Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30190
         (516 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    26   0.20 
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       24   1.1  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    21   5.7  
AY823258-1|AAX18443.1|  145|Apis mellifera pburs protein.              21   7.5  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   7.5  
AM420632-1|CAM06632.1|  145|Apis mellifera bursicon subunit beta...    21   7.5  
X72576-1|CAA51168.1|  144|Apis mellifera Apidaecin precursor pro...    21   10.0 
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   10.0 

>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 26.2 bits (55), Expect = 0.20
 Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
 Frame = +1

Query: 331 SPLPPRPAAQYDPAKSETYRALQEDGLPDAATELSAPVAT-KVFTAPTSKRPAPTP 495
           S  PP+PA    P  S    + + D + D AT+ +A + + +   + T   P PTP
Sbjct: 335 SDTPPKPAPPPPPPSSSGPDSAKLDKIFDIATKENAMLLSGRSQKSTTGPPPGPTP 390


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 23.8 bits (49), Expect = 1.1
 Identities = 9/26 (34%), Positives = 13/26 (50%)
 Frame = +1

Query: 424 TELSAPVATKVFTAPTSKRPAPTPKP 501
           T+   P+ T+    P+S  P P P P
Sbjct: 2   TQQKQPIITQQSQQPSSGAPGPQPSP 27


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 21.4 bits (43), Expect = 5.7
 Identities = 11/43 (25%), Positives = 22/43 (51%)
 Frame = +1

Query: 1   YTSIPTSVTMSLNPNFFPNGYQDPKHPEEEVVSNWPYRTTPLV 129
           YT+ P ++   LNPN        P   ++E++ ++  R +P +
Sbjct: 210 YTACPPTLACPLNPN------PQPLTGQQELLQDFSKRFSPAI 246


>AY823258-1|AAX18443.1|  145|Apis mellifera pburs protein.
          Length = 145

 Score = 21.0 bits (42), Expect = 7.5
 Identities = 7/16 (43%), Positives = 8/16 (50%)
 Frame = -1

Query: 60  SVREEVGVERHCYTCR 13
           SV    G  + CY CR
Sbjct: 80  SVASTTGFSKECYCCR 95


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.0 bits (42), Expect = 7.5
 Identities = 10/40 (25%), Positives = 15/40 (37%)
 Frame = +1

Query: 160  GPTESYLRHHPNPAMRAPPNHDYRDTLMKQKVLHKQFNSP 279
            GP     R H    +   P HD   T +  + +   + SP
Sbjct: 1066 GPMSEERRQHTAEGVPEQPPHDTTCTTLTSQTIRISWMSP 1105


>AM420632-1|CAM06632.1|  145|Apis mellifera bursicon subunit beta
           protein precursor protein.
          Length = 145

 Score = 21.0 bits (42), Expect = 7.5
 Identities = 7/16 (43%), Positives = 8/16 (50%)
 Frame = -1

Query: 60  SVREEVGVERHCYTCR 13
           SV    G  + CY CR
Sbjct: 80  SVASTTGFSKECYCCR 95


>X72576-1|CAA51168.1|  144|Apis mellifera Apidaecin precursor
           protein.
          Length = 144

 Score = 20.6 bits (41), Expect = 10.0
 Identities = 16/64 (25%), Positives = 24/64 (37%)
 Frame = +1

Query: 31  SLNPNFFPNGYQDPKHPEEEVVSNWPYRTTPLVLPGAKVRREPGPTESYLRHHPNPAMRA 210
           +L+P   P   +    PE E  +N P        P  ++RRE  P      + P    + 
Sbjct: 22  NLDPPTRPTRLRREAEPEAEPGNNRPVYIPQPRPPHPRLRREAEPEAEPGNNRPVYIPQP 81

Query: 211 PPNH 222
            P H
Sbjct: 82  RPPH 85


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 20.6 bits (41), Expect = 10.0
 Identities = 8/21 (38%), Positives = 11/21 (52%)
 Frame = +3

Query: 153 GAWPHRELPASSPQPSNEGTS 215
           G  PH + P  SPQ  +  +S
Sbjct: 433 GKLPHDDQPPLSPQSDSSSSS 453


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.310    0.128    0.385 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 129,870
Number of Sequences: 438
Number of extensions: 2948
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14354847
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.3 bits)