Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV30178
(516 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 248 3e-67
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 139 3e-34
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 123 1e-29
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 86 3e-18
SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces po... 73 2e-14
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 49 2e-11
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 63 3e-11
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 54 1e-08
SPBC1683.03c |||membrane transporter|Schizosaccharomyces pombe|c... 27 1.3
SPAC1296.04 |mug65||spore wall assembly protein |Schizosaccharom... 27 2.2
SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces pomb... 26 3.8
SPBC16A3.08c |||nuclear telomere cap complex subunit |Schizosacc... 25 5.1
SPBC18E5.09c |||sequence orphan|Schizosaccharomyces pombe|chr 2|... 25 8.9
SPCC970.03 |||cytochrome b5 reductase |Schizosaccharomyces pombe... 25 8.9
SPAC23H4.13c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual 25 8.9
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 248 bits (608), Expect = 3e-67
Identities = 117/137 (85%), Positives = 126/137 (91%)
Frame = +2
Query: 104 KILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAAASTSLEKSYELPDGQVITI 283
KIL ERGY+F+TTAEREIVRDIKEKLCYVALDFEQE+ TAA S+SLEKSYELPDGQVITI
Sbjct: 191 KILMERGYTFSTTAEREIVRDIKEKLCYVALDFEQELQTAAQSSSLEKSYELPDGQVITI 250
Query: 284 GNERFRCPEALFQPSFLGMESCGIHETVYNSIMKCDVDIRKDLYANTVMSGGTTMYPGIA 463
GNERFR PEALFQPS LG+E+ GIHE YNSIMKCDVDIRKDLY N VMSGGTTMYPGIA
Sbjct: 251 GNERFRAPEALFQPSALGLENAGIHEATYNSIMKCDVDIRKDLYGNVVMSGGTTMYPGIA 310
Query: 464 DRMQKEITALAPSTIKI 514
DRMQKEI ALAPS++K+
Sbjct: 311 DRMQKEIQALAPSSMKV 327
Score = 73.7 bits (173), Expect = 1e-14
Identities = 32/34 (94%), Positives = 34/34 (100%)
Frame = +1
Query: 4 GVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMK 105
GV+HTVPIYEGYALPHAI+RLDLAGRDLTDYLMK
Sbjct: 158 GVTHTVPIYEGYALPHAIMRLDLAGRDLTDYLMK 191
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 139 bits (336), Expect = 3e-34
Identities = 62/129 (48%), Positives = 90/129 (69%)
Frame = +2
Query: 107 ILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAAASTSLEKSYELPDGQVITIG 286
+L +GY+F TA+ E VR++KEKLCYV+ D E + + +T L ++Y LPDG+VI +G
Sbjct: 192 LLLRKGYAFNRTADFETVREMKEKLCYVSYDLELDHKLSEETTVLMRNYTLPDGRVIKVG 251
Query: 287 NERFRCPEALFQPSFLGMESCGIHETVYNSIMKCDVDIRKDLYANTVMSGGTTMYPGIAD 466
+ER+ CPE LFQP +G E G+ E ++++I DVDIRK LY V+SGG++MY G+
Sbjct: 252 SERYECPECLFQPHLVGSEQPGLSEFIFDTIQAADVDIRKYLYRAIVLSGGSSMYAGLPS 311
Query: 467 RMQKEITAL 493
R++KEI L
Sbjct: 312 RLEKEIKQL 320
Score = 46.0 bits (104), Expect = 3e-06
Identities = 21/40 (52%), Positives = 27/40 (67%)
Frame = +1
Query: 4 GVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKDPHREG 123
GV+H VP+YE L H + RLD+AGRD T YL+ R+G
Sbjct: 158 GVTHIVPVYESVVLNHLVGRLDVAGRDATRYLISLLLRKG 197
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 123 bits (297), Expect = 1e-29
Identities = 55/129 (42%), Positives = 82/129 (63%)
Frame = +2
Query: 110 LTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAAASTSLEKSYELPDGQVITIGN 289
L + G+ ++AE+EIVR+IKEK CYVA DF E+ + +Y+LPD Q IT+G
