Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30187
         (314 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_31082| Best HMM Match : Motilin_ghrelin (HMM E-Value=0.23)          31   0.26 
SB_1824| Best HMM Match : Cupin_3 (HMM E-Value=1.6)                    29   0.60 
SB_55854| Best HMM Match : NinE (HMM E-Value=2.1)                      29   0.60 
SB_52319| Best HMM Match : Rho_N (HMM E-Value=1.8e-07)                 28   1.4  
SB_51340| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   1.4  
SB_18296| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   2.4  
SB_19774| Best HMM Match : WWE (HMM E-Value=5.4e-24)                   27   4.2  
SB_47787| Best HMM Match : DUF1556 (HMM E-Value=3.4)                   26   5.6  
SB_39733| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   5.6  
SB_24590| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   5.6  
SB_23489| Best HMM Match : DUF1393 (HMM E-Value=0.56)                  26   5.6  
SB_42848| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   7.4  
SB_41191| Best HMM Match : PadR (HMM E-Value=8.6)                      26   7.4  
SB_1005| Best HMM Match : GPP34 (HMM E-Value=0.16)                     26   7.4  
SB_26400| Best HMM Match : RVT_1 (HMM E-Value=1.1e-30)                 26   7.4  
SB_9429| Best HMM Match : Pili_assembly_N (HMM E-Value=5.8)            26   7.4  
SB_29019| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   9.8  
SB_36012| Best HMM Match : DUF755 (HMM E-Value=0.064)                  25   9.8  
SB_4617| Best HMM Match : Extensin_2 (HMM E-Value=0.38)                25   9.8  

>SB_31082| Best HMM Match : Motilin_ghrelin (HMM E-Value=0.23)
          Length = 565

 Score = 30.7 bits (66), Expect = 0.26
 Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
 Frame = +3

Query: 60  FLKRVKENERLLKEAKAAGKTVNLKRQPA-PPKAAHIVSGTEKPVLLAPIP 209
           F+KR +  +R L+E   A   +NL ++PA P K    +   EKPV   P P
Sbjct: 272 FVKRTQRRQRELEEVADA---INLAKRPAQPEKPLKFLVKVEKPVPRPPTP 319


>SB_1824| Best HMM Match : Cupin_3 (HMM E-Value=1.6)
          Length = 305

 Score = 29.5 bits (63), Expect = 0.60
 Identities = 10/31 (32%), Positives = 19/31 (61%)
 Frame = +3

Query: 123 VNLKRQPAPPKAAHIVSGTEKPVLLAPIPYE 215
           VN  +   PP A + ++  ++PVL  P+P++
Sbjct: 130 VNKSKAETPPPAYYTITSNQEPVLNMPVPWQ 160


>SB_55854| Best HMM Match : NinE (HMM E-Value=2.1)
          Length = 271

 Score = 29.5 bits (63), Expect = 0.60
 Identities = 13/40 (32%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
 Frame = +3

Query: 6   KRINIRVEH-VKHSKCRQDFLKRVKENERLLKEAKAAGKT 122
           +RI   ++H ++  K +QDF+  +KE  RL +E+++   T
Sbjct: 39  ERIQSCIDHKLEERKIKQDFVTLIKERNRLGRESRSGAST 78


>SB_52319| Best HMM Match : Rho_N (HMM E-Value=1.8e-07)
          Length = 1458

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 18/60 (30%), Positives = 29/60 (48%)
 Frame = +3

Query: 6   KRINIRVEHVKHSKCRQDFLKRVKENERLLKEAKAAGKTVNLKRQPAPPKAAHIVSGTEK 185
           K I +  EH + S C Q F +    N  + ++  + GKT  + +     K  HI+S +EK
Sbjct: 413 KNIELLTEHWECSGCEQRFNRHDNYNRHVTEKRCSGGKTQLICK---GEKFKHIMSSSEK 469


>SB_51340| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4529

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 15/71 (21%), Positives = 35/71 (49%)
 Frame = +3

Query: 6    KRINIRVEHVKHSKCRQDFLKRVKENERLLKEAKAAGKTVNLKRQPAPPKAAHIVSGTEK 185
            +++ +        K R + ++   + +RLL+++++  K   L++ P P  A  + +  E 
Sbjct: 1536 RKLTVEQREPYRLKARDNRVRLKDQEKRLLRQSESEKKHAALEQPPTP--APQVETQPET 1593

Query: 186  PVLLAPIPYEF 218
            P+  A  P+ F
Sbjct: 1594 PIHQAASPFVF 1604


>SB_18296| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 865

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 15/45 (33%), Positives = 24/45 (53%)
 Frame = +1

Query: 28  SMSSTPSADKTSLRESKRMRGY*RKPRLPARPST*RDSQLPLKLP 162
           ++S+ PS  KT+   ++R     RKP +PAR ST       ++ P
Sbjct: 633 TLSAPPSRPKTAPTSAQRTPEPIRKPLVPARMSTDSTDAFKIQAP 677


>SB_19774| Best HMM Match : WWE (HMM E-Value=5.4e-24)
          Length = 729

 Score = 26.6 bits (56), Expect = 4.2
 Identities = 12/55 (21%), Positives = 27/55 (49%)
 Frame = +3

Query: 24  VEHVKHSKCRQDFLKRVKENERLLKEAKAAGKTVNLKRQPAPPKAAHIVSGTEKP 188
           V H  ++     F+    ++++   +A+  G+ ++L  +P     AH++   EKP
Sbjct: 286 VMHKANALASGSFMATTPQSKQTKSKAQDGGRGLSLAGEPYSSHQAHLIQVFEKP 340


