Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30184
         (516 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization prot...    22   4.3  
DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    21   5.7  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          21   10.0 

>DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization protein
           protein.
          Length = 250

 Score = 21.8 bits (44), Expect = 4.3
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -1

Query: 147 SAALISLGTSGATSSKATGADSATS 73
           S +  SLGT+ +TSS A+  +S  S
Sbjct: 172 SVSECSLGTASSTSSTASSRNSDRS 196


>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 21.4 bits (43), Expect = 5.7
 Identities = 6/14 (42%), Positives = 8/14 (57%)
 Frame = -3

Query: 403 LYWHWYYRGWFFRN 362
           ++W W   GW  RN
Sbjct: 174 IHWIWTPHGWMRRN 187


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 20.6 bits (41), Expect = 10.0
 Identities = 9/25 (36%), Positives = 12/25 (48%)
 Frame = +1

Query: 385 NTSASRGVSNGNRIGNQKRIAQETG 459
           NT+AS   +N N   N    A + G
Sbjct: 234 NTNASNNNNNNNNNNNNNNGANDNG 258


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 107,782
Number of Sequences: 438
Number of extensions: 2283
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14354847
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)