Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30197
         (516 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g02360.1 68414.m00182 chitinase, putative similar to chitinas...    30   0.80 
At3g54420.1 68416.m06019 class IV chitinase (CHIV) almost identi...    29   1.4  
At4g14350.2 68417.m02211 protein kinase family protein contains ...    29   2.5  
At4g14350.1 68417.m02210 protein kinase family protein contains ...    29   2.5  
At3g23310.1 68416.m02940 protein kinase, putative contains prote...    29   2.5  
At4g32820.1 68417.m04668 expressed protein ; expression supporte...    27   5.7  
At4g15180.1 68417.m02328 SET domain-containing protein contains ...    27   5.7  
At1g77410.1 68414.m09015 beta-galactosidase, putative / lactase,...    27   5.7  
At1g70680.1 68414.m08148 caleosin-related family protein similar...    27   7.5  
At1g69880.1 68414.m08042 thioredoxin, putative similar to SP|Q38...    27   9.9  

>At1g02360.1 68414.m00182 chitinase, putative similar to chitinase
           precursor GI:5880845 from [Petroselinum crispum]
          Length = 272

 Score = 30.3 bits (65), Expect = 0.80
 Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 3/37 (8%)
 Frame = +2

Query: 140 HKYGPSGTVQKFDGLCVLPLNIVNEKIYVF---LWFW 241
           + YGP+G    FDGL   P  + N  +  F   LWFW
Sbjct: 152 YNYGPAGRALGFDGL-RNPETVSNNSVIAFQTALWFW 187


>At3g54420.1 68416.m06019 class IV chitinase (CHIV) almost identical
           to class IV chitinase from GI:2597826 [Arabidopsis
           thaliana]
          Length = 273

 Score = 29.5 bits (63), Expect = 1.4
 Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 3/35 (8%)
 Frame = +2

Query: 146 YGPSGTVQKFDGLCVLPLNIVNEKIYVF---LWFW 241
           YGP+GT   FDGL   P  +  + +  F   LW+W
Sbjct: 183 YGPAGTAIGFDGLNA-PETVATDPVISFKTALWYW 216


>At4g14350.2 68417.m02211 protein kinase family protein contains
           similarity to Swiss-Prot:O13310 serine/threonine-protein
           kinase orb6 [Schizosaccharomyces pombe]
          Length = 551

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = +2

Query: 395 DWFVLYQLGKNIDPLIYKELMTELAEKFEGNDK 493
           +W  LYQ+     P +  EL T+  EKFE  DK
Sbjct: 422 EWGKLYQMKAAFIPQVNDELDTQNFEKFEETDK 454


>At4g14350.1 68417.m02210 protein kinase family protein contains
           similarity to Swiss-Prot:O13310 serine/threonine-protein
           kinase orb6 [Schizosaccharomyces pombe]
          Length = 551

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = +2

Query: 395 DWFVLYQLGKNIDPLIYKELMTELAEKFEGNDK 493
           +W  LYQ+     P +  EL T+  EKFE  DK
Sbjct: 422 EWGKLYQMKAAFIPQVNDELDTQNFEKFEETDK 454


>At3g23310.1 68416.m02940 protein kinase, putative contains protein
           kinase domain, Pfam:PF00069
          Length = 568

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = +2

Query: 395 DWFVLYQLGKNIDPLIYKELMTELAEKFEGNDK 493
           +W  LYQ+     P +  EL T+  EKFE  DK
Sbjct: 425 EWEKLYQMKAAFIPQVNDELDTQNFEKFEETDK 457


>At4g32820.1 68417.m04668 expressed protein ; expression supported by
            MPSS
          Length = 1817

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 26/95 (27%), Positives = 41/95 (43%), Gaps = 6/95 (6%)
 Frame = -3

Query: 352  WRKATACAQQVETDAGSSDNG--HAV*QRNST-QDR*YHKPKPEEHVDLLVDDIQWQNTQ 182
            WRK +A +Q+VET    S      ++   NS  Q    H+     + D L   + + + +
Sbjct: 1121 WRKNSALSQRVETSRRRSRRCLLMSLALANSPDQQSEIHELLALVYYDSLQSVVPFYDQR 1180

Query: 181  AIEFLHRTGWTVFMEGAFSYFRKHSGHR---VHAF 86
            ++       WT F E +  +F K   HR    HAF
Sbjct: 1181 SVLPSKDATWTRFCENSMKHFNKAFSHRQDWSHAF 1215


>At4g15180.1 68417.m02328 SET domain-containing protein contains Pfam
            profile PF00856: SET domain
          Length = 2326

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 14/32 (43%), Positives = 18/32 (56%)
 Frame = +2

Query: 380  KLQIGDWFVLYQLGKNIDPLIYKELMTELAEK 475
            +L IGDWF     G+   PL + EL  +L EK
Sbjct: 977  QLHIGDWFYTDGAGQEQGPLSFSELQ-KLVEK 1007


>At1g77410.1 68414.m09015 beta-galactosidase, putative / lactase,
           putative similar to beta-galactosidase SP:P45582 from
           [Asparagus officinalis]
          Length = 815

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
 Frame = -3

Query: 139 EGAFSYFR-KHSGHRVHAFLGLHFCEADHVTAIS*KFSVQKEV 14
           EGA S  +  H GH +HAF+   F  + H T  + +F ++K +
Sbjct: 480 EGAPSVLKVNHLGHALHAFVNGRFIGSMHGTFKAHRFLLEKNM 522


>At1g70680.1 68414.m08148 caleosin-related family protein similar to
           Ca+2-binding EF hand protein GB:AAB71227 [Glycine max];
           contains Pfam profilePF05042: Caleosin related protein
          Length = 192

 Score = 27.1 bits (57), Expect = 7.5
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = +2

Query: 383 LQIGDWFVLYQLGKNIDPLIYKELM 457
           L  G+W VLY L K+   L++KE++
Sbjct: 147 LAFGEWKVLYNLCKDKSGLLHKEIV 171


>At1g69880.1 68414.m08042 thioredoxin, putative similar to SP|Q38879
           Thioredoxin H-type 2 (TRX-H-2) {Arabidopsis thaliana};
           contains Pfam profile: PF00085 Thioredoxin
          Length = 148

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 11/27 (40%), Positives = 14/27 (51%), Gaps = 2/27 (7%)
 Frame = +1

Query: 274 FVIPHGRCR--WTPRPSLLAARTQSPC 348
           F + H R    WTPRP +   +  SPC
Sbjct: 12  FQVTHFRSTKPWTPRPEIYPFKVNSPC 38


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,618,232
Number of Sequences: 28952
Number of extensions: 238664
Number of successful extensions: 666
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 653
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 665
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 937669760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)