Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30183
         (516 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyce...    30   0.24 
SPAC4H3.14c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    29   0.31 
SPAC3A11.14c |pkl1|klp1, SPAC3H5.03c|kinesin-like protein Pkl1|S...    28   0.95 
SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein Rad50|Schizos...    25   6.7  
SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor Sp...    25   8.9  
SPAC29E6.03c |uso1|SPAC30.07c|ER to Golgi tethering factor Uso1 ...    25   8.9  
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce...    25   8.9  
SPBP8B7.23 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p...    25   8.9  

>SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2104

 Score = 29.9 bits (64), Expect = 0.24
 Identities = 15/37 (40%), Positives = 21/37 (56%)
 Frame = +3

Query: 141  DLESVRVQLEEESEARLDLERQLVKANGEIGHWRSKF 251
            +L   +VQLEEE E  L + +     + EIG  R+KF
Sbjct: 1749 ELNGFKVQLEEEREKNLRIRQDNRHMHAEIGDIRTKF 1785


>SPAC4H3.14c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 345

 Score = 29.5 bits (63), Expect = 0.31
 Identities = 13/49 (26%), Positives = 30/49 (61%)
 Frame = +3

Query: 354 KINNVEKQKSRLQSEVEVLIIDLEKANGTARELQKRTEQLERVNIEIKS 500
           +I ++ +++ +L+ E+E L  + E+AN    + +K+ E LE    E+++
Sbjct: 147 QITDLLEEQQQLKLEIERLEAETERANSETEQYEKQKEALEEEYEELRN 195



 Score = 24.6 bits (51), Expect = 8.9
 Identities = 12/48 (25%), Positives = 22/48 (45%)
 Frame = +3

Query: 369 EKQKSRLQSEVEVLIIDLEKANGTARELQKRTEQLERVNIEIKSRLEE 512
           E+Q + L  E + L +++E+           TEQ E+    ++   EE
Sbjct: 145 ERQITDLLEEQQQLKLEIERLEAETERANSETEQYEKQKEALEEEYEE 192


>SPAC3A11.14c |pkl1|klp1, SPAC3H5.03c|kinesin-like protein
           Pkl1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 832

 Score = 27.9 bits (59), Expect = 0.95
 Identities = 16/33 (48%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
 Frame = +3

Query: 411 IIDLEKANG-TARELQKRTEQLERVNIEIKSRL 506
           I D E+ NG  A ELQ R +QLER N ++ ++L
Sbjct: 427 IQDKERNNGQNALELQARIQQLERRNEDMYNKL 459


>SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein
           Rad50|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1290

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 16/59 (27%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
 Frame = +3

Query: 345 LIAKINNVEKQKSRLQSEVEVLIIDLEK--ANGTARELQKRTEQLERVNIEIKSRLEET 515
           L+  I+N+E++   +  E EVL I+L    A+    E+    E+L      ++ ++E T
Sbjct: 782 LVKDISNLEEEIRTIDRETEVLRIELPSSIAHHNLDEIYAEREKLLEKRGYLRKQIERT 840


>SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor
            Spt6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1365

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = -2

Query: 236  VSDLTVSLDQLTFEVQTSFGLLFQLDANGFQIDLNL 129
            VSD  +   QL    QT  G++  LD   F +DL+L
Sbjct: 1082 VSDDFIPPPQLLQVGQTVEGVIISLDEANFMVDLSL 1117


>SPAC29E6.03c |uso1|SPAC30.07c|ER to Golgi tethering factor Uso1
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1044

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 16/49 (32%), Positives = 22/49 (44%)
 Frame = +3

Query: 354  KINNVEKQKSRLQSEVEVLIIDLEKANGTARELQKRTEQLERVNIEIKS 500
            KIN   K       ++  L  DLE A  TA  L K  + ++  N  +KS
Sbjct: 870  KINFGNKLAKEHTEKISSLEKDLEAATKTASTLSKELKTVKSENDSLKS 918


>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1957

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 13/52 (25%), Positives = 27/52 (51%)
 Frame = +3

Query: 342 TLIAKINNVEKQKSRLQSEVEVLIIDLEKANGTARELQKRTEQLERVNIEIK 497
           T I++ +N++ ++  L  + E L   L    G+ ++ +    QLE   +E+K
Sbjct: 326 TRISEFDNLKSERDTLSIKNEKLEKLLRNTIGSLKDSRTSNSQLEEEMVELK 377


>SPBP8B7.23 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 673

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 11/30 (36%), Positives = 14/30 (46%)
 Frame = -3

Query: 442 AVPFAFSKSMMRTSTSLCRRDFCFSTLLIF 353
           A PF   +  +    S C   +CFS LL F
Sbjct: 213 ACPFCLEEKPVAARMSRCGHVYCFSCLLRF 242


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,602,621
Number of Sequences: 5004
Number of extensions: 26813
Number of successful extensions: 111
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 111
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)