Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30191
         (516 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g18700.1 68414.m02333 DNAJ heat shock N-terminal domain-conta...    32   0.26 
At4g29890.1 68417.m04253 choline monooxygenase, putative (CMO-li...    31   0.46 
At2g07727.1 68415.m00977 cytochrome b (MTCYB) (COB) (CYTB) conta...    31   0.61 
At1g72470.1 68414.m08380 exocyst subunit EXO70 family protein co...    30   1.1  
At5g59650.1 68418.m07479 leucine-rich repeat protein kinase, put...    28   3.2  
At2g36360.1 68415.m04462 kelch repeat-containing protein low sim...    27   7.5  
At5g55600.1 68418.m06932 agenet domain-containing protein / brom...    27   9.9  
At3g23560.1 68416.m02964 MATE efflux family protein similar to r...    27   9.9  

>At1g18700.1 68414.m02333 DNAJ heat shock N-terminal
           domain-containing protein low similarity to SP|Q9QYI8
           DnaJ homolog subfamily B member 7 Mus musculus; contains
           Pfam profile PF00226 DnaJ domain
          Length = 700

 Score = 31.9 bits (69), Expect = 0.26
 Identities = 22/70 (31%), Positives = 33/70 (47%), Gaps = 7/70 (10%)
 Frame = -2

Query: 233 KTISKGRMLVSLWYFVHS-------GPHQALGSNLYAGSVF*DARSSIVRQDATTNRKSP 75
           KT+   + L+SLW  +         GP   LG+ L AG+V+     S  +Q A TN+ SP
Sbjct: 589 KTVKATQKLLSLWNRIKDYLADPRMGPTLLLGALLSAGNVWWMRSRSSTQQPAQTNQPSP 648

Query: 74  PMMVSNCDRR 45
                N + +
Sbjct: 649 NQPADNVEEK 658


>At4g29890.1 68417.m04253 choline monooxygenase, putative (CMO-like)
           similar to Choline monooxygenase, chloroplast precursor
           (EC 1.14.15.7) from {Amaranthus tricolor} SP|Q93XE1,
           {Beta vulgaris} SP|O22553; contains Pfam Rieske [2Fe-2S]
           domain PF00355
          Length = 422

 Score = 31.1 bits (67), Expect = 0.46
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +3

Query: 66  HHGWTLPVSGSVLSNNRTSGVSKYRTS 146
           +HGWT  +SGS++   R SG+  +  S
Sbjct: 159 YHGWTYSLSGSLVKATRMSGIQNFSLS 185


>At2g07727.1 68415.m00977 cytochrome b (MTCYB) (COB) (CYTB) contains
           Pfam profile PF00033: Cytochrome b(N-terminal)/b6/petB;
           ontains Pfam profile PF00032: Cytochrome
           b(C-terminal)/b6/petD; 99% identical to  apocytochrome B
           (GI:6851014), cytochrome b (GI:402962), and Cytochrome b
           (Swiss-Prot:P42792) [Arabidopsis thaliana]
          Length = 393

 Score = 30.7 bits (66), Expect = 0.61
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = +1

Query: 28  FKNKRIRRSQFETIMGGLFRLVVASCLTIELLASQNTEPAY 150
           FK+  +R S F  I  G+F L++A CL +  +  Q  E  +
Sbjct: 314 FKSMYVRSSSFRPIHQGMFWLLLADCLLLGWIGCQPVEAPF 354


>At1g72470.1 68414.m08380 exocyst subunit EXO70 family protein
           contains Pfam domain PF03081: Exo70 exocyst complex
           subunit;
          Length = 633

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 14/41 (34%), Positives = 23/41 (56%)
 Frame = -2

Query: 140 SVF*DARSSIVRQDATTNRKSPPMMVSNCDRRIRLFLNILD 18
           S F  A   I+R DAT + ++   M+ N  + + L+LN +D
Sbjct: 21  SGFDSAEKVIIRWDATASEEAREKMIFNDPQEVNLYLNAVD 61


>At5g59650.1 68418.m07479 leucine-rich repeat protein kinase,
           putative contains leucine rich repeat (LRR) domains,
           Pfam:PF00560; contains protein kinase domain,
           Pfam:PF00069
          Length = 892

 Score = 28.3 bits (60), Expect = 3.2
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = +1

Query: 79  LFRLVVASCLTIELLASQNTEPAYKLDPNAWWGPEC 186
           L  L++ S  +  ++A +N E AYKL    W G  C
Sbjct: 362 LHLLILTSLSSTSVVAVKNIEAAYKLSRIRWQGDPC 397


>At2g36360.1 68415.m04462 kelch repeat-containing protein low
           similarity to rngB protein, Dictyostelium discoideum,
           PIR:S68824; contains Pfam profile PF01344: Kelch motif
          Length = 496

 Score = 27.1 bits (57), Expect = 7.5
 Identities = 10/36 (27%), Positives = 17/36 (47%)
 Frame = +1

Query: 148 YKLDPNAWWGPECTKYHNDTSIRPFEIVFHDKMIAD 255
           Y ++   W+ PECT   ++  + P    FH  +  D
Sbjct: 51  YDIENKLWFEPECTGSESEGQVGPTPRAFHVAITID 86


>At5g55600.1 68418.m06932 agenet domain-containing protein /
           bromo-adjacent homology (BAH) domain-containing protein
           contains Pfam profile PF01426: BAH domain and PF05641:
           Agenet domain
          Length = 663

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 11/22 (50%), Positives = 12/22 (54%)
 Frame = -1

Query: 99  RYH*PEESTHDGFKLRSSNSFI 34
           R H PE S H GFK RS    +
Sbjct: 60  RIHGPENSIHSGFKWRSRREVV 81


>At3g23560.1 68416.m02964 MATE efflux family protein similar to
           ripening regulated protein DDTFR18 [Lycopersicon
           esculentum] GI:12231296; contains Pfam profile: PF01554
           uncharacterized membrane protein family
          Length = 477

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 12/39 (30%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
 Frame = -1

Query: 507 INNGNYFLMGISLLSVLN---KMYVQSLYVGHILGVFVQ 400
           IN   ++L+G+ + +      K Y + L++G I G+F Q
Sbjct: 418 INLATFYLIGMPIAAFCGFKLKFYAKGLWIGLICGIFCQ 456


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,097,437
Number of Sequences: 28952
Number of extensions: 261312
Number of successful extensions: 603
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 596
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 603
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 937669760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)