Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30186
         (516 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1442.07c |||ubiquitin/metalloprotease fusion protein|Schizos...    27   1.3  
SPBC12D12.04c |pck2|sts6, pkc1|protein kinase C |Schizosaccharom...    25   5.1  
SPBC3B8.07c |dsd1|SDCB3B8.07c|dihydroceramide delta-4 desaturase...    25   8.9  

>SPCC1442.07c |||ubiquitin/metalloprotease fusion
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 282

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = +3

Query: 135 KPGRYVADPGRYDPSRDN 188
           KPG YV+D   Y P +DN
Sbjct: 235 KPGSYVSDRASYTPQQDN 252


>SPBC12D12.04c |pck2|sts6, pkc1|protein kinase C |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1016

 Score = 25.4 bits (53), Expect = 5.1
 Identities = 17/65 (26%), Positives = 23/65 (35%), Gaps = 3/65 (4%)
 Frame = +1

Query: 271  DPVLLEVPEEPTSEPRRTSANTLVMLTRDPAXXXXXXXXXXXXXQSHPHTLPARWS---H 441
            D +L + P  P   PR + +    +LTRDP               +HP      W    H
Sbjct: 893  DAILSDEPLYPIHMPRDSVSILQQLLTRDPKKRLGSGPNDAEDVMTHPFFSNINWDDIYH 952

Query: 442  PHTLP 456
              T P
Sbjct: 953  KRTQP 957


>SPBC3B8.07c |dsd1|SDCB3B8.07c|dihydroceramide delta-4
           desaturase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 362

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 11/37 (29%), Positives = 20/37 (54%)
 Frame = +3

Query: 42  LSLTVALAAETGKYTPFQYNRVYSTVSPFVYKPGRYV 152
           ++ T  +A+  GK TP +    Y  ++ FVY  G ++
Sbjct: 255 MTRTRLIASGPGKETPLETFSYYGPLNFFVYNAGYHI 291


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,706,947
Number of Sequences: 5004
Number of extensions: 27160
Number of successful extensions: 83
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 82
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 83
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)