Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV30183
(516 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g03080.1 68414.m00282 kinase interacting family protein simil... 32 0.20
At5g58320.2 68418.m07301 kinase interacting protein-related low ... 31 0.46
At1g03230.1 68414.m00301 extracellular dermal glycoprotein, puta... 31 0.46
At1g03220.1 68414.m00300 extracellular dermal glycoprotein, puta... 31 0.46
At5g46070.1 68418.m05665 guanylate-binding family protein contai... 29 1.4
At4g27595.1 68417.m03964 protein transport protein-related low s... 29 1.4
At3g04990.1 68416.m00542 hypothetical protein 29 1.9
At1g18190.1 68414.m02262 expressed protein similar to golgin-84 ... 29 1.9
At1g80360.1 68414.m09407 aminotransferase class I and II family ... 29 2.5
At4g14760.1 68417.m02271 M protein repeat-containing protein con... 28 3.2
At1g05320.1 68414.m00539 myosin-related similar to non-muscle my... 28 3.2
At5g48400.2 68418.m05985 glutamate receptor family protein (GLR1... 28 4.3
At5g48400.1 68418.m05984 glutamate receptor family protein (GLR1... 28 4.3
At4g01270.1 68417.m00168 zinc finger (C3HC4-type RING finger) fa... 28 4.3
At1g27650.1 68414.m03379 U2 snRNP auxiliary factor small subunit... 27 5.7
At5g58320.1 68418.m07300 kinase interacting protein-related low ... 27 7.5
At5g27220.1 68418.m03247 protein transport protein-related low s... 27 7.5
At4g32770.1 68417.m04662 tocopherol cyclase, chloroplast / vitam... 27 7.5
At3g19290.1 68416.m02446 ABA-responsive element-binding protein ... 27 7.5
At2g14680.1 68415.m01651 myosin heavy chain-related contains wea... 27 7.5
At5g47380.1 68418.m05839 expressed protein contains Pfam profile... 27 9.9
At1g13220.2 68414.m01534 nuclear matrix constituent protein-rela... 27 9.9
>At1g03080.1 68414.m00282 kinase interacting family protein similar
to kinase interacting protein 1 (GI:13936326) [Petunia
integrifolia]
Length = 1744
Score = 32.3 bits (70), Expect = 0.20
Identities = 18/53 (33%), Positives = 30/53 (56%)
Frame = +3
Query: 348 IAKINNVEKQKSRLQSEVEVLIIDLEKANGTARELQKRTEQLERVNIEIKSRL 506
+ K++N+E + SR Q + VLI E+A E++ E L +V +E +S L
Sbjct: 240 LEKLSNLESEVSRAQEDSRVLI---ERATRAEAEVETLRESLSKVEVEKESSL 289
>At5g58320.2 68418.m07301 kinase interacting protein-related low
similarity to kinase interacting protein 1 [Petunia
integrifolia] GI:13936326
Length = 558
Score = 31.1 bits (67), Expect = 0.46
Identities = 18/59 (30%), Positives = 35/59 (59%), Gaps = 5/59 (8%)
Frame = +3
Query: 354 KINNVE-KQKSRLQSEVEVLIIDLEKANGTARELQKRTEQLE----RVNIEIKSRLEET 515
K+NN + +++ +L+SE+EVL ++ + L ++ +LE R+ EIK+R + T
Sbjct: 440 KVNNEKIEEEEKLKSEIEVLTLEKVEKGRCIETLSRKVSELESEISRLGSEIKARDDRT 498
>At1g03230.1 68414.m00301 extracellular dermal glycoprotein,
putative / EDGP, putative similar to extracellular
dermal glycoprotein EDGP precursor [Daucus carota]
GI:285741
Length = 434
Score = 31.1 bits (67), Expect = 0.46
