Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30197
         (516 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292359-1|CAL23171.2|  436|Tribolium castaneum gustatory recept...    23   1.2  
S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Triboliu...    23   2.1  
AY584475-1|AAS93634.1|  209|Tribolium castaneum homothorax protein.    21   4.9  
AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.    21   4.9  
EF633444-1|ABR32189.1|  721|Tribolium castaneum heat shock prote...    21   6.5  

>AM292359-1|CAL23171.2|  436|Tribolium castaneum gustatory receptor
           candidate 38 protein.
          Length = 436

 Score = 23.4 bits (48), Expect = 1.2
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +2

Query: 161 TVQKFDGLCVLPLNIVNEKIYVFLWFWFM 247
           T+  F  + V+P   +N  IY+   FWFM
Sbjct: 206 TMAHFKIIQVVPYCYINCLIYLIGGFWFM 234


>S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Tribolium
           castaneum homeodomainprotein mRNA, complete cds. ).
          Length = 327

 Score = 22.6 bits (46), Expect = 2.1
 Identities = 9/33 (27%), Positives = 17/33 (51%)
 Frame = +2

Query: 59  VSFTEMEPEERVDPMARVFPKVTKCTFHKYGPS 157
           V  ++ EPE++ +    ++P    CT +   PS
Sbjct: 172 VDLSKSEPEKKTESQPMLWPAWVYCTRYSDRPS 204


>AY584475-1|AAS93634.1|  209|Tribolium castaneum homothorax protein.
          Length = 209

 Score = 21.4 bits (43), Expect = 4.9
 Identities = 7/16 (43%), Positives = 9/16 (56%)
 Frame = +3

Query: 63  ASQKWSPRNAWTRWPE 110
           A  KW PR  W+  P+
Sbjct: 115 AMGKWCPRREWSSPPD 130


>AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.
          Length = 456

 Score = 21.4 bits (43), Expect = 4.9
 Identities = 7/16 (43%), Positives = 9/16 (56%)
 Frame = +3

Query: 63  ASQKWSPRNAWTRWPE 110
           A  KW PR  W+  P+
Sbjct: 271 AMGKWCPRREWSSPPD 286


>EF633444-1|ABR32189.1|  721|Tribolium castaneum heat shock protein
           90 protein.
          Length = 721

 Score = 21.0 bits (42), Expect = 6.5
 Identities = 7/17 (41%), Positives = 13/17 (76%)
 Frame = +2

Query: 170 KFDGLCVLPLNIVNEKI 220
           KF+GLC +  +I++ K+
Sbjct: 556 KFEGLCKVMKSILDNKV 572


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 125,361
Number of Sequences: 336
Number of extensions: 2523
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 12363686
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)