Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30191
         (516 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC553.04 |cyp9||WD repeat containing cyclophilin family peptid...    28   0.95 
SPAC4G8.09 |||mitochondrial leucine-tRNA ligase|Schizosaccharomy...    27   2.2  
SPBC947.05c |||ferric-chelate reductase |Schizosaccharomyces pom...    26   3.8  
SPBC21H7.05 |sfc6||transcription factor TFIIIC complex subunit S...    25   6.7  
SPCC737.03c |||conserved eukaryotic protein|Schizosaccharomyces ...    25   8.9  
SPBC28E12.03 |rga4||GTPase activating protein Rga4|Schizosacchar...    25   8.9  
SPBC32H8.06 |mug93||TPR repeat protein, meiotically spliced|Schi...    25   8.9  

>SPCC553.04 |cyp9||WD repeat containing cyclophilin family
           peptidyl-prolyl cis-trans isomerase
           Cyp9|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 610

 Score = 27.9 bits (59), Expect = 0.95
 Identities = 15/57 (26%), Positives = 25/57 (43%)
 Frame = +1

Query: 217 PFEIVFHDKMIADLRYRLNNHRKPVPPLEGIGFEYGFNSNILDGWLQYWAEEYPFKE 387
           P    F      ++ Y +  H  PV  L  +     F S  + G ++YW+ E PF++
Sbjct: 158 PLIFFFESGGDGEVLYTVKKHTAPVHCLRYLSTLDCFLSIDIGGMVEYWSPEEPFQK 214


>SPAC4G8.09 |||mitochondrial leucine-tRNA ligase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 874

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 9/25 (36%), Positives = 12/25 (48%)
 Frame = +1

Query: 337 ILDGWLQYWAEEYPFKEREIFLNKY 411
           I + W  YW   YPF + +    KY
Sbjct: 37  IAENWKSYWKSHYPFVKNDKGKKKY 61


>SPBC947.05c |||ferric-chelate reductase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 564

 Score = 25.8 bits (54), Expect = 3.8
 Identities = 14/54 (25%), Positives = 24/54 (44%)
 Frame = -1

Query: 291 HGFAMIIKSISEVRYHLVMENDLKGSYAGIIVVFRAFRSPPSVRIQLVCWFCIL 130
           HG   +I S    +  L  +  + G +  +++      S PSVR +   WF +L
Sbjct: 164 HGILFMIFSAQSYKPLLYDKISIYGYFITVVLFLMTVASLPSVRRKFFEWFFVL 217


>SPBC21H7.05 |sfc6||transcription factor TFIIIC complex subunit
           Sfc6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 582

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 7/23 (30%), Positives = 16/23 (69%)
 Frame = -2

Query: 233 KTISKGRMLVSLWYFVHSGPHQA 165
           ++++KGR L+ +W +  + P Q+
Sbjct: 110 ESLNKGRRLIEIWKYYETAPGQS 132


>SPCC737.03c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 615

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 14/37 (37%), Positives = 18/37 (48%)
 Frame = +3

Query: 345 WLASILGRRVSL*GKGNILEQIPPICDQHTGIGHTFY 455
           W  SI      +  KG+IL+  PP   Q  G+G  FY
Sbjct: 46  WTCSICEATNHIDEKGDILDYRPPTPTQDKGVG-PFY 81


>SPBC28E12.03 |rga4||GTPase activating protein
           Rga4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 933

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +1

Query: 232 FHDKMIADLRYRLNNHRKPVPP 297
           F  +++ADL YRL+  RK   P
Sbjct: 520 FKQELVADLNYRLDYLRKSFQP 541


>SPBC32H8.06 |mug93||TPR repeat protein, meiotically
           spliced|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 383

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 9/31 (29%), Positives = 17/31 (54%)
 Frame = -2

Query: 464 LYLIKCMSNPCMLVTYWGYLFKNISLSLKGY 372
           LY+IK +S PC+ +  + +    I+   K +
Sbjct: 252 LYMIKVLSAPCLYIETFSFPISTINQLFKAH 282


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,327,929
Number of Sequences: 5004
Number of extensions: 50099
Number of successful extensions: 121
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 121
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)