Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV30184
(516 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g20970.1 68414.m02625 adhesin-related contains TIGRFAM TIGR01... 35 0.028
At3g28840.1 68416.m03598 expressed protein 34 0.049
At5g05560.1 68418.m00604 E3 ubiquitin ligase, putative E3, ubiqu... 33 0.15
At2g45000.1 68415.m05603 expressed protein contains Pfam profile... 33 0.15
At1g12080.1 68414.m01396 expressed protein 33 0.15
At4g28180.1 68417.m04040 expressed protein 32 0.26
At1g10390.1 68414.m01171 nucleoporin family protein contains Pfa... 32 0.26
At4g21670.1 68417.m03139 double-stranded RNA-binding domain (DsR... 31 0.35
At1g12080.2 68414.m01397 expressed protein 31 0.35
At1g72150.1 68414.m08342 SEC14 cytosolic factor family protein /... 31 0.46
At4g29060.1 68417.m04157 elongation factor Ts family protein sim... 31 0.61
At1g49490.1 68414.m05547 leucine-rich repeat family protein / ex... 31 0.61
At1g62480.1 68414.m07050 vacuolar calcium-binding protein-relate... 30 0.80
At5g66730.1 68418.m08412 zinc finger (C2H2 type) family protein ... 30 1.1
At5g24710.1 68418.m02919 WD-40 repeat family protein contains 3 ... 29 1.9
At3g28780.1 68416.m03592 glycine-rich protein similar to H41 gen... 29 1.9
At3g05900.1 68416.m00664 neurofilament protein-related similar t... 29 1.9
At4g01050.1 68417.m00142 hydroxyproline-rich glycoprotein family... 29 2.5
At3g24870.1 68416.m03119 expressed protein 29 2.5
At5g05010.1 68418.m00532 clathrin adaptor complexes medium subun... 28 3.2
At4g00380.1 68417.m00052 XH/XS domain-containing protein / XS zi... 28 3.2
At1g26150.1 68414.m03192 protein kinase family protein similar t... 28 3.2
At1g22450.1 68414.m02806 cytochrome c oxidase subunit 6b, putati... 28 3.2
At1g15910.1 68414.m01908 XH/XS domain-containing protein / XS zi... 28 3.2
At2g28200.1 68415.m03424 zinc finger (C2H2 type) family protein ... 28 4.3
At1g08170.1 68414.m00902 histone H2B family protein similar to h... 28 4.3
At5g23890.1 68418.m02806 expressed protein weak similarity to SP... 27 5.7
At2g46310.1 68415.m05760 AP2 domain-containing transcription fac... 27 5.7
At2g11005.1 68415.m01177 glycine-rich protein 27 5.7
At5g11430.1 68418.m01335 transcription elongation factor-related... 27 7.5
At5g07040.1 68418.m00797 zinc finger (C3HC4-type RING finger) fa... 27 7.5
At2g29870.1 68415.m03627 major intrinsic family protein / MIP fa... 27 7.5
At2g13100.1 68415.m01436 glycerol-3-phosphate transporter, putat... 27 7.5
At1g72090.1 68414.m08333 radical SAM domain-containing protein /... 27 7.5
At1g13740.1 68414.m01613 expressed protein 27 7.5
At4g39110.1 68417.m05538 protein kinase family protein contains ... 27 9.9
At3g52210.1 68416.m05735 mRNA capping enzyme family protein cont... 27 9.9
At3g24880.1 68416.m03120 expressed protein 27 9.9
At1g78650.1 68414.m09166 expressed protein weak similarity to DN... 27 9.9
At1g54970.1 68414.m06278 proline-rich family protein similar to ... 27 9.9
At1g15030.1 68414.m01796 expressed protein 27 9.9
>At1g20970.1 68414.m02625 adhesin-related contains TIGRFAM
TIGR01612: reticulocyte binding protein; contains
TIGRFAM TIGR00864: polycystin cation channel protein;
similar to fimbriae-associated protein Fap1
[Streptococcus parasanguinis] (GI:3929312)
Length = 1498
Score = 35.1 bits (77), Expect = 0.028
Identities = 31/97 (31%), Positives = 49/97 (50%), Gaps = 4/97 (4%)
