Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV30197
(516 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_05_0222 + 19462487-19462663,19462916-19462991,19463106-194631... 30 1.3
12_02_1052 - 25698263-25698394,25698587-25698679,25698945-256989... 29 2.2
06_03_0969 - 26413534-26413594,26415020-26415318 29 2.9
03_05_0100 - 20779387-20779641,20779824-20780629,20780757-207810... 29 2.9
08_01_0539 + 4679392-4681282,4682060-4682104,4682403-4683560,468... 28 5.1
05_06_0277 + 26885621-26886064,26886148-26886317,26887038-268879... 28 5.1
03_02_0882 - 12121917-12124446,12124739-12124919,12125057-121251... 28 5.1
02_05_0656 + 30671152-30671227,30671330-30671464,30671591-306716... 28 5.1
12_01_1101 - 11602534-11603460,11615583-11615680,11615712-11616189 27 6.8
12_01_0372 + 2867471-2867775,2867805-2867901,2868539-2868916 27 6.8
05_01_0278 + 2156126-2156128,2157677-2158069 27 6.8
04_03_0170 - 12201550-12201851,12202017-12202201,12202267-12202478 27 6.8
04_01_0441 - 5750765-5750822,5750936-5751026,5751112-5751313,575... 27 8.9
01_06_0337 - 28535265-28535381,28535463-28535573,28535686-285358... 27 8.9
>01_05_0222 +
19462487-19462663,19462916-19462991,19463106-19463185,
19463293-19463342,19463436-19463520,19463640-19463738,
19464110-19464346
Length = 267
Score = 29.9 bits (64), Expect = 1.3
Identities = 15/34 (44%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Frame = +1
Query: 295 CRWTPRPSLLA-ARTQSPCATRANRSRSPQATDR 393
CR P L+ AR +SP +TR + ++SP A DR
Sbjct: 13 CRLVRLPLLVPYARRRSPLSTRCSAAQSPDAVDR 46
>12_02_1052 -
25698263-25698394,25698587-25698679,25698945-25698995,
25699074-25699258,25699361-25699407,25699704-25699918
Length = 240
Score = 29.1 bits (62), Expect = 2.2
Identities = 21/71 (29%), Positives = 33/71 (46%), Gaps = 3/71 (4%)
Frame = -3
Query: 277 QRNSTQDR*YHKPKPEEHVDLLVDD---IQWQNTQAIEFLHRTGWTVFMEGAFSYFRKHS 107
Q NS + PE H+D+LV+D N + ++F RTG ++ A+ R +
Sbjct: 143 QHNSPSQDMQPRLVPEAHLDVLVEDKCAKNQLNREKVQFQQRTGSRSYIAHAYVVQRGLA 202
Query: 106 GHRVHAFLGLH 74
+ A L LH
Sbjct: 203 LYSAFAALVLH 213
>06_03_0969 - 26413534-26413594,26415020-26415318
Length = 119
Score = 28.7 bits (61), Expect = 2.9
Identities = 19/48 (39%), Positives = 22/48 (45%)
Frame = -2
Query: 431 QCSSRVGTKRTSRRSVACGLRLRFALVAQGDCVRAASRDGRGVQRQRP 288
Q S +R SR + A R R AQG AA R RG Q +RP
Sbjct: 27 QGSPAAAARRRSRAARATA-RWRSRAAAQGSPAAAARRRSRGTQARRP 73
>03_05_0100 -
20779387-20779641,20779824-20780629,20780757-20781011,
20781107-20781221,20781301-20781353,20781517-20781777,
20782804-20782854,20783081-20783329,20784765-20784990,
20785968-20786132
Length = 811
Score = 28.7 bits (61), Expect = 2.9
Identities = 13/48 (27%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Frame = -3
Query: 229 EHVDLLVDDIQWQNTQAIEFLHR-TGWTVFMEGAFSYFRKHSGHRVHA 89
E++ + D+ + T + + R T + + +F+ + KHSGH V+A
Sbjct: 652 ENLQYYIRDVNFYTTGGDQHIFRSTSYASSIAESFASYEKHSGHAVYA 699
>08_01_0539 + 4679392-4681282,4682060-4682104,4682403-4683560,
4683834-4684204,4684290-4684835,4684927-4685027,
4685117-4685933,4686025-4686213,4686313-4686384,
4686477-4686587,4686647-4686652,4686694-4686794,
4687714-4687813,4687891-4687986,4688157-4688273,
4688367-4688492,4688566-4688619,4688745-4688992,
4689087-4689195,4689284-4689583,4689799-4689963
Length = 2240
Score = 27.9 bits (59), Expect = 5.1
Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Frame = +2
Query: 350 PQEQIEAVAR-KLQIGDWFVLYQLGKNIDPLIYKELMTELAEK 475
P++ + V +++GDW+ L G P Y EL ELA+K
Sbjct: 876 PKDHVCTVEELSVKVGDWYYLDGTGHERGPFSYSELQ-ELAKK 917
>05_06_0277 +
26885621-26886064,26886148-26886317,26887038-26887941,
26888544-26888575,26888862-26888928,26889116-26889173,
26889329-26889421,26890366-26890480,26890847-26890894,
26891012-26891057,26891161-26891231,26891865-26891870,
