Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV30187
(314 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC959.08 |rpl2102|rpl21-2, rpl21|60S ribosomal protein L21|Sch... 101 3e-23
SPBC365.03c |rpl2101|rpl21, rpl21-1|60S ribosomal protein L21|Sc... 101 3e-23
SPAC7D4.12c |||DUF1212 family protein|Schizosaccharomyces pombe|... 26 1.5
SPAC17A2.04c |||HSP chaperone complex subunit |Schizosaccharomyc... 25 2.7
SPAC17G6.13 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 25 2.7
SPAC5D6.02c |mug165||sequence orphan|Schizosaccharomyces pombe|c... 25 2.7
SPCC191.05c |||nucleoside 2-deoxyribosyltransferase |Schizosacch... 25 3.6
SPAC328.04 |||AAA family ATPase, unknown biological role|Schizos... 25 3.6
SPBC1773.01 |||striatin homolog|Schizosaccharomyces pombe|chr 2|... 25 3.6
SPBP35G2.13c |swc2||chromatin remodeling complex subunit Swc2 |S... 25 3.6
SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces ... 25 3.6
SPAC25G10.04c |rec10|rec20|meiotic recombination protein Rec10 |... 24 6.3
SPAC186.09 |||pyruvate decarboxylase |Schizosaccharomyces pombe|... 24 6.3
SPCP25A2.02c |rhp26||SNF2 family helicase Rhp26|Schizosaccharomy... 24 6.3
SPAPB24D3.09c |pdr1||ABC transporter Pdr1|Schizosaccharomyces po... 24 6.3
>SPAC959.08 |rpl2102|rpl21-2, rpl21|60S ribosomal protein
L21|Schizosaccharomyces pombe|chr 1|||Manual
Length = 160
Score = 101 bits (242), Expect = 3e-23
Identities = 47/71 (66%), Positives = 54/71 (76%), Gaps = 1/71 (1%)
Frame = +3
Query: 6 KRINIRVEHVKHSKCRQDFLKRVKENERLLKEAKAAGKTVNLKRQPAPPKAAHIVS-GTE 182
KR+N+R+EHVKHSKCRQDFL RVK NE KEAKA GKTV L+RQPAPP AH VS
Sbjct: 87 KRVNVRIEHVKHSKCRQDFLDRVKANEAKRKEAKAQGKTVQLRRQPAPPATAHFVSTENN 146
Query: 183 KPVLLAPIPYE 215
+PV L P+ Y+
Sbjct: 147 EPVTLHPVAYD 157
>SPBC365.03c |rpl2101|rpl21, rpl21-1|60S ribosomal protein
L21|Schizosaccharomyces pombe|chr 2|||Manual
Length = 160
Score = 101 bits (241), Expect = 3e-23
Identities = 47/71 (66%), Positives = 54/71 (76%), Gaps = 1/71 (1%)
Frame = +3
Query: 6 KRINIRVEHVKHSKCRQDFLKRVKENERLLKEAKAAGKTVNLKRQPAPPKAAHIVS-GTE 182
KR+N+R+EHVKHSKCRQDFL RVK NE KEAKA GKTV L+RQPAPP AH VS
Sbjct: 87 KRVNVRIEHVKHSKCRQDFLDRVKANEAKRKEAKAQGKTVQLRRQPAPPAKAHFVSTENN 146
Query: 183 KPVLLAPIPYE 215
+PV L P+ Y+
Sbjct: 147 EPVTLHPVAYD 157
>SPAC7D4.12c |||DUF1212 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 759
Score = 25.8 bits (54), Expect = 1.5
Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Frame = -1
Query: 188 GFLSSTDDVGSFRGSWLSLQVDGLAGSL-GFLQ 93
GF S+T SF+G W+ L + + G L G LQ
Sbjct: 445 GFASATILPMSFQGGWIDLPIAFILGCLVGILQ 477
>SPAC17A2.04c |||HSP chaperone complex subunit |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 358
Score = 25.0 bits (52), Expect = 2.7
Identities = 14/32 (43%), Positives = 17/32 (53%)
Frame = +3
Query: 45 KCRQDFLKRVKENERLLKEAKAAGKTVNLKRQ 140
K DF KR E +R+ +E A KTV L Q
Sbjct: 181 KKSDDFEKRESEKKRVAQEKVIAAKTVLLALQ 212
>SPAC17G6.13 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 433
Score = 25.0 bits (52), Expect = 2.7
Identities = 10/27 (37%), Positives = 15/27 (55%)
Frame = +3
Query: 99 EAKAAGKTVNLKRQPAPPKAAHIVSGT 179
+ KA K + +QP+PP A H + T
Sbjct: 344 DTKAGEKLTDSSKQPSPPVAEHFSNET 370
>SPAC5D6.02c |mug165||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 300
Score = 25.0 bits (52), Expect = 2.7
Identities = 17/61 (27%), Positives = 30/61 (49%)
Frame = +1
Query: 7 SASISVLSMSSTPSADKTSLRESKRMRGY*RKPRLPARPST*RDSQLPLKLPTSSVELRN 186
SAS S S++S+ S D ++ +R R RKP + +P+ + + P + T +