Frame = +2
Query: 68 PLDVAESAPVALDEVAPEVPSEI-KAADVIETA---SIPASESSPIVASETVLGITSEAL 235
P+ V E PV+++ P V SE+ +++DV T+ + AS+ + S TV + SE
Sbjct: 293 PVTVLE--PVSVENGHPPVESELERSSDVPFTSVAEKVNASDGEVLPDSGTVDVVVSEVS 350
Query: 236 SDVPLEIPVPVAELEQVQPTEVPTVVESETLAKPAEE 346
SDVP E A QP+ +VVE+ +E+
Sbjct: 351 SDVPAETQALNAISLDSQPSGKDSVVENGNSKSESED 387
>At3g28840.1 68416.m03598 expressed protein
Length = 391
Score = 34.3 bits (75), Expect = 0.049
Identities = 32/106 (30%), Positives = 47/106 (44%), Gaps = 1/106 (0%)
Frame = -1
Query: 396 GTGITEAGSSATRGILGSSAGFANVSDSTTVGTSVGCTCSSSATGTGISRGTSDKASLVI 217
G G T G++A+ G++AG SD+ GT+ G T S + T G + A+
Sbjct: 257 GYGATAGGATASGA--GTAAGGTTASDA---GTAAGTTASGAGTAAGGTTAAGAGAAAGA 311
Query: 216 PNTVSL-ATIGEDSLAGIEAVSITSAALISLGTSGATSSKATGADS 82
A G + AG + S S+ + T+G TSS T A S
Sbjct: 312 GAAAGAGAAAGGTTAAGGVSGSYGSSGGSASNTNGGTSSCGTSACS 357
Score = 29.5 bits (63), Expect = 1.4
Identities = 16/49 (32%), Positives = 23/49 (46%)
Frame = -1
Query: 396 GTGITEAGSSATRGILGSSAGFANVSDSTTVGTSVGCTCSSSATGTGIS 250
G G G++A G+ GS + +T GTS C S+ + G G S
Sbjct: 316 GAGAAAGGTTAAGGVSGSYGSSGGSASNTNGGTS-SCGTSACSNGGGAS 363
>At5g05560.1 68418.m00604 E3 ubiquitin ligase, putative E3,
ubiquitin ligase; contains similarity to Apc1/Tsg24
protein, the largest subunit of human anaphase-promoting
complex (APC/C) GI:11967711 from [Homo sapiens]
Length = 1678
Score = 32.7 bits (71), Expect = 0.15
Identities = 23/79 (29%), Positives = 35/79 (44%)
Frame = +2
Query: 137 KAADVIETASIPASESSPIVASETVLGITSEALSDVPLEIPVPVAELEQVQPTEVPTVVE 316
+A +V + +P S SPI+ S +L E + P PVA + + ++P +
Sbjct: 143 QAGEVNPPSHVPFSPVSPILGSREMLRQRKEVGNSSPQNFHSPVAH-DLISKRDMPCMSS 201
Query: 317 SETLAKPAEEPSIPLVAEE 373
L P EEP P EE
Sbjct: 202 HLILRDPLEEPG-PTYVEE 219
>At2g45000.1 68415.m05603 expressed protein contains Pfam profile:
PF05064 Nsp1-like C-terminal region
Length = 739
Score = 32.7 bits (71), Expect = 0.15
Identities = 28/106 (26%), Positives = 47/106 (44%), Gaps = 3/106 (2%)
Frame = -1
Query: 384 TEAGSSATRGILGSSAGFA---NVSDSTTVGTSVGCTCSSSATGTGISRGTSDKASLVIP 214
T S+A+ +S GF+ + + STT T+ ++++ + S GTS + +
Sbjct: 318 TSNTSNASASPFSASTGFSFLKSTASSTTSSTTPSAPPQTASSSSSFSFGTSANSGFNLS 377
Query: 213 NTVSLATIGEDSLAGIEAVSITSAALISLGTSGATSSKATGADSAT 76
S A S A SI + S T ATS+ A+ A ++T
Sbjct: 378 TGSSAAPASSTSGA---VFSIATTTTTSSSTPAATSAPASSAPAST 420
>At1g12080.1 68414.m01396 expressed protein
Length = 104
Score = 32.7 bits (71), Expect = 0.15
Identities = 27/105 (25%), Positives = 46/105 (43%)
Frame = +2
Query: 71 LDVAESAPVALDEVAPEVPSEIKAADVIETASIPASESSPIVASETVLGITSEALSDVPL 250
++V + PVA++ V EVP++ V+ET + +E +++ P+
Sbjct: 4 VEVEQVTPVAVENV--EVPTKTVEETVVETEKKDEETEKKTEEKDE----KTEVITETPV 57
Query: 251 EIPVPVAELEQVQPTEVPTVVESETLAKPAEEPSIPLVAEEPASV 385
V E + + TE P VVE E + EE + A E +V
Sbjct: 58 ---VEEEEKKAEEVTETPAVVEEEKKTEVVEEKQTEVAAAEEVAV 99
>At4g28180.1 68417.m04040 expressed protein
Length = 256
Score = 31.9 bits (69), Expect = 0.26
Identities = 21/90 (23%), Positives = 41/90 (45%), Gaps = 3/90 (3%)
Frame = +2
Query: 140 AADVIETASIPASESSPIVASETVLGITSEALS---DVPLEIPVPVAELEQVQPTEVPTV 310
+A + + A++ P + E+V + +++S +P+ +PVPV +L PTV
Sbjct: 6 SAGKVTAPPVAAAQIPPPLEEESVKEVVVQSVSVSVPIPISVPVPVPDL----VPSAPTV 61
Query: 311 VESETLAKPAEEPSIPLVAEEPASVIPVPV 400
+SE P P ++ + + V V
Sbjct: 62 SDSEAQVPLPLSPPAPEISHSKSDICSVSV 91
>At1g10390.1 68414.m01171 nucleoporin family protein contains Pfam
