Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV30195
(516 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_27757| Best HMM Match : No HMM Matches (HMM E-Value=.) 83 1e-16
SB_50597| Best HMM Match : 7tm_1 (HMM E-Value=2.59941e-42) 29 2.3
SB_45684| Best HMM Match : T-box (HMM E-Value=1.5e-32) 28 4.0
SB_9321| Best HMM Match : DDE (HMM E-Value=5.40004e-41) 28 5.3
SB_38407| Best HMM Match : DDE (HMM E-Value=5.40004e-41) 28 5.3
SB_9147| Best HMM Match : Sushi (HMM E-Value=0) 28 5.3
SB_41383| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.2
SB_36850| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.2
SB_23490| Best HMM Match : DDE (HMM E-Value=2.1e-33) 27 9.2
SB_5056| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.2
>SB_27757| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 344
Score = 83.0 bits (196), Expect = 1e-16
Identities = 40/94 (42%), Positives = 60/94 (63%)
Frame = +1
Query: 142 PGSGVPRQQIRLNQLHLTKFRLKYAFTAPTRLVRKAWTDAKLNEKWTESQWAQKLANKEK 321
P GV RQ I + L LT F++K +A + V+KA+ A++ +KW ++ WA+KLA ++K
Sbjct: 249 PHGGVCRQAINMKHLSLTDFKIKIGRSARSGPVKKAFEAAQVQDKWEQTAWARKLAMRKK 308
Query: 322 RAQMTDYDRFKLTAARVKRNRARTAVFKSLKVKA 423
RA + D+DRFKL A+ K+NR K LK +A
Sbjct: 309 RATLNDFDRFKLKLAKQKKNRLLRTEVKKLKKEA 342
>SB_50597| Best HMM Match : 7tm_1 (HMM E-Value=2.59941e-42)
Length = 347
Score = 29.1 bits (62), Expect = 2.3
Identities = 14/43 (32%), Positives = 23/43 (53%)
Frame = -2
Query: 215 AYLRRNFVRWSWFKRICCLGTPLPGPSTSARVWSITSTTLTNF 87
AY+ R++ WS+ K C + P+ S S + +IT TL +
Sbjct: 87 AYIIRDYFSWSFGKIACQIIIPMNDVSFSVSICTITVITLERY 129
>SB_45684| Best HMM Match : T-box (HMM E-Value=1.5e-32)
Length = 337
Score = 28.3 bits (60), Expect = 4.0
Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Frame = +1
Query: 58 ALVADGPLKGKLVSVVDVIDQTRALVDGPGSGVPRQQIR-LNQLHLTKF 201
+L+ D L + VS VDV + A+VD P + RQ ++ ++ H F
Sbjct: 70 SLIGDYDLFAREVSTVDVRIASHAIVDRPRASWKRQSLKGISNFHFLAF 118
>SB_9321| Best HMM Match : DDE (HMM E-Value=5.40004e-41)
Length = 700
Score = 27.9 bits (59), Expect = 5.3
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = -2
Query: 236 RRVGAVNAYLRRNFVRWSWFKRICCLGTPLPGP 138
+RV +AY N + W W++R+ G + GP
Sbjct: 122 KRVCTRSAYSDINRLAWQWYERMRAQGNQISGP 154
>SB_38407| Best HMM Match : DDE (HMM E-Value=5.40004e-41)
Length = 700
Score = 27.9 bits (59), Expect = 5.3
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = -2
Query: 236 RRVGAVNAYLRRNFVRWSWFKRICCLGTPLPGP 138
+RV +AY N + W W++R+ G + GP
Sbjct: 122 KRVCTRSAYSDINRLAWQWYERMRAQGNQISGP 154
>SB_9147| Best HMM Match : Sushi (HMM E-Value=0)
Length = 1656
Score = 27.9 bits (59), Expect = 5.3
Identities = 25/82 (30%), Positives = 35/82 (42%)
Frame = -2
Query: 251 HAFLTRRVGAVNAYLRRNFVRWSWFKRICCLGTPLPGPSTSARVWSITSTTLTNFPFKGP 72
HA++T G V YL + V +S + +G P+ + S WS T P GP
Sbjct: 1194 HAYITFPRGKVGRYLEGDMVYFSCYNGYFLVGIPVIKCNKS---WSKVEFTCNPVPC-GP 1249
Query: 71 SATRATRPGSTYRAKGMTFLQR 6
A G + + G TF QR
Sbjct: 1250 LPLPAR--GGSASSTGTTFSQR 1269
>SB_41383| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1995
Score = 27.1 bits (57), Expect = 9.2
Identities = 11/35 (31%), Positives = 14/35 (40%)
Frame = -2
Query: 206 RRNFVRWSWFKRICCLGTPLPGPSTSARVWSITST 102
R N W WF R + P+ GP A+ T
Sbjct: 74 RINDAIWEWFTRCRAMNIPITGPMIQAQALKYAET 108
>SB_36850| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1008
Score = 27.1 bits (57), Expect = 9.2
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = +3
Query: 165 TDPLKPTPSHKIPPQIRVHSPYSSCEESVDRC 260
T P P PS + P I + + +S + S+D C
Sbjct: 168 TQPTNPIPSLRQPKNIPLSTSVTSAKSSLDHC 199
>SB_23490| Best HMM Match : DDE (HMM E-Value=2.1e-33)
Length = 497
Score = 27.1 bits (57), Expect = 9.2
Identities = 11/35 (31%), Positives = 14/35 (40%)
Frame = -2
Query: 206 RRNFVRWSWFKRICCLGTPLPGPSTSARVWSITST 102
R N W WF R + P+ GP A+ T
Sbjct: 72 RINDAIWEWFTRCRAMNIPITGPMIQAQALKYAET 106
>SB_5056| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 726
Score = 27.1 bits (57), Expect = 9.2
Identities = 17/69 (24%), Positives = 30/69 (43%)
Frame = +1
Query: 136 DGPGSGVPRQQIRLNQLHLTKFRLKYAFTAPTRLVRKAWTDAKLNEKWTESQWAQKLANK 315
D G G R + LN +H+ + Y +V + TDA+ + W E +W K+
Sbjct: 456 DVSGGGGDRNCVVLNDIHIDI--MDY-------IVPASCTDAEFRQMWAEFEWENKVTVN 506
Query: 316 EKRAQMTDY 342
+ + +Y
Sbjct: 507 TNISDLREY 515
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,105,126
Number of Sequences: 59808
Number of extensions: 343159
Number of successful extensions: 991
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 893
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 989
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1148326654
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -