Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV30187
(314 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g57860.1 68414.m06565 60S ribosomal protein L21 similar to 60... 71 2e-13
At1g57660.1 68414.m06543 60S ribosomal protein L21 (RPL21E) simi... 71 2e-13
At1g09690.1 68414.m01088 60S ribosomal protein L21 (RPL21C) Simi... 70 4e-13
At1g09590.1 68414.m01076 60S ribosomal protein L21 (RPL21A) Simi... 70 4e-13
At2g43900.1 68415.m05457 endonuclease/exonuclease/phosphatase fa... 28 1.1
At2g13150.1 68415.m01450 expressed protein contains a bZIP trans... 28 1.1
At4g31490.1 68417.m04473 coatomer beta subunit, putative / beta-... 27 2.0
At5g63320.1 68418.m07946 expressed protein 27 3.5
At3g52020.1 68416.m05706 serine carboxypeptidase S10 family prot... 27 3.5
At1g75680.1 68414.m08792 glycosyl hydrolase family 9 protein sim... 27 3.5
At4g33560.1 68417.m04769 expressed protein 26 4.6
At3g17180.1 68416.m02191 serine carboxypeptidase S10 family prot... 26 4.6
At2g37080.1 68415.m04550 myosin heavy chain-related low similari... 26 4.6
At2g12940.1 68415.m01419 expressed protein 26 4.6
At2g42530.1 68415.m05263 cold-responsive protein / cold-regulate... 25 8.1
At1g43780.1 68414.m05043 serine carboxypeptidase S10 family prot... 25 8.1
>At1g57860.1 68414.m06565 60S ribosomal protein L21 similar to 60S
ribosomal protein L21 GI:3885884 from [Oryza sativa]
Length = 164
Score = 70.5 bits (165), Expect = 2e-13
Identities = 33/72 (45%), Positives = 48/72 (66%)
Frame = +3
Query: 6 KRINIRVEHVKHSKCRQDFLKRVKENERLLKEAKAAGKTVNLKRQPAPPKAAHIVSGTEK 185
KRI++RVEHV+ S+C ++F R K+N+ L +AKA G+T++ KRQP PK +V G
Sbjct: 87 KRIHVRVEHVQQSRCAEEFKLRKKQNDVLKADAKARGETISTKRQPKGPKPGFMVEGMTL 146
Query: 186 PVLLAPIPYEFV 221
+ PIPY+ V
Sbjct: 147 ET-VTPIPYDVV 157
>At1g57660.1 68414.m06543 60S ribosomal protein L21 (RPL21E) similar
to 60S ribosomal protein L21 GB:Q43291 GI:2851508 from
[Arabidopsis thaliana]
Length = 164
Score = 70.5 bits (165), Expect = 2e-13
Identities = 33/72 (45%), Positives = 48/72 (66%)
Frame = +3
Query: 6 KRINIRVEHVKHSKCRQDFLKRVKENERLLKEAKAAGKTVNLKRQPAPPKAAHIVSGTEK 185
KRI++RVEHV+ S+C ++F R K+N+ L +AKA G+T++ KRQP PK +V G
Sbjct: 87 KRIHVRVEHVQQSRCAEEFKLRKKQNDVLKADAKARGETISTKRQPKGPKPGFMVEGMTL 146
Query: 186 PVLLAPIPYEFV 221
+ PIPY+ V
Sbjct: 147 ET-VTPIPYDVV 157
>At1g09690.1 68414.m01088 60S ribosomal protein L21 (RPL21C) Similar
to ribosomal protein L21 (gb|L38826). ESTs
gb|AA395597,gb|ATTS5197 come from this gene
Length = 164
Score = 69.7 bits (163), Expect = 4e-13
Identities = 33/72 (45%), Positives = 47/72 (65%)
Frame = +3
Query: 6 KRINIRVEHVKHSKCRQDFLKRVKENERLLKEAKAAGKTVNLKRQPAPPKAAHIVSGTEK 185
KRI++RVEHV+ S+C ++F R K+N+ L AKA G+T++ KRQP PK +V G
Sbjct: 87 KRIHVRVEHVQQSRCAEEFKLRKKKNDELKAAAKANGETISTKRQPKGPKPGFMVEGMTL 146
Query: 186 PVLLAPIPYEFV 221
+ PIPY+ V
Sbjct: 147 ET-VTPIPYDVV 157
>At1g09590.1 68414.m01076 60S ribosomal protein L21 (RPL21A) Similar
to L21 family of ribosomal protein; amino acid sequence
is identical to F21M12.8
Length = 164
Score = 69.7 bits (163), Expect = 4e-13
Identities = 33/72 (45%), Positives = 47/72 (65%)
Frame = +3
Query: 6 KRINIRVEHVKHSKCRQDFLKRVKENERLLKEAKAAGKTVNLKRQPAPPKAAHIVSGTEK 185
KRI++RVEHV+ S+C ++F R K+N+ L AKA G+T++ KRQP PK +V G
Sbjct: 87 KRIHVRVEHVQQSRCAEEFKLRKKKNDELKAAAKANGETISTKRQPKGPKPGFMVEGMTL 146
Query: 186 PVLLAPIPYEFV 221
+ PIPY+ V
Sbjct: 147 ET-VTPIPYDVV 157
>At2g43900.1 68415.m05457 endonuclease/exonuclease/phosphatase family
protein belongs to Pfam:PF03372:
Endonuclease/Exonuclease/phosphatase family; contains 3
WD-40 repeats (PF00400);similar to Type II
inositol-1,4,5-trisphosphate 5-phosphatase EC 3.1.3.56
(5PTASE) (INPP5B) (SP:P32019) [Homo sapiens]
Length = 1305
Score = 28.3 bits (60), Expect = 1.1
Identities = 10/28 (35%), Positives = 20/28 (71%)
Frame = +3
Query: 9 RINIRVEHVKHSKCRQDFLKRVKENERL 92
+ ++++EHV S RQ+F + +K NE++
Sbjct: 920 KFHVKIEHVDRSVRRQEFGRIIKTNEKV 947
>At2g13150.1 68415.m01450 expressed protein contains a bZIP
transcription factor basic domain signature (PDOC00036)
Length = 262
Score = 28.3 bits (60), Expect = 1.1
Identities = 19/55 (34%), Positives = 29/55 (52%)
Frame = +1
Query: 28 SMSSTPSADKTSLRESKRMRGY*RKPRLPARPST*RDSQLPLKLPTSSVELRNPS 192
S +STPS ++ + S P L PS+ R + +PL P++SVE R+ S
Sbjct: 4 SDNSTPSRPRSITQPSLAFSSL---PPLSPSPSSSRRNSIPLMNPSASVESRDSS 55
>At4g31490.1 68417.m04473 coatomer beta subunit, putative /
beta-coat protein, putative / beta-COP, putative similar
to Coatomer beta subunit (Beta-coat protein) (Beta-COP)
from {Rattus norvegicus} SP|P23514, {Mus musculus}
SP|Q9JIF7, {Homo sapiens} SP|P53618; contains Pfam
profile: PF01602 Adaptin N terminal region
Length = 948
Score = 27.5 bits (58), Expect = 2.0
Identities = 12/39 (30%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Frame = +3
Query: 15 NIRVEHVKHSKCRQDFLKRVKENE-RLLKEAKAAGKTVN 128
N+ ++ + CRQ F+K + E + R ++E KA +T +
Sbjct: 628 NVEMKKIWLESCRQSFVKMISEKQLREMEELKAKTQTTH 666
>At5g63320.1 68418.m07946 expressed protein
Length = 569
Score = 26.6 bits (56), Expect = 3.5
Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Frame = +3
Query: 51 RQDFLKRVKEN-ERLLKEAKAAGKTVNLKRQPAPPKA 158
R++F KR++E ERL EAKAA + + A KA
Sbjct: 103 REEFEKRLREEKERLQAEAKAAEEARRKAKAEAAEKA 139
>At3g52020.1 68416.m05706 serine carboxypeptidase S10 family protein
similar to SP|P52711 Serine carboxypeptidase II-3
precursor (EC 3.4.16.6) Hordeum vulgare; contains Pfam
profile PF0450 serine carboxypeptidase
Length = 501
Score = 26.6 bits (56), Expect = 3.5
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = -2
Query: 211 YGIGASKTGFSVPLTMWAALGGAGC 137
Y + A+KT S+PL +W GG GC
Sbjct: 111 YFVEATKTKKSLPLVLWLN-GGPGC 134
>At1g75680.1 68414.m08792 glycosyl hydrolase family 9 protein
similar to endo-beta-1,4-glucanase GB:AAC12685
GI:3025470 from [Pinus radiata]
Length = 525
Score = 26.6 bits (56), Expect = 3.5