profiles: PF04096 nucleoporin autopeptidase, PF03093
nucleoporin FG repeat family
Length = 1041
Score = 31.9 bits (69), Expect = 0.26
Identities = 30/105 (28%), Positives = 46/105 (43%), Gaps = 2/105 (1%)
Frame = -1
Query: 378 AGSSATRGILGSSAGFANVSDSTTVGTS--VGCTCSSSATGTGISRGTSDKASLVIPNTV 205
+GSS T + GSS+ F + S G+S G SSS G+ +G + P+T+
Sbjct: 482 SGSSTTTSVFGSSSAFGTTTPSPLFGSSSTPGFGSSSSIFGSAPGQGATPAFGNSQPSTL 541
Query: 204 SLATIGEDSLAGIEAVSITSAALISLGTSGATSSKATGADSATSK 70
+T A T +A G G +S+ A G +S +K
Sbjct: 542 FNSTPSTGQTG--SAFGQTGSA---FGQFGQSSAPAFGQNSIFNK 581
>At4g21670.1 68417.m03139 double-stranded RNA-binding domain
(DsRBD)-containing protein contains Pfam profile
PF00035: Double-stranded RNA binding motif
Length = 981
Score = 31.5 bits (68), Expect = 0.35
Identities = 28/99 (28%), Positives = 48/99 (48%), Gaps = 3/99 (3%)
Frame = +2
Query: 92 PVALDEVAP-EVPSEIKAADVIETASIPASESSPIVASETVLGITSEALSDVPLEIPVPV 268
P++ D +A EV +K A +A +PA+ P +A+ + S + VP +PV V
Sbjct: 472 PLSFDGMADTEVERRLKEAISASSAVLPAANIDPRIAAPVQFPMASASSVSVP--VPVQV 529
Query: 269 AELEQVQPTEVPTVVESETLAKPAEEPSIP--LVAEEPA 379
+ + +QP+ + S +P + SI LV EP+
Sbjct: 530 VQ-QAIQPSAM--AFPSIPFQQPQQPTSIAKHLVPSEPS 565
>At1g12080.2 68414.m01397 expressed protein
Length = 138
Score = 31.5 bits (68), Expect = 0.35
Identities = 26/96 (27%), Positives = 40/96 (41%), Gaps = 2/96 (2%)
Frame = +2
Query: 104 DEVAPEVPSEIKAADVIETASIPASESSPIVASETVLGITS-EALSDVPLEIPVPVAELE 280
+E P V + A ++ET E + ET + ++V E PV E +
Sbjct: 38 EESVPAVTEQKSEAPIVETNEEVVVEEAEKKDEETEKKTEEKDEKTEVITETPVVEEEEK 97
Query: 281 QVQP-TEVPTVVESETLAKPAEEPSIPLVAEEPASV 385
+ + TE P VVE E + EE + A E +V
Sbjct: 98 KAEEVTETPAVVEEEKKTEVVEEKQTEVAAAEEVAV 133
Score = 27.9 bits (59), Expect = 4.3
Identities = 18/48 (37%), Positives = 24/48 (50%)
Frame = +2
Query: 230 ALSDVPLEIPVPVAELEQVQPTEVPTVVESETLAKPAEEPSIPLVAEE 373
A +V PV V +E T TVVE+E +P E S+P V E+
Sbjct: 2 ATVEVEQVTPVAVENVEVPTKTVEETVVETEVTQQPEE--SVPAVTEQ 47
>At1g72150.1 68414.m08342 SEC14 cytosolic factor family protein /
phosphoglyceride transfer family protein similar to
SEC14-like protein 2 (Alpha-tocopherol associated
protein) (TAP) (bTAP) (Fragment) (SP:P58875) {Bos
taurus}; similar to GI:807956 from [Saccharomyces
cerevisiae]; contains Pfam PF00650 : CRAL/TRIO domain;
contains Pfam PF03765 : CRAL/TRIO, N-terminus
Length = 573
Score = 31.1 bits (67), Expect = 0.46
Identities = 23/74 (31%), Positives = 36/74 (48%), Gaps = 6/74 (8%)
Frame = +2
Query: 50 DAGETVPLDVAE----SAPVALDEVAP--EVPSEIKAADVIETASIPASESSPIVASETV 211
D T+P VAE +APV+ ++ P EV E +A S+ E +V +E V
Sbjct: 25 DKEVTIPTPVAEKEEVAAPVSDEKAVPEKEVTPEKEAPAAEAEKSVSVKEEETVVVAEKV 84
Query: 212 LGITSEALSDVPLE 253
+ +T+E + LE
Sbjct: 85 VVLTAEEVQKKALE 98
>At4g29060.1 68417.m04157 elongation factor Ts family protein
similar to SP|P35019 Elongation factor Ts (EF-Ts)
{Galdieria sulphuraria}; contains Pfam profiles PF00627:
UBA/TS-N domain, PF00889: Elongation factor TS, PF00575:
S1 RNA binding domain
Length = 953
Score = 30.7 bits (66), Expect = 0.61
Identities = 25/89 (28%), Positives = 38/89 (42%)
Frame = +2
Query: 80 AESAPVALDEVAPEVPSEIKAADVIETASIPASESSPIVASETVLGITSEALSDVPLEIP 259
AE PV V PE + + +A+V E+ +PA +S V S + E + E
Sbjct: 362 AEKPPVETP-VEPEAEASVTSAEVEESVCVPAEVTSEEVPSSETPKVVEEEVIATKAEDD 420
Query: 260 VPVAELEQVQPTEVPTVVESETLAKPAEE 346
P E EQ + + E+E + P E
Sbjct: 421 SPEKE-EQTE--TLAAAAEAEEVVPPIPE 446
