Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30194
         (516 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF125969-2|AAD14761.1|  613|Caenorhabditis elegans Caenorhabditi...    30   0.85 
L40996-1|AAA86431.1|  593|Caenorhabditis elegans GTP-binding pro...    27   8.0  

>AF125969-2|AAD14761.1|  613|Caenorhabditis elegans Caenorhabditis
           gtp-binding proteinprotein 1 protein.
          Length = 613

 Score = 30.3 bits (65), Expect = 0.85
 Identities = 18/46 (39%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
 Frame = -3

Query: 466 GELGTGPPLEKVWQERAEQFGGRQKARLPKWFGERP--GKKKGELE 335
           G + +  P E + Q+RA+Q  GRQK    K  G +P  GK K ++E
Sbjct: 546 GTVSSVVPQESLAQQRAKQKDGRQKQYGKKSMGPKPPNGKPKEKIE 591


>L40996-1|AAA86431.1|  593|Caenorhabditis elegans GTP-binding
           protein protein.
          Length = 593

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = -3

Query: 466 GELGTGPPLEKVWQERAEQFGGRQKARLPKWFGERP 359
           G + +  P E + Q+RA+Q  GRQK    K  G +P
Sbjct: 546 GTVSSVVPQESLAQQRAKQKDGRQKQYGKKSMGPKP 581


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,429,091
Number of Sequences: 27780
Number of extensions: 105423
Number of successful extensions: 397
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 392
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 397
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 996506972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)