>SB_47787| Best HMM Match : DUF1556 (HMM E-Value=3.4)
          Length = 382

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 17/43 (39%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
 Frame = +1

Query: 1   YRSASISVLSMSSTPSADKTSL-RESKRMRGY*RKPRLPARPS 126
           YR +S    S  S+PS+D TS  R+SK +  Y    R P   S
Sbjct: 234 YRKSSFDASSPESSPSSDSTSSNRKSKFILDYNDNKRDPITAS 276


>SB_39733| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2839

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
 Frame = +3

Query: 114  GKTVNLKRQPAPPKAAHIVSGTEK--PVLLAPIPYEFVA*SPIKY 242
            G T+    + AP K   + S   K  PV  AP+ Y  V  +P+KY
Sbjct: 928  GATIEHALESAPVKYTPVESAPVKYTPVESAPVKYTPVESAPVKY 972


>SB_24590| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 246

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 14/37 (37%), Positives = 17/37 (45%)
 Frame = +3

Query: 15  NIRVEHVKHSKCRQDFLKRVKENERLLKEAKAAGKTV 125
           N    H  HS CRQ+   + K  E + K AK    TV
Sbjct: 144 NALSHHSNHSFCRQEQHIQKKNTEEIEKAAKNQSNTV 180


>SB_23489| Best HMM Match : DUF1393 (HMM E-Value=0.56)
          Length = 223

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 15/53 (28%), Positives = 28/53 (52%)
 Frame = +3

Query: 57  DFLKRVKENERLLKEAKAAGKTVNLKRQPAPPKAAHIVSGTEKPVLLAPIPYE 215
           D  +R K+    LK+ + A ++VN  R P+P +  ++ +  +   L AP+  E
Sbjct: 167 DAAERQKKRRERLKQWRKA-RSVNRDRGPSPGRRKNVAAFDQDDYLEAPMDVE 218


>SB_42848| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 231

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = +3

Query: 90  LLKEAKAAGKTVNLKRQPAPPK 155
           ++++ K  G TVNL RQ  PPK
Sbjct: 41  IIQKWKEYGTTVNLPRQGRPPK 62


>SB_41191| Best HMM Match : PadR (HMM E-Value=8.6)
          Length = 276

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 10/32 (31%), Positives = 17/32 (53%)
 Frame = +2

Query: 194 TCAYPIRIRSVKSNKIFLRTKKKKKNSRGGPV 289
           +C++P    S KS  I   TK+ + N+   P+
Sbjct: 38  SCSFPENATSTKSKLIHSNTKRDRNNNLSAPM 69


>SB_1005| Best HMM Match : GPP34 (HMM E-Value=0.16)
          Length = 265

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = +3

Query: 21  RVEHVKHSKCRQDFLKRVKENERLLKEAKAA 113
           R   ++H+   QD+ +  K  ERLLKE K A
Sbjct: 226 RAPILEHNFSDQDYNRAKKNIERLLKEGKPA 256


>SB_26400| Best HMM Match : RVT_1 (HMM E-Value=1.1e-30)
          Length = 1084

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = -2

Query: 226 YATNSYGIGASKTGFSVPLTMW 161
           YA +SY IGA+ T  SV L+ W
Sbjct: 286 YAGHSYRIGAAITAASVGLSPW 307


>SB_9429| Best HMM Match : Pili_assembly_N (HMM E-Value=5.8)
          Length = 125

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 14/37 (37%), Positives = 23/37 (62%), Gaps = 3/37 (8%)
 Frame = +1

Query: 97  RKPRLPARPS---T*RDSQLPLKLPTSSVELRNPSYL 198
           ++ RLP +     T ++S LPL++   SV+LR  +YL
Sbjct: 85  KESRLPPQVQIKRTEKESDLPLQVQIKSVQLRRVTYL 121


>SB_29019| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 646

 Score = 25.4 bits (53), Expect = 9.8
 Identities = 14/45 (31%), Positives = 24/45 (53%)
 Frame = +3

Query: 27  EHVKHSKCRQDFLKRVKENERLLKEAKAAGKTVNLKRQPAPPKAA 161
           EH++ + C  D  ++ +E   +L E +   KT+N K +  PP  A
Sbjct: 268 EHLE-TGCVADLQQKYEECFEILMENQQEMKTINKKIETQPPTPA 311


>SB_36012| Best HMM Match : DUF755 (HMM E-Value=0.064)
          Length = 265

 Score = 25.4 bits (53), Expect = 9.8
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +2

Query: 248 RTKKKKKNSRGGPVPNSPYSE 310
           + KKKKK  RGGP  ++  SE
Sbjct: 72  KDKKKKKEKRGGPSRHNNASE 92


>SB_4617| Best HMM Match : Extensin_2 (HMM E-Value=0.38)
          Length = 450

 Score = 25.4 bits (53), Expect = 9.8
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = +3

Query: 138 QPAPPKAAHIVSGTEKPVLLAPIPYEFVA*SP 233
           QP  P    I   +  P +++P P +F+A SP
Sbjct: 198 QPVAPSPVCIPVQSPAPNMMSPSPQQFIAQSP 229


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,217,005
Number of Sequences: 59808
Number of extensions: 160133
Number of successful extensions: 560
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 515
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 555
length of database: 16,821,457
effective HSP length: 72
effective length of database: 12,515,281
effective search space used: 400488992
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)