRMFLAACCLEYFGFLRSVEFTVTQEKCIEQNMPLYAVFIDFS 173
Query: 248 KA 253
KA
Sbjct: 174 KA 175
>SB_13504| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 4924
Score = 28.7 bits (61), Expect = 3.0
Identities = 19/53 (35%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Frame = +2
Query: 176 ATGETRHS-VVEDSQKAYQDAFEISKAKMQPTHPIRLGLALNFSVFYYEILNS 331
A GETR + D+ +A +D KA+ Q + ALN S+F++E++NS
Sbjct: 4020 ALGETRRKRSLVDTPEANED-----KAQHQVPDAEKCQFALNASLFFFEVINS 4067
>SB_12646| Best HMM Match : SSrecog (HMM E-Value=0)
Length = 783
Score = 28.3 bits (60), Expect = 4.0
Identities = 11/34 (32%), Positives = 22/34 (64%)
Frame = +2
Query: 2 KQQMAKEYRVKVEKELREICYDVLGLLDKHLIPK 103
K++M ++Y K+EKE+ Y+++ L K ++ K
Sbjct: 292 KEEMKEKYDGKIEKEMSGAIYEIISRLMKAVVGK 325
>SB_3346| Best HMM Match : Spectrin (HMM E-Value=0.012)
Length = 983
Score = 27.9 bits (59), Expect = 5.3
Identities = 17/58 (29%), Positives = 27/58 (46%)
Frame = +2
Query: 311 YYEILNSPDKACQLAKQAFDDAIAELDTLNEDSYKDSTLIMQLLRDNLTLWTSDTQGD 484
YY I + K Q FDD + +ED+ +D+T ++L+ T+D GD
Sbjct: 505 YYNIPYNKPKKNDFKLQLFDDYKQAVTQASEDTLRDATTAIELMNAP----TTDVHGD 558
>SB_7335| Best HMM Match : TSP_1 (HMM E-Value=0)
Length = 2681
Score = 27.5 bits (58), Expect = 6.9
Identities = 8/15 (53%), Positives = 10/15 (66%)
Frame = -2
Query: 290 PDPALWGVWAAFSPC 246
P P WG W+ +SPC
Sbjct: 2242 PPPPKWGEWSTWSPC 2256
>SB_43620| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1680
Score = 27.5 bits (58), Expect = 6.9
Identities = 8/15 (53%), Positives = 10/15 (66%)
Frame = -2
Query: 290 PDPALWGVWAAFSPC 246
P P WG W+ +SPC
Sbjct: 220 PPPPKWGEWSTWSPC 234
>SB_33946| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 50
Score = 27.5 bits (58), Expect = 6.9
Identities = 10/32 (31%), Positives = 18/32 (56%)
Frame = +2
Query: 62 YDVLGLLDKHLIPKASNPESKVFYLKMKGDYY 157
YD ++ HL+P A +++ +K+ DYY
Sbjct: 6 YDSNTVVSHHLLPSAQTRYIRIYPVKVNSDYY 37
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,045,596
Number of Sequences: 59808
Number of extensions: 302352
Number of successful extensions: 912
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 852
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 908
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1148326654
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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