Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30187
         (314 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L15188-7|AAA27951.1|  161|Caenorhabditis elegans Ribosomal prote...    85   1e-17
U00047-4|AAA50690.1|  825|Caenorhabditis elegans Hypothetical pr...    29   0.53 
AL132853-5|CAB60443.1|  279|Caenorhabditis elegans Hypothetical ...    29   0.70 
Z46267-9|CAA86427.2|  889|Caenorhabditis elegans Hypothetical pr...    29   0.93 
Z78016-1|CAB01439.1|  276|Caenorhabditis elegans Hypothetical pr...    28   1.2  
Z92775-2|CAB07162.2|  382|Caenorhabditis elegans Hypothetical pr...    27   2.1  
Z92775-1|CAB07161.2|  379|Caenorhabditis elegans Hypothetical pr...    27   2.1  
AL110490-7|CAD59175.1|  533|Caenorhabditis elegans Hypothetical ...    27   3.8  
AL110490-6|CAB54442.2|  687|Caenorhabditis elegans Hypothetical ...    27   3.8  
Z68270-11|CAJ90499.1|  394|Caenorhabditis elegans Hypothetical p...    26   5.0  
Z92815-4|CAB07294.2| 2175|Caenorhabditis elegans Hypothetical pr...    25   8.7  
U80439-9|AAO38675.1|  661|Caenorhabditis elegans Hypothetical pr...    25   8.7  
U80439-8|AAB37646.3| 1724|Caenorhabditis elegans Hypothetical pr...    25   8.7  

>L15188-7|AAA27951.1|  161|Caenorhabditis elegans Ribosomal protein,
           large subunitprotein 21 protein.
          Length = 161

 Score = 84.6 bits (200), Expect = 1e-17
 Identities = 42/76 (55%), Positives = 53/76 (69%), Gaps = 2/76 (2%)
 Frame = +3

Query: 3   PKRINIRVEHVKHSKCRQDFLKRVKENERLLKEAKAAGKTV-NLKRQPAPPKAAH-IVSG 176
           PKRINIR+EH+K SKCR DFL RVK N+   K AK+AG+ V  LKR P  P+ AH + + 
Sbjct: 86  PKRINIRIEHIKPSKCRTDFLNRVKSNDEKRKAAKSAGQPVPALKRLPVAPRGAHTVTTQ 145

Query: 177 TEKPVLLAPIPYEFVA 224
             +P LLAP+ +E VA
Sbjct: 146 NNEPELLAPLRFEIVA 161


>U00047-4|AAA50690.1|  825|Caenorhabditis elegans Hypothetical
           protein ZK418.6 protein.
          Length = 825

 Score = 29.5 bits (63), Expect = 0.53
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = +3

Query: 126 NLKRQPAPPKAAHIVSGTE 182
           NL+R+PAPPK  H+ S  E
Sbjct: 462 NLRRRPAPPKQNHVASPAE 480


>AL132853-5|CAB60443.1|  279|Caenorhabditis elegans Hypothetical
           protein Y80D3A.9 protein.
          Length = 279

 Score = 29.1 bits (62), Expect = 0.70
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = -1

Query: 191 DGFLSSTDDVGSFRGSWLSLQVDGLAGSL 105
           DG LS  D+    RG+WL +   G  G L
Sbjct: 39  DGMLSGVDEKDVARGTWLGMDAHGKVGML 67


>Z46267-9|CAA86427.2|  889|Caenorhabditis elegans Hypothetical
           protein F49E2.5d protein.
          Length = 889

 Score = 28.7 bits (61), Expect = 0.93
 Identities = 18/62 (29%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
 Frame = +3

Query: 24  VEHVKHSKCRQDFLKRVKENERLLKEAKAAGKTVN-LKRQPAPPKAAHIVSGTEKPVLLA 200
           VE+V          +  K+N++  K++++   T   ++  PAPP+   +V   EKPV  A
Sbjct: 361 VENVVEKSTTPPATENKKKNKKDKKKSESEKVTEQPVESAPAPPQVEQVVEKVEKPV--A 418

Query: 201 PI 206
           P+
Sbjct: 419 PV 420


>Z78016-1|CAB01439.1|  276|Caenorhabditis elegans Hypothetical
           protein R186.1 protein.
          Length = 276