26891991-26892038,26892439-26892488,26892892-26893154
Length = 804
Score = 27.9 bits (59), Expect = 5.1
Identities = 14/37 (37%), Positives = 18/37 (48%)
Frame = +1
Query: 313 PSLLAARTQSPCATRANRSRSPQATDRRLVRFVPTRE 423
P +R++SP R SRSP +RL R RE
Sbjct: 305 PKQAQSRSRSPSPARKRESRSPSPRSKRLRRAQSERE 341
>03_02_0882 -
12121917-12124446,12124739-12124919,12125057-12125134,
12125731-12125764,12125864-12125975,12126053-12126238,
12126505-12126575
Length = 1063
Score = 27.9 bits (59), Expect = 5.1
Identities = 13/40 (32%), Positives = 18/40 (45%)
Frame = +1
Query: 304 TPRPSLLAARTQSPCATRANRSRSPQATDRRLVRFVPTRE 423
TP+ A + SP RA R+ SP + L P R+
Sbjct: 609 TPKTGTAAEKRNSPVPQRARRNSSPPVLPKELTPKAPARK 648
>02_05_0656 +
30671152-30671227,30671330-30671464,30671591-30671676,
30672184-30672278,30672431-30672556,30672659-30672809
Length = 222
Score = 27.9 bits (59), Expect = 5.1
Identities = 10/24 (41%), Positives = 18/24 (75%)
Frame = +2
Query: 395 DWFVLYQLGKNIDPLIYKELMTEL 466
+W +LY++GK+ D L+ KE + E+
Sbjct: 179 EWKILYKIGKDKDGLLRKEAVREV 202
>12_01_1101 - 11602534-11603460,11615583-11615680,11615712-11616189
Length = 500
Score = 27.5 bits (58), Expect = 6.8
Identities = 12/43 (27%), Positives = 22/43 (51%)
Frame = -3
Query: 226 HVDLLVDDIQWQNTQAIEFLHRTGWTVFMEGAFSYFRKHSGHR 98
H + V+ Q N +A + HR GW +F++ + +H H+
Sbjct: 113 HSVIFVNHDQCPNWRAANY-HREGWFMFLDFPLDFIDRHHVHQ 154
>12_01_0372 + 2867471-2867775,2867805-2867901,2868539-2868916
Length = 259
Score = 27.5 bits (58), Expect = 6.8
Identities = 14/41 (34%), Positives = 19/41 (46%)
Frame = +3
Query: 306 PASVSTCCAHAVALRHKSKSKP*PASYRSATGSFCTNSGRT 428
P S+C +H + RH A+ SA GSF + S T
Sbjct: 8 PPPPSSCLSHGLLRRHHRSGSSAAATAYSAAGSFASASAFT 48
>05_01_0278 + 2156126-2156128,2157677-2158069
Length = 131
Score = 27.5 bits (58), Expect = 6.8
Identities = 14/35 (40%), Positives = 18/35 (51%), Gaps = 3/35 (8%)
Frame = +2
Query: 146 YGPSGTVQKFDGLCVLPLNIVNEKIYVF---LWFW 241
YGP+G FDGL P + + + F LWFW
Sbjct: 8 YGPAGEAVGFDGLRE-PEVVAGDAVVAFKTALWFW 41
>04_03_0170 - 12201550-12201851,12202017-12202201,12202267-12202478
Length = 232
Score = 27.5 bits (58), Expect = 6.8
Identities = 15/49 (30%), Positives = 21/49 (42%)
Frame = -3
Query: 226 HVDLLVDDIQWQNTQAIEFLHRTGWTVFMEGAFSYFRKHSGHRVHAFLG 80
H V+ Q N +A F HR GW +F++ + H H A G
Sbjct: 86 HPGTFVNHDQGPNWRAANF-HREGWFMFLDFPLDFIDLHHVHLAVASFG 133
>04_01_0441 -
5750765-5750822,5750936-5751026,5751112-5751313,
5751392-5752033,5752175-5752409,5752500-5752619,
5752864-5753282
Length = 588
Score = 27.1 bits (57), Expect = 8.9
Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Frame = -3
Query: 238 KPEEHVDLLVDDIQWQNTQAIEFLHRTGWTVFMEGAFSYFRKH-SGHRV 95
KP+ V+LLVD ++ Q E + +F + YFR H GH +
Sbjct: 214 KPDLQVNLLVDAVEGVAKQKGETGYSALRRIFRQRLVDYFRDHPEGHDI 262
>01_06_0337 -
28535265-28535381,28535463-28535573,28535686-28535840,
28536121-28536230,28536607-28536703,28536878-28537031,
28537260-28537313,28537528-28537588,28537915-28537984,
28538079-28538163,28538325-28538423,28538553-28538639
Length = 399
Score = 27.1 bits (57), Expect = 8.9
Identities = 17/37 (45%), Positives = 20/37 (54%), Gaps = 5/37 (13%)
Frame = +2
Query: 356 EQIEAVARKLQIGDWFVLY-QLGKNI----DPLIYKE 451
EQ V RKLQ+ D FVL GKN+ P YK+
Sbjct: 267 EQFRKVGRKLQLIDGFVLLSDAGKNVIISNQPYFYKK 303
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,565,543
Number of Sequences: 37544
Number of extensions: 303179
Number of successful extensions: 920
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 892
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 920
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1118831240
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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