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = -1
Query: 345 GSRFAPPVPGCGWSTCDGFP 286
G+ F+PP PGC +TC FP
Sbjct: 101 GTCFSPPRPGCSNNTCGAFP 120
>At1g03220.1 68414.m00300 extracellular dermal glycoprotein,
putative / EDGP, putative similar to extracellular
dermal glycoprotein EDGP precursor [Daucus carota]
GI:285741
Length = 433
Score = 31.1 bits (67), Expect = 0.46
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = -1
Query: 345 GSRFAPPVPGCGWSTCDGFP 286
G+ F+PP PGC +TC G P
Sbjct: 100 GTCFSPPRPGCSNNTCGGIP 119
>At5g46070.1 68418.m05665 guanylate-binding family protein contains
Pfam domains PF02263: Guanylate-binding protein,
N-terminal domain and PF02841: Guanylate-binding
protein, C-terminal domain
Length = 1060
Score = 29.5 bits (63), Expect = 1.4
Identities = 17/54 (31%), Positives = 32/54 (59%)
Frame = +3
Query: 354 KINNVEKQKSRLQSEVEVLIIDLEKANGTARELQKRTEQLERVNIEIKSRLEET 515
++ N+E+QK+ L+ E++ L + +A L+ R E+ E+ EI S ++ET
Sbjct: 817 QVENLERQKTDLEDELDRLRVSEMEAVSKVTILEARVEEREK---EIGSLIKET 867
>At4g27595.1 68417.m03964 protein transport protein-related low
similarity to SP|P25386 Intracellular protein transport
protein USO1 {Saccharomyces cerevisiae}
Length = 1212
Score = 29.5 bits (63), Expect = 1.4
Identities = 14/49 (28%), Positives = 31/49 (63%)
Frame = +3
Query: 354 KINNVEKQKSRLQSEVEVLIIDLEKANGTARELQKRTEQLERVNIEIKS 500
K N ++ S+L+SE+E+L LEK + L+ + E +E +++++++
Sbjct: 252 KSNEDDEVVSKLKSEIEMLRGKLEKVSILENTLKDQEESIELLHVDLQA 300
>At3g04990.1 68416.m00542 hypothetical protein
Length = 227
Score = 29.1 bits (62), Expect = 1.9
Identities = 16/49 (32%), Positives = 26/49 (53%)
Frame = +3
Query: 366 VEKQKSRLQSEVEVLIIDLEKANGTARELQKRTEQLERVNIEIKSRLEE 512
VE+ L+S+ +L + L+ REL+ + QL +V E+K R E
Sbjct: 74 VEECTEELRSKRNLLTVKLDSLIRVQRELELKDNQLVQVMAELKRRYSE 122
>At1g18190.1 68414.m02262 expressed protein similar to golgin-84
{Homo sapiens} (GI:4191344)
Length = 668
Score = 29.1 bits (62), Expect = 1.9
Identities = 11/27 (40%), Positives = 21/27 (77%)
Frame = +3
Query: 129 QVEIDLESVRVQLEEESEARLDLERQL 209
++E D+E +R +LEE +E ++L+R+L
Sbjct: 492 KLEADIEMMRKELEEPTEVEIELKRRL 518
>At1g80360.1 68414.m09407 aminotransferase class I and II family
protein low similarity to GI:14278621 Aromatic
Aminotransferase from Pyrococcus horikoshii
Length = 394
Score = 28.7 bits (61), Expect = 2.5
Identities = 17/49 (34%), Positives = 23/49 (46%)
Frame = +1
Query: 145 WNPFASNWKRSPKLVWTSNVSWSRLTVRSDTGAPSLRQRLLPGLRKSRK 291
W P ++ +LVW +S + D G P LRQ LL LR+ K
Sbjct: 42 WQPPQKALEKVKELVWDPIIS----SYGPDEGLPELRQALLKKLREENK 86
>At4g14760.1 68417.m02271 M protein repeat-containing protein
contains Pfam profile: PF02370 M protein repeat
Length = 1676
Score = 28.3 bits (60), Expect = 3.2
Identities = 15/42 (35%), Positives = 22/42 (52%)
Frame = +3
Query: 351 AKINNVEKQKSRLQSEVEVLIIDLEKANGTARELQKRTEQLE 476
A + N+E S+ Q E +VL +L REL+ R +LE