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = -1

Query: 191 DGFLSSTDDVGSFRGSWLSLQVDGLAGSL 105
           DG LS  D   + RG+WL L  +G  G +
Sbjct: 39  DGILSGVDKQENARGTWLGLNENGRIGMM 67


>Z92775-2|CAB07162.2|  382|Caenorhabditis elegans Hypothetical
           protein C06H5.2 protein.
          Length = 382

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 12/17 (70%), Positives = 15/17 (88%)
 Frame = -1

Query: 86  LILFDSLKEVLSALGVL 36
           LILFD+LK VL ++GVL
Sbjct: 200 LILFDALKNVLQSVGVL 216


>Z92775-1|CAB07161.2|  379|Caenorhabditis elegans Hypothetical
           protein C06H5.1 protein.
          Length = 379

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 12/17 (70%), Positives = 15/17 (88%)
 Frame = -1

Query: 86  LILFDSLKEVLSALGVL 36
           LILFD+LK VL ++GVL
Sbjct: 200 LILFDALKNVLQSVGVL 216


>AL110490-7|CAD59175.1|  533|Caenorhabditis elegans Hypothetical
           protein Y48B6A.6b protein.
          Length = 533

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 15/65 (23%), Positives = 27/65 (41%)
 Frame = +3

Query: 21  RVEHVKHSKCRQDFLKRVKENERLLKEAKAAGKTVNLKRQPAPPKAAHIVSGTEKPVLLA 200
           R+  V+  +  ++  +R KE+E      +   + + + R P PP    I       + L 
Sbjct: 214 RITSVRSDESIEEEERRRKESEETASFEELEAEIMRISRSPVPPPVLSIPPPPPPNIPLP 273

Query: 201 PIPYE 215
            IP E
Sbjct: 274 TIPQE 278


>AL110490-6|CAB54442.2|  687|Caenorhabditis elegans Hypothetical
           protein Y48B6A.6a protein.
          Length = 687

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 15/65 (23%), Positives = 27/65 (41%)
 Frame = +3

Query: 21  RVEHVKHSKCRQDFLKRVKENERLLKEAKAAGKTVNLKRQPAPPKAAHIVSGTEKPVLLA 200
           R+  V+  +  ++  +R KE+E      +   + + + R P PP    I       + L 
Sbjct: 214 RITSVRSDESIEEEERRRKESEETASFEELEAEIMRISRSPVPPPVLSIPPPPPPNIPLP 273

Query: 201 PIPYE 215
            IP E
Sbjct: 274 TIPQE 278


>Z68270-11|CAJ90499.1|  394|Caenorhabditis elegans Hypothetical
           protein ZC410.1b protein.
          Length = 394

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 13/35 (37%), Positives = 16/35 (45%)
 Frame = +2

Query: 197 CAYPIRIRSVKSNKIFLRTKKKKKNSRGGPVPNSP 301
           C   I +RS + N    R K  + NS   P  NSP
Sbjct: 8   CISTIIVRSKRENFACTRRKDSRNNSDAAPNSNSP 42


>Z92815-4|CAB07294.2| 2175|Caenorhabditis elegans Hypothetical protein
            W01F3.3 protein.
          Length = 2175

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +1

Query: 103  PRLPARPST*RDSQLPLKLPTSSVELRNPS 192
            P++P  P     SQ+PL  PT+ +E   P+
Sbjct: 1365 PKVPQLPIGAPGSQVPLPTPTTVIEKTTPT 1394


>U80439-9|AAO38675.1|  661|Caenorhabditis elegans Hypothetical
           protein C01G8.9b protein.
          Length = 661

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = +3

Query: 87  RLLKEAKAAGKTVNLKRQPAPPKAAHIVSGTEK 185
           RL ++  AA       R P P K AH+ +G +K
Sbjct: 603 RLSQKRSAAALIDEQSRSPPPAKRAHLSNGFDK 635


>U80439-8|AAB37646.3| 1724|Caenorhabditis elegans Hypothetical protein
            C01G8.9a protein.
          Length = 1724

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = +3

Query: 87   RLLKEAKAAGKTVNLKRQPAPPKAAHIVSGTEK 185
            RL ++  AA       R P P K AH+ +G +K
Sbjct: 1666 RLSQKRSAAALIDEQSRSPPPAKRAHLSNGFDK 1698


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,658,638
Number of Sequences: 27780
Number of extensions: 113184
Number of successful extensions: 451
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 426
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 450
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 355337994
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)