Identities = 11/19 (57%), Positives = 12/19 (63%)
Frame = +2
Query: 245 LRTKKKKKNSRGGPVPNSP 301
LRTKK + GGPVP P
Sbjct: 33 LRTKKSGDDDGGGPVPGPP 51
>At4g33560.1 68417.m04769 expressed protein
Length = 95
Score = 26.2 bits (55), Expect = 4.6
Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
Frame = +3
Query: 87 RLL-KEAKAAGKTVNLKRQPAPP-KAAHIVSGTEKPVLLAPIPYEF 218
RLL KEA A +T+ + +P+PP ++ S KP+ P F
Sbjct: 34 RLLHKEAMARVRTITVPSRPSPPTSSSSATSIRSKPLSTTPFETSF 79
>At3g17180.1 68416.m02191 serine carboxypeptidase S10 family protein
similar to serine carboxypeptidase II SP:P08819
[Triticum aestivum] (Carlsberg Res. Commun.
52:297-311(1987))
Length = 478
Score = 26.2 bits (55), Expect = 4.6
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = +3
Query: 99 EAKAAGKTVNLKRQPAPPKAAH 164
EA+ + K VNL QP PK +H
Sbjct: 32 EAQNSDKVVNLPEQPLNPKISH 53
>At2g37080.1 68415.m04550 myosin heavy chain-related low similarity
to myosin heavy chain [Rana catesbeiana] GI:4249701
Length = 583
Score = 26.2 bits (55), Expect = 4.6
Identities = 18/51 (35%), Positives = 27/51 (52%)
Frame = +3
Query: 69 RVKENERLLKEAKAAGKTVNLKRQPAPPKAAHIVSGTEKPVLLAPIPYEFV 221
R++ NE L K G+ + K A +A IVSGTEK + +A + E +
Sbjct: 185 RMELNETLSLVEKLRGELFDAKEGEA--QAHEIVSGTEKQLEIANLTLEML 233
>At2g12940.1 68415.m01419 expressed protein
Length = 294
Score = 26.2 bits (55), Expect = 4.6
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = +1
Query: 103 PRLPARPST*RDSQLPLKLPTSSVELRNPS 192
P L PS+ R + LPL P++S+E R+ S
Sbjct: 26 PPLSPSPSSSRRNSLPLMNPSTSMESRDSS 55
>At2g42530.1 68415.m05263 cold-responsive protein / cold-regulated
protein (cor15b) nearly identical to cold-regulated gene
cor15b [Arabidopsis thaliana] GI:456016; contains Pfam
profile PF02987: Late embryogenesis abundant protein
Length = 141
Score = 25.4 bits (53), Expect = 8.1
Identities = 15/37 (40%), Positives = 19/37 (51%)
Frame = +3
Query: 66 KRVKENERLLKEAKAAGKTVNLKRQPAPPKAAHIVSG 176
K ++ NE +EAK A V K + A KAA V G
Sbjct: 94 KTIEANETATEEAKKALDYVTEKGKEAGNKAAEFVEG 130
>At1g43780.1 68414.m05043 serine carboxypeptidase S10 family protein
similar to serine carboxylase II-3 GB:CAA55478 GI:474392
from [Hordeum vulgare]
Length = 479
Score = 25.4 bits (53), Expect = 8.1
Identities = 12/25 (48%), Positives = 14/25 (56%)
Frame = -2
Query: 211 YGIGASKTGFSVPLTMWAALGGAGC 137
Y + A K S PLT+W GG GC
Sbjct: 69 YFVEAEKQPHSKPLTLWLN-GGPGC 92
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,385,256
Number of Sequences: 28952
Number of extensions: 110563
Number of successful extensions: 378
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 372
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 378
length of database: 12,070,560
effective HSP length: 71
effective length of database: 10,014,968
effective search space used: 330493944
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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