Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30179
         (516 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ435334-1|ABD92649.1|  135|Apis mellifera OBP17 protein.              21   5.7  
AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      21   5.7  
DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II lar...    21   10.0 

>DQ435334-1|ABD92649.1|  135|Apis mellifera OBP17 protein.
          Length = 135

 Score = 21.4 bits (43), Expect = 5.7
 Identities = 7/24 (29%), Positives = 13/24 (54%)
 Frame = -2

Query: 314 SCHTASDIPGNLHTLPGLCLSLLG 243
           S  T  ++   LHT+  +C+  +G
Sbjct: 15  SAMTLDELKSGLHTVQSVCMKEIG 38


>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 21.4 bits (43), Expect = 5.7
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = +3

Query: 189 QRRRARSCSHSKSSFPSTAKQRKTKTRER 275
           +R+R  S   ++S   S A   KTK R +
Sbjct: 215 KRKRKSSTIENESETESNASSTKTKMRRK 243


>DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II large
           subunit protein.
          Length = 296

 Score = 20.6 bits (41), Expect = 10.0
 Identities = 9/24 (37%), Positives = 10/24 (41%)
 Frame = -1

Query: 324 PFSFLSYSFRHSRKSSYAPWSLSF 253
           PF F   +  H  K  Y P S  F
Sbjct: 260 PFGFRKRTLPHFIKDDYGPESRGF 283


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 128,166
Number of Sequences: 438
Number of extensions: 2384
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14354847
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)