Score = 29.1 bits (62), Expect = 1.9
Identities = 22/66 (33%), Positives = 32/66 (48%)
Frame = +2
Query: 155 ETASIPASESSPIVASETVLGITSEALSDVPLEIPVPVAELEQVQPTEVPTVVESETLAK 334
E A P E+ V E +TS + + + +P V E+V +E P VVE E +A
Sbjct: 360 EEAEKPPVETP--VEPEAEASVTSAEVEE-SVCVPAEVTS-EEVPSSETPKVVEEEVIAT 415
Query: 335 PAEEPS 352
AE+ S
Sbjct: 416 KAEDDS 421
>At1g49490.1 68414.m05547 leucine-rich repeat family protein /
extensin family protein contains similarity to disease
resistance protein GI:3894383 from [Lycopersicon
esculentum]; contains leucine-rich repeats,
Pfam:PF00560; contains proline rich extensin domains,
INTERPRO:IPR002965
Length = 847
Score = 30.7 bits (66), Expect = 0.61
Identities = 23/78 (29%), Positives = 34/78 (43%), Gaps = 7/78 (8%)
Frame = +2
Query: 170 PASESSPIVASETVLGITSEALSDV-----PLEIPVPV-AELEQVQPTEVPTVVESETLA 331
P +P +SET T + SD P++ P PV + +PT+VPT SE+
Sbjct: 653 PTPTQAPTPSSETTQVPTPSSESDQSQILSPVQAPTPVQSSTPSSEPTQVPTPSSSESYQ 712
Query: 332 KPAEEP-SIPLVAEEPAS 382
P P P + P +
Sbjct: 713 APNLSPVQAPTPVQAPTT 730
>At1g62480.1 68414.m07050 vacuolar calcium-binding protein-related
contains weak similarity to vacuolar calcium binding
protein [Raphanus sativus] gi|9049359|dbj|BAA99394
Length = 152
Score = 30.3 bits (65), Expect = 0.80
Identities = 31/108 (28%), Positives = 48/108 (44%), Gaps = 6/108 (5%)
Frame = +2
Query: 59 ETVPLDVAES-APVAL---DEVAPEVPSEIKAADV--IETASIPASESSPIVASETVLGI 220
E++P V ES APV + D V E I+ + +ET + + ET + +
Sbjct: 35 ESLPAPVTESQAPVEVTTKDLVVEETEKPIEETEEAQVETPEVVEIKKDEEAPVETPVVV 94
Query: 221 TSEALSDVPLEIPVPVAELEQVQPTEVPTVVESETLAKPAEEPSIPLV 364
E+ ++ +E E+E+ + E P VVE E KP E P V
Sbjct: 95 EDESKTEEVVEAKKE-EEVEEKKTEEAPVVVEEE--KKPEAEEEKPAV 139
>At5g66730.1 68418.m08412 zinc finger (C2H2 type) family protein
contains Pfam domain, PF00096: Zinc finger, C2H2 type
Length = 500
Score = 29.9 bits (64), Expect = 1.1
Identities = 28/108 (25%), Positives = 45/108 (41%), Gaps = 8/108 (7%)
Frame = -1
Query: 390 GITEAGSSATRG--ILGSSAGFANVSD----STTVGTSVGCTCSSSATGTGISRGTSDKA 229
G T +G S RG I+ +++ +S+ S G +G CSS +G+G+ +
Sbjct: 382 GSTGSGGSLLRGLGIVSTTSSSMELSNHDALSLAPGLGLGLPCSSGGSGSGLKELMMGNS 441
Query: 228 SLVIPNTVSLATIGEDSLAGI--EAVSITSAALISLGTSGATSSKATG 91
S+ P +L +G G SA L S+G G +G
Sbjct: 442 SVFGPKQTTLDFLGLGRAVGNGGNTGGGLSALLTSIGGGGGIDLFGSG 489
>At5g24710.1 68418.m02919 WD-40 repeat family protein contains 3 Pfam
PF00400: WD domain, G-beta repeats;
Length = 1327
Score = 29.1 bits (62), Expect = 1.9
Identities = 27/100 (27%), Positives = 39/100 (39%), Gaps = 1/100 (1%)
Frame = +2
Query: 80 AESAPVALDEVA-PEVPSEIKAADVIETASIPASESSPIVASETVLGITSEALSDVPLEI 256
A P+ + A PEV + + + +I A SS A +T + A ++ P
Sbjct: 1139 APKKPLLTQKTAQPEVAKPLALEEPTKPLAIEAPPSSE--APQTESAPETAAAAESPAPE 1196
Query: 257 PVPVAELEQVQPTEVPTVVESETLAKPAEEPSIPLVAEEP 376
VAE V SET A P + P V+E P
Sbjct: 1197 TAAVAESPAPGTAAVAEAPASETAAAPVDGPVTETVSEPP 1236
>At3g28780.1 68416.m03592 glycine-rich protein similar to H41 gene
for histone protein GB:X15142 GI:3204 [Physarum
polycephalum]
Length = 614
Score = 29.1 bits (62), Expect = 1.9
Identities = 33/102 (32%), Positives = 43/102 (42%), Gaps = 1/102 (0%)
Frame = -1
Query: 384 TEAGSSA-TRGILGSSAGFANVSDSTTVGTSVGCTCSSSATGTGISRGTSDKASLVIPNT 208
T+ GS T G GSSAG + G++ G S +T G + G S ++
Sbjct: 158 TDGGSYGDTTGDSGSSAGSPSYPSDDGSGSTAG--GPSGSTTDGSAGGESSMGG----DS 211
Query: 207 VSLATIGEDSLAGIEAVSITSAALISLGTSGATSSKATGADS 82
