Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30183
         (516 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              28   0.050
EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase p...    21   5.7  
AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    21   7.5  
AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    21   7.5  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 28.3 bits (60), Expect = 0.050
 Identities = 12/33 (36%), Positives = 15/33 (45%)
 Frame = -1

Query: 342  SRFAPPVPGCGWSTCDGFPRFXXXXXXXXXQTW 244
            +R  PPVPG  ++TCD   R           TW
Sbjct: 1650 NRKLPPVPGSNYNTCDRIKRGTVIRSIRSHSTW 1682


>EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase
           protein.
          Length = 620

 Score = 21.4 bits (43), Expect = 5.7
 Identities = 7/33 (21%), Positives = 18/33 (54%)
 Frame = +2

Query: 296 SQVLHPHPGTGGANRDPHRENQQR*KTEVSSAE 394
           +++  PH      ++ P+R  + + +T++ S E
Sbjct: 375 ARIFSPHEENESVDKHPNRRARGQLRTKIESGE 407


>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 21.0 bits (42), Expect = 7.5
 Identities = 7/19 (36%), Positives = 10/19 (52%)
 Frame = -1

Query: 168 PVGRERIPNRSQPGAGWPQ 112
           P+G + +      G GWPQ
Sbjct: 567 PIGGDSLERFDFCGCGWPQ 585


>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 21.0 bits (42), Expect = 7.5
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = +1

Query: 58  NSKTHAAGLRMRREGALC 111
           N   +AA + +R+EG LC
Sbjct: 287 NESLNAARMLIRQEGLLC 304


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 109,231
Number of Sequences: 438
Number of extensions: 2266
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14354847
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)