Sbjct: 198 LRKSGHELVSSAEKEIVREIKEKCCYVASDFRSEIESWTEHKPQIHTYQLPDNQTITLGT 257
Query: 290 ERFRCPEALFQPSFLGMESCGIHETVYNSIMKCDVDIRKDLYANTVMSGGTTMYPGIADR 469
E F PE LF P +G E+ G+H ++ SI+ D+D+R LY+N V+SGG+T+ G +R
Sbjct: 258 ECFSAPEVLFNPEMMGSEASGLHIQLFKSILLSDIDLRSTLYSNIVLSGGSTLLRGFGER 317
Query: 470 MQKEITALA 496
E+ A++
Sbjct: 318 FISELRAIS 326
Score = 48.4 bits (110), Expect = 6e-07
Identities = 18/40 (45%), Positives = 30/40 (75%)
Frame = +1
Query: 4 GVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKDPHREG 123
G++H+VPIY+G+++P AI + ++ GRD+TDYL + G
Sbjct: 163 GLTHSVPIYDGFSIPSAIQQEEIGGRDVTDYLQLQLRKSG 202
>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
Arp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 85.8 bits (203), Expect = 3e-18
Identities = 48/132 (36%), Positives = 70/132 (53%), Gaps = 9/132 (6%)
Frame = +2
Query: 128 SFTTTAEREIVRDIKEKLCYVALDFEQEMATAAASTSLEKSYELPDGQVITIGNERFRCP 307
S+ +R ++ + KE + V + A AS+ K +E PDG G ERFR
Sbjct: 243 SYEIFQKRRVIEEWKESVLDV---LDTPFDEAKASSRNPKPFEFPDGVTHKFGQERFRIS 299
Query: 308 EALFQPSFLGMESC---------GIHETVYNSIMKCDVDIRKDLYANTVMSGGTTMYPGI 460
E LF PSF S G+HE VY SI+ CD ++R L N V++GGT++ PG+
Sbjct: 300 EILFNPSFSASRSAETTPPQGSVGLHELVYQSILACDSELRSPLLNNIVVTGGTSLIPGL 359
Query: 461 ADRMQKEITALA 496
++R+Q E+ LA
Sbjct: 360 SERLQAEVQRLA 371
>SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 401
Score = 73.3 bits (172), Expect = 2e-14
Identities = 49/157 (31%), Positives = 76/157 (48%), Gaps = 20/157 (12%)
Frame = +2
Query: 104 KILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAAAS--TSLEKSYELPD---- 265
++++ R Y+ E IV +IKE +CYV+ +F+++M + LE Y LPD
Sbjct: 199 EVISYRKYNMME--ETYIVNEIKESVCYVSQNFKEDMEICHEKPRSKLEICYALPDYSTG 256
Query: 266 --------------GQVITIGNERFRCPEALFQPSFLGMESCGIHETVYNSIMKCDVDIR 403
QV+ + NERF PE LF PS + + GI E V S+ +I+
Sbjct: 257 KHGYIVRDINQKIEQQVLNLSNERFMIPELLFSPSDIEIREAGIPEAVMQSVTHFPENIQ 316
Query: 404 KDLYANTVMSGGTTMYPGIADRMQKEITALAPSTIKI 514
L N V GG +PG R+ E+ +LAP+ ++
Sbjct: 317 AMLLENVVTIGGNCKFPGFHKRLSSELRSLAPANWEV 353
Score = 27.1 bits (57), Expect = 1.7
Identities = 10/30 (33%), Positives = 19/30 (63%)
Frame = +1
Query: 10 SHTVPIYEGYALPHAILRLDLAGRDLTDYL 99
+H +P+ + A+ R+D+ G+ LT+YL
Sbjct: 168 THIIPVIDFSVQEQAVKRVDVGGKLLTNYL 197
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 48.8 bits (111), Expect(2) = 2e-11
Identities = 24/56 (42%), Positives = 35/56 (62%), Gaps = 1/56 (1%)
Frame = +2
Query: 350 GIHETVYNSIMKCDVDIRKDLYANTVMSGGTTMYPGIADRMQKEITALAP-STIKI 514
GI + N I +CDVDIR L N ++ GGT++ G + R+Q E++ L P S +KI
Sbjct: 326 GIPQLFQNCISECDVDIRASLLNNVIVCGGTSLMQGFSLRLQNELSKLYPGSRLKI 381
Score = 34.3 bits (75), Expect(2) = 2e-11
Identities = 14/35 (40%), Positives = 21/35 (60%)
Frame = +2
Query: 221 AAASTSLEKSYELPDGQVITIGNERFRCPEALFQP 325
++ +T E +E PDG + G ER++ PE LF P
Sbjct: 254 SSETTIAESEFEFPDGSRMMFGAERYQIPEHLFVP 288
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 62.9 bits (146), Expect = 3e-11
Identities = 38/119 (31%), Positives = 58/119 (48%), Gaps = 5/119 (4%)
Frame = +2
Query: 167 IKEKLCYVALDFEQEMATAAASTS--LEKSYELPDGQVITI--GNERFRCPEALFQPSFL 334
IKE+ CYV D +E + L+ + E G TI G ERF PE F P
Sbjct: 240 IKEECCYVCPDIVKEFSRFDREPDRYLKYASESITGHSTTIDVGFERFLAPEIFFNPEIA 299
Query: 335 GMESCG-IHETVYNSIMKCDVDIRKDLYANTVMSGGTTMYPGIADRMQKEITALAPSTI 508