S GE A A S +A S G +GA S A ADS
Sbjct: 212 SSAGAAGESGSAA-TADSGDAAGADSGGAAGADSGGAASADS 252
Score = 27.1 bits (57), Expect = 7.5
Identities = 31/112 (27%), Positives = 44/112 (39%), Gaps = 4/112 (3%)
Frame = -1
Query: 399 TGTGITEAGSSATRGILGSSAGFANVSDSTTVGTSVGCTC----SSSATGTGISRGTSDK 232
TG + AGS + GS + S STT G++ G + SSSA G S +
Sbjct: 167 TGDSGSSAGSPSYPSDDGSGSTAGGPSGSTTDGSAGGESSMGGDSSSAGAAGESGSAATA 226
Query: 231 ASLVIPNTVSLATIGEDSLAGIEAVSITSAALISLGTSGATSSKATGADSAT 76
S S G DS G + AA + GA ++ +G + T
Sbjct: 227 DSGDAAGADSGGAAGADS-GGAASADSGGAAAGETASGGAAAADTSGGSAET 277
>At3g05900.1 68416.m00664 neurofilament protein-related similar to
NF-180 (GI:632549) [Petromyzon marinus] similar to
Neurofilament triplet H protein (200 kDa neurofilament
protein) (Neurofilament heavy polypeptide) (NF-H)
(Swiss-Prot:P12036) [Homo sapiens]
Length = 673
Score = 29.1 bits (62), Expect = 1.9
Identities = 28/102 (27%), Positives = 48/102 (47%), Gaps = 4/102 (3%)
Frame = +2
Query: 101 LDEVAPEVPSEIKAADVIETASI-PASESSPIVASETVLGITSEALSDVPLEIPVPVAEL 277
+ E A + EI ++D + + PAS+S+P+V E + T + E P V E+
Sbjct: 21 VSEEAKLMEKEIISSDSADVVNDKPASDSNPVVTKEEEIDQT--PAGEPEKESPAVVEEV 78
Query: 278 EQVQPTEVPT-VVESETLAKPAEEPSI--PLVAEEPASVIPV 394
V E T V+ E K AE+ + P++ +E + + V
Sbjct: 79 GAVVKAEESTETVKHENGEKGAEQVELKEPILVKETVAEVNV 120
>At4g01050.1 68417.m00142 hydroxyproline-rich glycoprotein family
protein
Length = 466
Score = 28.7 bits (61), Expect = 2.5
Identities = 24/97 (24%), Positives = 37/97 (38%)
Frame = +2
Query: 92 PVALDEVAPEVPSEIKAADVIETASIPASESSPIVASETVLGITSEALSDVPLEIPVPVA 271
P + A P+ + A TA+ + P+ ETV T+ VP PVP
Sbjct: 356 PQSTSNKALPAPATVTAEAESATATTTTVDK-PVPEPETVAATTTTVDKPVPEPEPVP-- 412
Query: 272 ELEQVQPTEVPTVVESETLAKPAEEPSIPLVAEEPAS 382
E V + V ++ + +P E + P P S
Sbjct: 413 --EPVPVPAIEAAVAAQVITEPTETEAKPKPHSRPLS 447
>At3g24870.1 68416.m03119 expressed protein
Length = 1841
Score = 28.7 bits (61), Expect = 2.5
Identities = 21/103 (20%), Positives = 45/103 (43%), Gaps = 2/103 (1%)
Frame = +2
Query: 74 DVAESAPVALDEVAPEVPSEIKAADVIETASIPASESSPIVAS--ETVLGITSEALSDVP 247
+ ++A + + P+ +++K + + ++PA E VAS T + + + +D
Sbjct: 1707 NTTQTASMGTTKGMPQASNDLKNIKAVGSTAVPALEPPSCVASVQSTASKVVNNSNTDSA 1766
Query: 248 LEIPVPVAELEQVQPTEVPTVVESETLAKPAEEPSIPLVAEEP 376
PV Q + V + + + P+EE P + E+P
Sbjct: 1767 GNDPVSTPNQGLAQKHGIKGVTQRQQQSLPSEEKR-PKLPEKP 1808
>At5g05010.1 68418.m00532 clathrin adaptor complexes medium
subunit-related contains pfam profile: PF00928 adaptor
complexes medium subunit family
Length = 527
Score = 28.3 bits (60), Expect = 3.2
Identities = 25/82 (30%), Positives = 35/82 (42%), Gaps = 4/82 (4%)
Frame = -1
Query: 372 SSATRGILGSSAGFANVSDSTTVGTSVGCTCSSSAT----GTGISRGTSDKASLVIPNTV 205
SS G GS +GF +SD + T SS T +G+ G S K L+
Sbjct: 200 SSGGGGGYGSGSGFGMISDVDPINTKPKDRSRSSVTAPPKSSGMKLGKSGKNQLM----E 255
Query: 204 SLATIGEDSLAGIEAVSITSAA 139
SL GED + ++ + AA
Sbjct: 256 SLKAEGEDVIEDVKPTGQSKAA 277
>At4g00380.1 68417.m00052 XH/XS domain-containing protein / XS zinc
finger domain-containing protein contains Pfam domains
PF03469: XH domain, PF03468: XS domain and PF03470: XS
zinc finger domain
Length = 635
Score = 28.3 bits (60), Expect = 3.2
Identities = 13/34 (38%), Positives = 23/34 (67%)
Frame = -1
Query: 270 ATGTGISRGTSDKASLVIPNTVSLATIGEDSLAG 169
A TG+S+G++ +++L N ++LA E+ LAG
Sbjct: 60 AHATGVSKGSATRSALQKSNHLALAKFLENDLAG 93
>At1g26150.1 68414.m03192 protein kinase family protein similar to
Pto kinase interactor 1 GI:3668069 from [Lycopersicon
esculentum]
Length = 760
Score = 28.3 bits (60), Expect = 3.2
Identities = 29/99 (29%), Positives = 34/99 (34%), Gaps = 2/99 (2%)
Frame = +2
Query: 107 EVAPEVPSEIKAADVIETASIPASESSPIVASETVLGITSEALSDVPLEIPVPVAELEQV 286
E +P P +A S P ESSP T T+ S P P P E
Sbjct: 97 EPSPPPPLPTEAPPPANPVSSPPPESSPPPPPPTEAPPTTPITSPSPPTNPPPPPESPPS 156
Query: 287 QPTEVP--TVVESETLAKPAEEPSIPLVAEEPASVIPVP 397
P P + L P+ P L PAS IP P
Sbjct: 157 LPAPDPPSNPLPPPKLVPPSHSPPRHL-PSPPASEIPPP 194
>At1g22450.1 68414.m02806 cytochrome c oxidase subunit 6b, putative
(COX6b) nearly identical to subunit 6b of cytochrome c
oxidase [Arabidopsis thaliana] GI:6518353
Length = 191
Score = 28.3 bits (60), Expect = 3.2
Identities = 23/85 (27%), Positives = 38/85 (44%)
Frame = +2
Query: 92 PVALDEVAPEVPSEIKAADVIETASIPASESSPIVASETVLGITSEALSDVPLEIPVPVA 271
PV + EVAPEV ++ A+ ++T A E SP+ + +V+ SE+ + E+
Sbjct: 30 PVEVKEVAPEVTTQ---AEEVKTEQ--AKEESPVEEAVSVVEEKSESAPE-STEVASEAP 83
Query: 272 ELEQVQPTEVPTVVESETLAKPAEE 346
+ E P E +EE
Sbjct: 84 AAAEDNAEETPAAAEENNDENASEE 108
>At1g15910.1 68414.m01908 XH/XS domain-containing protein / XS zinc
finger domain-containing protein contains Pfam domains
PF03469: XH domain, PF03468: XS domain and PF03470: XS
zinc finger domain
Length = 634
Score = 28.3 bits (60), Expect = 3.2
Identities = 13/34 (38%), Positives = 23/34 (67%)
Frame = -1
Query: 270 ATGTGISRGTSDKASLVIPNTVSLATIGEDSLAG 169
A TG+S+G++ +++L N ++LA E+ LAG
Sbjct: 59 AHATGVSKGSATRSALQKANHLALAMFLENELAG 92
>At2g28200.1 68415.m03424 zinc finger (C2H2 type) family protein
contains Pfam domain, PF00096: Zinc finger, C2H2 type
Length = 284
Score = 27.9 bits (59), Expect = 4.3
Identities = 25/76 (32%), Positives = 36/76 (47%), Gaps = 3/76 (3%)
Frame = -1
Query: 390 GITEAGSSATRGILGSSAGFANVSDS--TTVGTSVGCTCSSSATGTGISRGTSDKASLVI 217
G E GS T+ I G S + T T+V T SSSA G+G R SD+ + +
Sbjct: 2 GQDEVGSDQTQIIKGKRTKRQRSSSTFVVTAATTVTST-SSSAGGSGGERAVSDEYNSAV 60
Query: 216 PNTVSL-ATIGEDSLA 172
+ V+ T E+ +A
Sbjct: 61 SSPVTTDCTQEEEDMA 76
>At1g08170.1 68414.m00902 histone H2B family protein similar to
histone H2B from Chlamydomonas reinhardtii [SP|P54347,
SP|P54346, SP|P50565], Volvox carteri [SP|P16867,
SP|P16868]; contains Pfam profile PF00125 Core histone
H2A/H2B/H3/H4
Length = 243
Score = 27.9 bits (59), Expect = 4.3
Identities = 23/99 (23%), Positives = 39/99 (39%), Gaps = 1/99 (1%)
Frame = +2
Query: 59 ETVPLDVAESA-PVALDEVAPEVPSEIKAADVIETASIPASESSPIVASETVLGITSEAL 235
ET+ + V E P + E A + ++ + ++ E V E L +
Sbjct: 20 ETIKVTVTEEGDPCVITETANDQETQDLTFSIPVGENVTTVEIPVEVPDERSLPVGENVT 79
Query: 236 SDVPLEIPVPVAELEQVQPTEVPTVVESETLAKPAEEPS 352
+ ++IPV + QP E P V E +P E P+
Sbjct: 80 T---VKIPVDDRDESSPQPPETPVEVRDEPSPQPPETPA 115
>At5g23890.1 68418.m02806 expressed protein weak similarity to
SP|P12957 Caldesmon (CDM) {Gallus gallus}
Length = 946
Score = 27.5 bits (58), Expect = 5.7
Identities = 23/99 (23%), Positives = 42/99 (42%), Gaps = 1/99 (1%)
Frame = +2
Query: 59 ETVPLDVAESAPVALDEVAPEVPSEIKAADVIETASIPASESSPIVASETVL-GITSEAL 235
E + LD S V ++ E P + + + + +S S + L GI + A
Sbjct: 242 EPILLDAESSNLVGVENTNSEDPESLLNTEPTNVSDLENHVNSQKEDSLSSLSGIDAYAA 301
Query: 236 SDVPLEIPVPVAELEQVQPTEVPTVVESETLAKPAEEPS 352
S E+P ++L+ ++ + ++ET AEE S
Sbjct: 302 SGTVTELPEVSSQLDSTSKPQIVPLNDTETAFATAEELS 340
>At2g46310.1 68415.m05760 AP2 domain-containing transcription
factor, putative
Length = 294
Score = 27.5 bits (58), Expect = 5.7
Identities = 20/79 (25%), Positives = 29/79 (36%), Gaps = 3/79 (3%)
Frame = +2
Query: 80 AESAPVALDEVAPEVPSEIKAADVIETASIPASE---SSPIVASETVLGITSEALSDVPL 250
AE A + D A + + + P +E +P++ ETV G S S + L
Sbjct: 131 AEEAAIGYDRAAIRIKGHNAQTNFLTPPPSPTTEVLPETPVIDLETVSGCDSARESQISL 190
Query: 251 EIPVPVAELEQVQPTEVPT 307
P V TE T
Sbjct: 191 CSPTSVLRFSHNDETEYRT 209
>At2g11005.1 68415.m01177 glycine-rich protein
Length = 170
Score = 27.5 bits (58), Expect = 5.7
Identities = 20/90 (22%), Positives = 41/90 (45%)
Frame = -1
Query: 396 GTGITEAGSSATRGILGSSAGFANVSDSTTVGTSVGCTCSSSATGTGISRGTSDKASLVI 217
G+ ++ ++ G G S GF + SD+ +V + S G+G G +D + +
Sbjct: 41 GSRDSDGSGDSSGGGSGDSGGFGDNSDNNSVSSDSSGGGSRDGGGSG-DNGNTDDGVVAL 99
Query: 216 PNTVSLATIGEDSLAGIEAVSITSAALISL 127
+ L T G A + +++ AA++ +
Sbjct: 100 VMSFVLVT-GVAPTATVVLMTVAVAAVVGV 128
>At5g11430.1 68418.m01335 transcription elongation factor-related
contains weak similarity to transcription elongation
factors
Length = 871
Score = 27.1 bits (57), Expect = 7.5
Identities = 25/82 (30%), Positives = 37/82 (45%), Gaps = 4/82 (4%)
Frame = +2
Query: 83 ESAPVALDEVAPEVPSEIKAADVIETASIPASESSPIVASETVLGITSEALSDVPLEIPV 262
E+ P +DEV PE + +K D I A+ S GI ++S V V
Sbjct: 501 EAKPEKIDEVTPEFDANVKVDDDISRVE-KAAALSDDKGERAWDGILQLSMSSV-----V 554
Query: 263 PVAEL----EQVQPTEVPTVVE 316
PVA + E+ + +E P +VE
Sbjct: 555 PVAGIFKSGEKAETSEWPAMVE 576
>At5g07040.1 68418.m00797 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 159
Score = 27.1 bits (57), Expect = 7.5
Identities = 25/65 (38%), Positives = 32/65 (49%), Gaps = 10/65 (15%)
Frame = +2
Query: 227 EALSDVPLEIPVPVAE----LEQVQPTEVPTVV--ESETLAKPAEEP-SIPLV---AEEP 376
EA SDV L++P P AE L++ P +V +S L +P P SI L A EP
Sbjct: 47 EATSDVVLDLPSPAAEVKLGLDRPVIESYPRIVLGDSRRLPRPNNGPCSICLCDYEAREP 106
Query: 377 ASVIP 391
IP
Sbjct: 107 VRCIP 111
>At2g29870.1 68415.m03627 major intrinsic family protein / MIP
family protein contains Pfam profile: MIP PF00230
Length = 139
Score = 27.1 bits (57), Expect = 7.5
Identities = 11/18 (61%), Positives = 14/18 (77%)
Frame = +1
Query: 241 CASRNTCSSSGTRASATD 294
CA+RNT SSSG+ S +D
Sbjct: 3 CAARNTMSSSGSSPSGSD 20
>At2g13100.1 68415.m01436 glycerol-3-phosphate transporter, putative
/ glycerol 3-phosphate permease, putative similar to
glycerol-3-phosphate transporter (glycerol 3-phosphate
permease) [Homo sapiens] GI:7543982; contains Pfam
profile PF00083: major facilitator superfamily protein
Length = 493
Score = 27.1 bits (57), Expect = 7.5
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = -3
Query: 307 CWYFSRLHLLEFRYWNRYFERH 242
C +FS+L F YW Y+ RH
Sbjct: 293 CLFFSKLVAYTFLYWLPYYLRH 314
>At1g72090.1 68414.m08333 radical SAM domain-containing protein /
TRAM domain-containing protein contains Pfam profiles
PF00919: UPF0004 family protein, PF04055: radical SAM
domain protein, PF01938: TRAM domain
Length = 601
Score = 27.1 bits (57), Expect = 7.5
Identities = 18/57 (31%), Positives = 25/57 (43%)
Frame = -1
Query: 321 SDSTTVGTSVGCTCSSSATGTGISRGTSDKASLVIPNTVSLATIGEDSLAGIEAVSI 151
+D + T + S SA T I+RG S K LVI V + L G+ V +
Sbjct: 101 ADLWLINTCTVKSPSQSAMSTLITRGRSGKKPLVIAGCVPQGSRDLKELEGVSVVGV 157
>At1g13740.1 68414.m01613 expressed protein
Length = 348
Score = 27.1 bits (57), Expect = 7.5
Identities = 25/98 (25%), Positives = 39/98 (39%), Gaps = 10/98 (10%)
Frame = -1
Query: 390 GITEAGSSATRGILGSSAGFANVSDSTTVGTSVGCT----------CSSSATGTGISRGT 241
G+ G AT G GSS+ + + + G+S C CSS++ G R +
Sbjct: 184 GVDSDGGGATGG--GSSSSLSELDNKNQQGSSNSCNDERSPKIVAGCSSNSGSQGTERPS 241
Query: 240 SDKASLVIPNTVSLATIGEDSLAGIEAVSITSAALISL 127
+A+ V N EDS+ TS L+ +
Sbjct: 242 VTRANKVNENENEKRVRSEDSVDRKGKGMATSTGLVDM 279
>At4g39110.1 68417.m05538 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 878
Score = 26.6 bits (56), Expect = 9.9
Identities = 20/52 (38%), Positives = 29/52 (55%)
Frame = +2
Query: 146 DVIETASIPASESSPIVASETVLGITSEALSDVPLEIPVPVAELEQVQPTEV 301
DV+ S+P S+ SPI S T T+EA + +PVP A++E+ T V
Sbjct: 819 DVVTPGSVPVSDPSPITPSVT----TNEAAT-----VPVP-AKVEENSGTAV 860
>At3g52210.1 68416.m05735 mRNA capping enzyme family protein
contains Pfam profile PF03291: mRNA capping enzyme,
large subunit
Length = 354
Score = 26.6 bits (56), Expect = 9.9
Identities = 15/53 (28%), Positives = 23/53 (43%), Gaps = 2/53 (3%)
Frame = +2
Query: 245 PLEIPVPVAELEQVQPTEVPTVVESETLAKPAEEPSIPL--VAEEPASVIPVP 397
PL P+P E+P + + PAE+PS L + E+ + P P
Sbjct: 293 PLTTPIPFESSNNHDERELPVITVITDASAPAEDPSQGLGKIVEQKGILGPGP 345
>At3g24880.1 68416.m03120 expressed protein
Length = 1957
Score = 26.6 bits (56), Expect = 9.9
Identities = 20/89 (22%), Positives = 39/89 (43%), Gaps = 2/89 (2%)
Frame = +2
Query: 116 PEVPSEIKAADVIETASIPASESSPIVASE--TVLGITSEALSDVPLEIPVPVAELEQVQ 289
P+ +++K + + ++PA E VAS T + + + +D PV Q
Sbjct: 1837 PQASNDLKNIKAVGSTAVPALEPPSCVASVQITASKVVNSSNTDSAGNDPVSTPNQGLAQ 1896
Query: 290 PTEVPTVVESETLAKPAEEPSIPLVAEEP 376
+ V + + + P+EE P + E+P
Sbjct: 1897 KHGIKGVTQRQQQSLPSEEKR-PKLPEKP 1924
>At1g78650.1 68414.m09166 expressed protein weak similarity to DNA
polymerase delta subunit 3 (DNA polymerase delta subunit
p66) (Swiss-Prot:Q15054) [Homo sapiens]
Length = 509
Score = 26.6 bits (56), Expect = 9.9
Identities = 17/57 (29%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Frame = +2
Query: 65 VPLDVAESAPVALD-EVAPEVPSEIKAADVIETASIPASESSPIVASETVLGITSEA 232
V L +S P D +V+PE+ SE A + + + ++S +++E + I SEA
Sbjct: 340 VELSSEDSGPEKPDADVSPEIKSEEPEASKEDRQNTASVDASTTLSTEKIQAIGSEA 396
>At1g54970.1 68414.m06278 proline-rich family protein similar to
proline-rich protein GI:170048 from [Glycine max]
Length = 335
Score = 26.6 bits (56), Expect = 9.9
Identities = 25/86 (29%), Positives = 31/86 (36%), Gaps = 3/86 (3%)
Frame = +2
Query: 152 IETASIPASESSPIVASETVLGITSEALSDVPLE---IPVPVAELEQVQPTEVPTVVESE 322
I TA A S P+ S + P+ +P PV +PT P V
Sbjct: 19 IATADYYAPSSPPVYTSPVNKPTLPPPVYTPPVHKPTLPPPVYTPPVHKPTLSPPVYTKP 78
Query: 323 TLAKPAEEPSIPLVAEEPASVIPVPV 400
TL PA P + PA V PV
Sbjct: 79 TLPPPAYTPPVYNKPTLPAPVYTPPV 104
>At1g15030.1 68414.m01796 expressed protein
Length = 360
Score = 26.6 bits (56), Expect = 9.9
Identities = 12/21 (57%), Positives = 13/21 (61%)
Frame = -3
Query: 139 FNFTWHLRSNFI*SYGCRFSH 77
FNFT R+ SYGCR SH
Sbjct: 6 FNFTQLQRAQIDVSYGCRSSH 26
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,132,706
Number of Sequences: 28952
Number of extensions: 153341
Number of successful extensions: 772
Number of sequences better than 10.0: 41
Number of HSP's better than 10.0 without gapping: 722
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 767
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 937669760
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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