Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30198
         (516 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor p...    26   0.26 
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    26   0.26 
DQ855484-1|ABH88171.1|  130|Apis mellifera chemosensory protein ...    21   7.5  
AF481963-1|AAN59784.1|  130|Apis mellifera antennal-specific pro...    21   7.5  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    21   10.0 

>AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor
           protein.
          Length = 139

 Score = 25.8 bits (54), Expect = 0.26
 Identities = 9/37 (24%), Positives = 16/37 (43%)
 Frame = -1

Query: 270 CVGCIFALLISKASWYAFCESSTTECLVSPVATSARY 160
           C  CI   + S   W  +C S+   C+ +  +   R+
Sbjct: 35  CRNCIHPTVFSVLFWLGYCNSAINPCIYALFSKDFRF 71


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 25.8 bits (54), Expect = 0.26
 Identities = 9/37 (24%), Positives = 16/37 (43%)
 Frame = -1

Query: 270 CVGCIFALLISKASWYAFCESSTTECLVSPVATSARY 160
           C  CI   + S   W  +C S+   C+ +  +   R+
Sbjct: 483 CRNCIHPTVFSVLFWLGYCNSAINPCIYALFSKDFRF 519


>DQ855484-1|ABH88171.1|  130|Apis mellifera chemosensory protein 3
           protein.
          Length = 130

 Score = 21.0 bits (42), Expect = 7.5
 Identities = 8/18 (44%), Positives = 14/18 (77%)
 Frame = +2

Query: 17  KEYRVKVEKELREICYDV 70
           K+YRVK E+E +++  +V
Sbjct: 113 KKYRVKFEEEAKKLGINV 130


>AF481963-1|AAN59784.1|  130|Apis mellifera antennal-specific
           protein 3c precursor protein.
          Length = 130

 Score = 21.0 bits (42), Expect = 7.5
 Identities = 8/18 (44%), Positives = 14/18 (77%)
 Frame = +2

Query: 17  KEYRVKVEKELREICYDV 70
           K+YRVK E+E +++  +V
Sbjct: 113 KKYRVKFEEEAKKLGINV 130


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 20.6 bits (41), Expect = 10.0
 Identities = 5/8 (62%), Positives = 8/8 (100%)
 Frame = +1

Query: 190 QTFCCRGF 213
           +TFCC+G+
Sbjct: 455 KTFCCKGY 462


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 127,808
Number of Sequences: 438
Number of extensions: 2499
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14354847
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)