Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30194
         (516 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g25090.1 68418.m02973 plastocyanin-like domain-containing pro...    31   0.46 
At3g43800.1 68416.m04681 glutathione S-transferase, putative glu...    29   1.9  
At2g25060.1 68415.m02997 plastocyanin-like domain-containing pro...    27   9.9  

>At5g25090.1 68418.m02973 plastocyanin-like domain-containing
           protein
          Length = 186

 Score = 31.1 bits (67), Expect = 0.46
 Identities = 14/43 (32%), Positives = 22/43 (51%)
 Frame = -1

Query: 510 VVKRRPVNCNTTHYRANWVPGPPSRRCGKRGPNSSAAGKRRDC 382
           V K   +NCNTT+  AN+  G    +  + GP    +G + +C
Sbjct: 74  VTKDAYINCNTTNPAANYSNGDTKVKLERSGPYFFISGSKSNC 116


>At3g43800.1 68416.m04681 glutathione S-transferase, putative
           glutathione transferase, papaya, PIR:T09781
          Length = 227

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 10/14 (71%), Positives = 12/14 (85%)
 Frame = +3

Query: 87  KLMDWLQNCRTRPA 128
           KLMDW++ C TRPA
Sbjct: 186 KLMDWIRKCLTRPA 199


>At2g25060.1 68415.m02997 plastocyanin-like domain-containing
           protein
          Length = 182

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 13/44 (29%), Positives = 20/44 (45%)
 Frame = -1

Query: 513 DVVKRRPVNCNTTHYRANWVPGPPSRRCGKRGPNSSAAGKRRDC 382
           +V K    +CNTT+  AN+  G    +  + GP    +G    C
Sbjct: 78  EVTKEAYNSCNTTNPLANYTDGETKVKLDRSGPFYFISGANGHC 121


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,942,005
Number of Sequences: 28952
Number of extensions: 96796
Number of successful extensions: 254
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 250
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 254
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 937669760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)