Sbjct: 412 ASLRNLESLHSQSQEEQKVLTSELHSRIQMLRELEMRNSKLE 453
>At1g05320.1 68414.m00539 myosin-related similar to non-muscle
myosin II heavy chain (GI:19879404) [Loligo pealei];
ESTs gb|AA042402,gb|ATTS1380 come from this gene
Length = 828
Score = 28.3 bits (60), Expect = 3.2
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = +3
Query: 396 EVEVLIIDLEKANGTARELQKRTEQLERVNIEIKSRL 506
EVE ++ L T EL+K L VNI++ +L
Sbjct: 462 EVEEALLKLNTLESTIEELEKENGDLAEVNIKLNQKL 498
>At5g48400.2 68418.m05985 glutamate receptor family protein (GLR1.2)
plant glutamate receptor family, PMID:11379626
Length = 867
Score = 27.9 bits (59), Expect = 4.3
Identities = 11/34 (32%), Positives = 19/34 (55%)
Frame = +1
Query: 187 VWTSNVSWSRLTVRSDTGAPSLRQRLLPGLRKSR 288
VW +V+WS + T P++ LL +++SR
Sbjct: 328 VWAHDVAWSLASAAEVTRMPTVTSTLLEAIKESR 361
>At5g48400.1 68418.m05984 glutamate receptor family protein (GLR1.2)
plant glutamate receptor family, PMID:11379626
Length = 750
Score = 27.9 bits (59), Expect = 4.3
Identities = 11/34 (32%), Positives = 19/34 (55%)
Frame = +1
Query: 187 VWTSNVSWSRLTVRSDTGAPSLRQRLLPGLRKSR 288
VW +V+WS + T P++ LL +++SR
Sbjct: 328 VWAHDVAWSLASAAEVTRMPTVTSTLLEAIKESR 361
>At4g01270.1 68417.m00168 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 506
Score = 27.9 bits (59), Expect = 4.3
Identities = 14/44 (31%), Positives = 25/44 (56%)
Frame = +3
Query: 345 LIAKINNVEKQKSRLQSEVEVLIIDLEKANGTARELQKRTEQLE 476
L+AK N + + ++R ++E + +EK REL+ TE+ E
Sbjct: 235 LLAKCNQLGRGEARSSEKLEKALEKIEKLKKRMRELELITEERE 278
>At1g27650.1 68414.m03379 U2 snRNP auxiliary factor small subunit,
putative Strong similarity to gb|Y18349 U2 snRNP
auxiliary factor, small subunit from Oryza sativa. ESTs
gb|AA586295 and gb|AA597332 come from this gene
Length = 296
Score = 27.5 bits (58), Expect = 5.7
Identities = 19/55 (34%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
Frame = +2
Query: 350 RENQQR*KTEVSSAERGRSPH-HRLGEGKRYCSGASEEDRAAGARQHRDQVPSRG 511
R+N +R + + R R +R G GKR S SE G+R R P RG
Sbjct: 211 RDNDRRDPSHREFSHRDRDREFYRHGSGKR-SSERSERQERDGSRGRRQASPKRG 264
>At5g58320.1 68418.m07300 kinase interacting protein-related low
similarity to kinase interacting protein 1 [Petunia
integrifolia] GI:13936326
Length = 490
Score = 27.1 bits (57), Expect = 7.5
Identities = 12/42 (28%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
Frame = +3
Query: 354 KINNVE-KQKSRLQSEVEVLIIDLEKANGTARELQKRTEQLE 476
K+NN + +++ +L+SE+EVL ++ + L ++ +LE
Sbjct: 440 KVNNEKIEEEEKLKSEIEVLTLEKVEKGRCIETLSRKVSELE 481
>At5g27220.1 68418.m03247 protein transport protein-related low
similarity to SP|P25386 Intracellular protein transport
protein USO1 {Saccharomyces cerevisiae}
Length = 1181
Score = 27.1 bits (57), Expect = 7.5
Identities = 16/54 (29%), Positives = 31/54 (57%)
Frame = +3
Query: 354 KINNVEKQKSRLQSEVEVLIIDLEKANGTARELQKRTEQLERVNIEIKSRLEET 515
++ ++ R + EV V++ LEK+ +REL E++ER E+ + L++T