Sbjct: 56 SASRSPESIASSQSNDSAAIPSYRRKRRKVRKPEI-VKPTLRKRGRKPKNISTLEHDKSK 114
Query: 187 P 189
P
Sbjct: 115 P 115
>SPCC191.05c |||nucleoside 2-deoxyribosyltransferase
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 211
Score = 24.6 bits (51), Expect = 3.6
Identities = 13/27 (48%), Positives = 15/27 (55%)
Frame = -1
Query: 119 LAGSLGFLQ*PLILFDSLKEVLSALGV 39
LAG L F + LFD LKE+ GV
Sbjct: 22 LAGDLVFRPNAIELFDELKEICKDAGV 48
>SPAC328.04 |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 1|||Manual
Length = 741
Score = 24.6 bits (51), Expect = 3.6
Identities = 10/15 (66%), Positives = 14/15 (93%)
Frame = +1
Query: 28 SMSSTPSADKTSLRE 72
SMSS+P+A +TSLR+
Sbjct: 163 SMSSSPTASRTSLRK 177
>SPBC1773.01 |||striatin homolog|Schizosaccharomyces pombe|chr
2|||Manual
Length = 612
Score = 24.6 bits (51), Expect = 3.6
Identities = 15/44 (34%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
Frame = +3
Query: 66 KRVKENERLLK-EAKAAGKTVNLKRQPAPPKAAHIVSGTEKPVL 194
K+ KE + LK E+ T + QP P SGTE V+
Sbjct: 269 KKKKEQKWTLKFESDKGTSTQCITHQPLPGSTPSFASGTENGVI 312
>SPBP35G2.13c |swc2||chromatin remodeling complex subunit Swc2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 316
Score = 24.6 bits (51), Expect = 3.6
Identities = 12/41 (29%), Positives = 20/41 (48%)
Frame = +3
Query: 66 KRVKENERLLKEAKAAGKTVNLKRQPAPPKAAHIVSGTEKP 188
K +++ ER+ K + NL+R PPK + +E P
Sbjct: 83 KILRDEERIKKRKIQKNRAANLQRTLQPPKRPTPSAASEVP 123
>SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1427
Score = 24.6 bits (51), Expect = 3.6
Identities = 7/15 (46%), Positives = 13/15 (86%)
Frame = -1
Query: 143 WLSLQVDGLAGSLGF 99
WL+++ DG++G +GF
Sbjct: 1085 WLAIRTDGISGLVGF 1099
>SPAC25G10.04c |rec10|rec20|meiotic recombination protein Rec10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 791
Score = 23.8 bits (49), Expect = 6.3
Identities = 18/52 (34%), Positives = 23/52 (44%)
Frame = +3
Query: 51 RQDFLKRVKENERLLKEAKAAGKTVNLKRQPAPPKAAHIVSGTEKPVLLAPI 206
+Q LK EN+ + K A VNL+ P P I T KP +A I
Sbjct: 500 KQKSLKPDTENQESSVKNKKAKSNVNLQYSPKTP-ICKINDETLKPPTIANI 550
>SPAC186.09 |||pyruvate decarboxylase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 572
Score = 23.8 bits (49), Expect = 6.3
Identities = 12/21 (57%), Positives = 15/21 (71%)
Frame = +3
Query: 138 QPAPPKAAHIVSGTEKPVLLA 200
Q A +A IV+G +KPVLLA
Sbjct: 207 QMAVDISAKIVNGKQKPVLLA 227
>SPCP25A2.02c |rhp26||SNF2 family helicase Rhp26|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 973
Score = 23.8 bits (49), Expect = 6.3
Identities = 15/39 (38%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
Frame = +3
Query: 75 KENERLLKEA-KAAGKTVNLKRQPAPPKAAHIVSGTEKP 188
KE R+ EA +A RQ PP+ + V GT KP
Sbjct: 918 KEATRVANEALRAVSSFRRPPRQLIPPQQSTNVPGTSKP 956
>SPAPB24D3.09c |pdr1||ABC transporter Pdr1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1396
Score = 23.8 bits (49), Expect = 6.3
Identities = 10/29 (34%), Positives = 17/29 (58%)
Frame = +3
Query: 36 KHSKCRQDFLKRVKENERLLKEAKAAGKT 122
K++KC F ++V+E +L E G+T
Sbjct: 17 KNTKCPDKFEQKVEEYLEVLNELHLTGRT 45
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,183,764
Number of Sequences: 5004
Number of extensions: 19994
Number of successful extensions: 69
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 68
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 69
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 83936266
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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