+ + E V N + +D+RK LY N V+SGG+T++ +R+Q+++ + I
Sbjct: 300 SSDFLTPLPELVDNVVQSSPIDVRKGLYKNIVLSGGSTLFKNFGNRLQRDLKRIVDERI 358
Score = 36.7 bits (81), Expect = 0.002
Identities = 14/32 (43%), Positives = 23/32 (71%)
Frame = +1
Query: 4 GVSHTVPIYEGYALPHAILRLDLAGRDLTDYL 99
GV+H +P+ EGY + +I + LAGRD+T ++
Sbjct: 189 GVTHIIPVAEGYVIGSSIKTMPLAGRDVTYFV 220
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 54.0 bits (124), Expect = 1e-08
Identities = 21/70 (30%), Positives = 45/70 (64%)
Frame = +2
Query: 290 ERFRCPEALFQPSFLGMESCGIHETVYNSIMKCDVDIRKDLYANTVMSGGTTMYPGIADR 469
E+ R PE +F PS +G++ GI E + + + + ++ ++ L +N +++GG PG+ R
Sbjct: 594 EQIRVPEVIFSPSIVGIDQAGILEIMRSILQRHSLEEQQKLVSNVLITGGLGSLPGMETR 653
Query: 470 MQKEITALAP 499
+++E+T++ P
Sbjct: 654 IKRELTSIMP 663
>SPBC1683.03c |||membrane transporter|Schizosaccharomyces pombe|chr
2|||Manual
Length = 519
Score = 27.5 bits (58), Expect = 1.3
Identities = 12/30 (40%), Positives = 21/30 (70%), Gaps = 2/30 (6%)
Frame = -1
Query: 120 LSVRIFHEVVGQ--VATSQVQTEDGVGQSV 37
+S+ +FHE+V T+Q+ T+ G+GQS+
Sbjct: 37 ISMSLFHEIVFVFIACTAQLMTQAGLGQSI 66
>SPAC1296.04 |mug65||spore wall assembly protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 248
Score = 26.6 bits (56), Expect = 2.2
Identities = 9/16 (56%), Positives = 9/16 (56%)
Frame = +2
Query: 26 STKVTLCPTPSSVWTW 73
STK CP PS W W
Sbjct: 52 STKTATCPDPSWEWAW 67
>SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 25.8 bits (54), Expect = 3.8
Identities = 9/27 (33%), Positives = 18/27 (66%)
Frame = +2
Query: 404 KDLYANTVMSGGTTMYPGIADRMQKEI 484
K+LY++ ++ GG +PG A +++ I
Sbjct: 527 KNLYSSILIVGGAGQFPGFAHLLEERI 553
>SPBC16A3.08c |||nuclear telomere cap complex subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 284
Score = 25.4 bits (53), Expect = 5.1
Identities = 15/43 (34%), Positives = 20/43 (46%)
Frame = +1
Query: 355 PRDRVQLHHEVRRRHP*GPVRQHRHVRWYHHVPRYRRQDAEGD 483
PR+ V R+R P P + R V PR RRQ +G+
Sbjct: 41 PRELVAQSTTSRKRDPNQPTPRERTVNKKADQPRRRRQAPQGN 83
>SPBC18E5.09c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 128
Score = 24.6 bits (51), Expect = 8.9
Identities = 13/43 (30%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Frame = +2
Query: 182 CYVALDFEQEMATAAASTSLEKSYELPDGQVITIGNE-RFRCP 307
CYV+ +E + + SL SY +PD + I + R+ P
Sbjct: 39 CYVSRPLTKERSCSHPYISLGSSYGIPDAENIEYPRDARYHSP 81
>SPCC970.03 |||cytochrome b5 reductase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 301
Score = 24.6 bits (51), Expect = 8.9
Identities = 10/16 (62%), Positives = 11/16 (68%), Gaps = 1/16 (6%)
Frame = +2
Query: 11 PTPYPSTKVTLC-PTP 55
P P P TKV +C PTP
Sbjct: 256 PAPSPETKVLICGPTP 271
>SPAC23H4.13c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
Length = 184
Score = 24.6 bits (51), Expect = 8.9
Identities = 16/36 (44%), Positives = 19/36 (52%)
Frame = +2
Query: 167 IKEKLCYVALDFEQEMATAAASTSLEKSYELPDGQV 274
IKEKL VA EQE A +SL+ S + G V
Sbjct: 111 IKEKLRRVANITEQEQQCIPAESSLDLSIQAMKGVV 146
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,972,293
Number of Sequences: 5004
Number of extensions: 39368
Number of successful extensions: 168
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 153
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 165
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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