Sbjct: 306 QLEQMDIDLERHRGEVNVVMEHLEKSQTRSREL---AEEIERKRKELTAVLDKT 356
>At4g32770.1 68417.m04662 tocopherol cyclase, chloroplast / vitamin
E deficient 1 (VTE1) / sucrose export defective 1 (SXD1)
identical to SP|Q94FY7 Tocopherol cyclase, chloroplast
precursor (Vitamin E deficient 1) (Sucrose export
defective 1) {Arabidopsis thaliana}
Length = 488
Score = 27.1 bits (57), Expect = 7.5
Identities = 10/17 (58%), Positives = 10/17 (58%)
Frame = -1
Query: 126 AGWPQAESAFSPHPQAC 76
AGWP A F PH Q C
Sbjct: 248 AGWPAAFPVFEPHWQIC 264
>At3g19290.1 68416.m02446 ABA-responsive element-binding protein 2
(AREB2) almost identical (one amino acid) to GB:AAF27182
from (Arabidopsis thaliana); contains Pfam profile
PF00170:bZIP transcription factor; identical to cDNA
abscisic acid responsive elements-binding factor (ABRE)
mRNA, partial cds GI:6739282
Length = 431
Score = 27.1 bits (57), Expect = 7.5
Identities = 18/57 (31%), Positives = 32/57 (56%)
Frame = +3
Query: 345 LIAKINNVEKQKSRLQSEVEVLIIDLEKANGTARELQKRTEQLERVNIEIKSRLEET 515
+I + + ++R Q+ L ++EK T +ELQK+ Q E V ++ K+ L+ET
Sbjct: 358 MIKNRESAARSRARKQAYTLELEAEIEKLKKTNQELQKK--QAEMVEMQ-KNELKET 411
>At2g14680.1 68415.m01651 myosin heavy chain-related contains weak
similarity to Swiss-Prot:P35579 myosin heavy chain,
nonmuscle type A (Cellular myosin heavy chain, type A,
Nonmuscle myosin heavy chain-A, NMMHC-A) [Homo sapiens]
Length = 629
Score = 27.1 bits (57), Expect = 7.5
Identities = 16/55 (29%), Positives = 26/55 (47%)
Frame = +3
Query: 348 IAKINNVEKQKSRLQSEVEVLIIDLEKANGTARELQKRTEQLERVNIEIKSRLEE 512
+AK EKQ Q V + +K+ A + ++ E + + EI+ RLEE
Sbjct: 99 VAKNLEAEKQVRFFQGSVAAAFSERDKSVMEAEKAEENAEMMSQKLSEIEMRLEE 153
>At5g47380.1 68418.m05839 expressed protein contains Pfam profile
PF04784: Protein of unknown function, DUF547
Length = 618
Score = 26.6 bits (56), Expect = 9.9
Identities = 12/37 (32%), Positives = 24/37 (64%), Gaps = 2/37 (5%)
Frame = +3
Query: 132 VEIDLESVRVQLEEESEARLDLERQLVKANGEI--GH 236
+E D+E + ++L++E R+ LER + +A+ + GH
Sbjct: 92 LERDVEQLHLRLQQEKSMRMVLERAMGRASSSLSPGH 128
>At1g13220.2 68414.m01534 nuclear matrix constituent protein-related
similar to nuclear matrix constituent protein 1 (NMCP1)
[Daucus carota] GI:2190187
Length = 1128
Score = 26.6 bits (56), Expect = 9.9
Identities = 14/44 (31%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
Frame = +3
Query: 366 VEKQKSRLQSEVEVLIIDLEKANGTA-RELQKRTEQLERVNIEI 494
++ QK L S++ ++ E+ + +ELQ++ E+LER +EI
Sbjct: 375 IDDQKEVLGSKMLEFELECEEIRKSLDKELQRKIEELERQKVEI 418
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,794,376
Number of Sequences: 28952
Number of extensions: 157133
Number of successful extensions: 722
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 692
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 722
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 937669760
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -