Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV30178
(516 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_23734| Best HMM Match : No HMM Matches (HMM E-Value=.) 269 8e-73
SB_23733| Best HMM Match : No HMM Matches (HMM E-Value=.) 268 2e-72
SB_56| Best HMM Match : Actin (HMM E-Value=0) 268 2e-72
SB_56628| Best HMM Match : Actin (HMM E-Value=0) 268 2e-72
SB_7190| Best HMM Match : No HMM Matches (HMM E-Value=.) 266 1e-71
SB_7187| Best HMM Match : No HMM Matches (HMM E-Value=.) 262 9e-71
SB_13344| Best HMM Match : Actin (HMM E-Value=1.5e-07) 163 8e-41
SB_54| Best HMM Match : Actin (HMM E-Value=0) 142 2e-34
SB_19204| Best HMM Match : No HMM Matches (HMM E-Value=.) 138 3e-33
SB_3885| Best HMM Match : Actin (HMM E-Value=0.77) 74 8e-14
SB_49385| Best HMM Match : Actin (HMM E-Value=0.00022) 69 3e-12
SB_26136| Best HMM Match : Actin (HMM E-Value=7.2e-10) 60 8e-10
SB_27656| Best HMM Match : Actin (HMM E-Value=4.79999e-40) 59 2e-09
SB_6996| Best HMM Match : Actin (HMM E-Value=1.7e-07) 45 3e-05
SB_22343| Best HMM Match : No HMM Matches (HMM E-Value=.) 42 3e-04
SB_30721| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.18
SB_31697| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 0.98
SB_21715| Best HMM Match : Serglycin (HMM E-Value=0.054) 29 3.0
SB_11627| Best HMM Match : RNA_pol_Rpb2_1 (HMM E-Value=2.6) 29 3.0
SB_38754| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.0
SB_430| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.0
SB_3433| Best HMM Match : Actin (HMM E-Value=0.00011) 28 4.0
SB_56863| Best HMM Match : F5_F8_type_C (HMM E-Value=0) 28 5.3
SB_54269| Best HMM Match : M (HMM E-Value=8.1e-20) 28 5.3
SB_47898| Best HMM Match : Extensin_2 (HMM E-Value=0.88) 27 6.9
SB_12670| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.9
SB_39784| Best HMM Match : WH2 (HMM E-Value=2e-05) 27 9.2
SB_10535| Best HMM Match : Extensin_2 (HMM E-Value=0.013) 27 9.2
SB_44956| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.2
SB_6273| Best HMM Match : MAM (HMM E-Value=0) 27 9.2
>SB_23734| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 338
Score = 269 bits (660), Expect = 8e-73
Identities = 127/137 (92%), Positives = 133/137 (97%)
Frame = +2
Query: 104 KILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAAASTSLEKSYELPDGQVITI 283
KILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEM TAA+S+SLEKSYELPDGQVITI
Sbjct: 154 KILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMQTAASSSSLEKSYELPDGQVITI 213
Query: 284 GNERFRCPEALFQPSFLGMESCGIHETVYNSIMKCDVDIRKDLYANTVMSGGTTMYPGIA 463
GNERFRCPEA+FQPSFLGMES GIHET YNSIMKCDVDIRKDLYANTV+SGGTTMYPGIA
Sbjct: 214 GNERFRCPEAMFQPSFLGMESAGIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMYPGIA 273
Query: 464 DRMQKEITALAPSTIKI 514
DRMQKEI+ALAP T+KI
Sbjct: 274 DRMQKEISALAPPTMKI 290
Score = 73.7 bits (173), Expect = 8e-14
Identities = 32/34 (94%), Positives = 34/34 (100%)
Frame = +1
Query: 4 GVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMK 105
GV+HTVPIYEGYALPHAI+RLDLAGRDLTDYLMK
Sbjct: 121 GVTHTVPIYEGYALPHAIIRLDLAGRDLTDYLMK 154
>SB_23733| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 376
Score = 268 bits (657), Expect = 2e-72
Identities = 126/137 (91%), Positives = 133/137 (97%)
Frame = +2
Query: 104 KILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAAASTSLEKSYELPDGQVITI 283
KILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEM TAA+S+SLEKSYELPDGQVITI
Sbjct: 192 KILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMETAASSSSLEKSYELPDGQVITI 251
Query: 284 GNERFRCPEALFQPSFLGMESCGIHETVYNSIMKCDVDIRKDLYANTVMSGGTTMYPGIA 463
GNERFRCPEA+FQPSFLGMES GIHET YNSIMKCDVDIRKDLYANTV+SGG+TMYPGIA
Sbjct: 252 GNERFRCPEAMFQPSFLGMESAGIHETTYNSIMKCDVDIRKDLYANTVLSGGSTMYPGIA 311
Query: 464 DRMQKEITALAPSTIKI 514
DRMQKEIT+LAP T+KI
Sbjct: 312 DRMQKEITSLAPPTMKI 328
Score = 73.7 bits (173), Expect = 8e-14
Identities = 32/34 (94%), Positives = 34/34 (100%)
Frame = +1
Query: 4 GVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMK 105
GV+HTVPIYEGYALPHAI+RLDLAGRDLTDYLMK
Sbjct: 159 GVTHTVPIYEGYALPHAIIRLDLAGRDLTDYLMK 192
>SB_56| Best HMM Match : Actin (HMM E-Value=0)
Length = 375
Score = 268 bits (657), Expect = 2e-72
Identities = 126/137 (91%), Positives = 133/137 (97%)
Frame = +2
Query: 104 KILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAAASTSLEKSYELPDGQVITI 283
KILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEM TAA+S+SLEKSYELPDGQVITI
Sbjct: 191 KILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMQTAASSSSLEKSYELPDGQVITI 250
Query: 284 GNERFRCPEALFQPSFLGMESCGIHETVYNSIMKCDVDIRKDLYANTVMSGGTTMYPGIA 463
GNERFRCPEA+FQPSFLGMES GIHET YNSIMKCDVDIRKDLYANTV+SGG+TMYPGIA
Sbjct: 251 GNERFRCPEAMFQPSFLGMESAGIHETTYNSIMKCDVDIRKDLYANTVLSGGSTMYPGIA 310
Query: 464 DRMQKEITALAPSTIKI 514
DRMQKEIT+LAP T+KI
Sbjct: 311 DRMQKEITSLAPPTMKI 327
Score = 74.5 bits (175), Expect = 5e-14
Identities = 33/34 (97%), Positives = 34/34 (100%)
Frame = +1
Query: 4 GVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMK 105
GV+HTVPIYEGYALPHAILRLDLAGRDLTDYLMK
Sbjct: 158 GVTHTVPIYEGYALPHAILRLDLAGRDLTDYLMK 191
>SB_56628| Best HMM Match : Actin (HMM E-Value=0)
Length = 376
Score = 268 bits (657), Expect = 2e-72
Identities = 126/137 (91%), Positives = 133/137 (97%)
Frame = +2
Query: 104 KILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAAASTSLEKSYELPDGQVITI 283
KILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEM TAA+S+SLEKSYELPDGQVITI
Sbjct: 192 KILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMTTAASSSSLEKSYELPDGQVITI 251
Query: 284 GNERFRCPEALFQPSFLGMESCGIHETVYNSIMKCDVDIRKDLYANTVMSGGTTMYPGIA 463
GNERFRCPEA+FQPSFLGMES GIHET YNSIMKCDVDIRKDLYANTV+SGG+TMYPGIA
Sbjct: 252 GNERFRCPEAMFQPSFLGMESAGIHETTYNSIMKCDVDIRKDLYANTVLSGGSTMYPGIA 311
Query: 464 DRMQKEITALAPSTIKI 514
DRMQKEI+ALAP T+KI
Sbjct: 312 DRMQKEISALAPPTMKI 328
Score = 74.5 bits (175), Expect = 5e-14
Identities = 33/34 (97%), Positives = 34/34 (100%)
Frame = +1
Query: 4 GVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMK 105
GV+HTVPIYEGYALPHAILRLDLAGRDLTDYLMK
Sbjct: 159 GVTHTVPIYEGYALPHAILRLDLAGRDLTDYLMK 192
>SB_7190| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 375
Score = 266 bits (651), Expect = 1e-71
Identities = 126/137 (91%), Positives = 133/137 (97%)
Frame = +2
Query: 104 KILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAAASTSLEKSYELPDGQVITI 283
KILTERGYSFTTTAEREIVRDIKEKL YVALDFEQEMATAAAS+SLEKSYELPDGQVITI
Sbjct: 191 KILTERGYSFTTTAEREIVRDIKEKLAYVALDFEQEMATAAASSSLEKSYELPDGQVITI 250
Query: 284 GNERFRCPEALFQPSFLGMESCGIHETVYNSIMKCDVDIRKDLYANTVMSGGTTMYPGIA 463
GNERFRCPEA+FQPSFLGMES GIHET YNSIMKCDVDIRKDLYANTV+SGG+TM+PGIA
Sbjct: 251 GNERFRCPEAMFQPSFLGMESAGIHETTYNSIMKCDVDIRKDLYANTVLSGGSTMFPGIA 310
Query: 464 DRMQKEITALAPSTIKI 514
DRMQKEI+ALAP T+KI
Sbjct: 311 DRMQKEISALAPPTMKI 327
Score = 74.5 bits (175), Expect = 5e-14
Identities = 33/34 (97%), Positives = 34/34 (100%)
Frame = +1
Query: 4 GVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMK 105
GV+HTVPIYEGYALPHAILRLDLAGRDLTDYLMK
Sbjct: 158 GVTHTVPIYEGYALPHAILRLDLAGRDLTDYLMK 191
>SB_7187| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 349
Score = 262 bits (643), Expect = 9e-71
Identities = 124/136 (91%), Positives = 130/136 (95%)
Frame = +2
Query: 107 ILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAAASTSLEKSYELPDGQVITIG 286
I ERGYSFTTTAEREIVRDIKEKLCYVALDFEQEM TAA+S+S+EKSYELPDGQVITIG
Sbjct: 166 IYEERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMQTAASSSSIEKSYELPDGQVITIG 225
Query: 287 NERFRCPEALFQPSFLGMESCGIHETVYNSIMKCDVDIRKDLYANTVMSGGTTMYPGIAD 466
NERFRCPEAL QPSFLGMES GIHET YNSIMKCDVDIRKDLYANTVMSGGTTMYPG+AD
Sbjct: 226 NERFRCPEALLQPSFLGMESSGIHETTYNSIMKCDVDIRKDLYANTVMSGGTTMYPGLAD 285
Query: 467 RMQKEITALAPSTIKI 514
RMQKEI+ALAPST+KI
Sbjct: 286 RMQKEISALAPSTMKI 301
>SB_13344| Best HMM Match : Actin (HMM E-Value=1.5e-07)
Length = 149
Score = 163 bits (396), Expect = 8e-41
Identities = 73/97 (75%), Positives = 87/97 (89%)
Frame = +2
Query: 224 AASTSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMESCGIHETVYNSIMKCDVDIR 403
A S LEK+YELPDGQVI+IGNERFRCPEA+FQP+FLGME+ GIHE +YN IMKCDVDIR
Sbjct: 5 ANSPILEKTYELPDGQVISIGNERFRCPEAMFQPAFLGMEAPGIHEAIYNCIMKCDVDIR 64
Query: 404 KDLYANTVMSGGTTMYPGIADRMQKEITALAPSTIKI 514
KDLY+N V+SGG+TM+PGIADRMQKEI LA +++K+
Sbjct: 65 KDLYSNCVLSGGSTMFPGIADRMQKEIAMLANASMKV 101
>SB_54| Best HMM Match : Actin (HMM E-Value=0)
Length = 2486
Score = 142 bits (343), Expect = 2e-34
Identities = 62/111 (55%), Positives = 84/111 (75%)
Frame = +2
Query: 104 KILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAAASTSLEKSYELPDGQVITI 283
+++TERGYSF +TAE++I+RD+KE LCY A+D+E+E+ A S E Y LPDGQ I I
Sbjct: 2236 RLVTERGYSFQSTAEQQIIRDLKETLCYCAMDYERELKEAETSDDCEAPYMLPDGQSIRI 2295
Query: 284 GNERFRCPEALFQPSFLGMESCGIHETVYNSIMKCDVDIRKDLYANTVMSG 436
G+ERFR E LFQPS LG + GIHE+++ SI KCD+D+R +L+ N V+SG
Sbjct: 2296 GSERFRAAEPLFQPSLLGRDIDGIHESIFKSIKKCDIDLRAELFHNIVLSG 2346
Score = 60.1 bits (139), Expect = 1e-09
Identities = 25/34 (73%), Positives = 29/34 (85%)
Frame = +1
Query: 4 GVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMK 105
GVSHTVP+Y+GY LPHA R+DLAGRDLT YL +
Sbjct: 2203 GVSHTVPVYDGYWLPHATQRIDLAGRDLTHYLQR 2236
>SB_19204| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 411
Score = 138 bits (334), Expect = 3e-33
Identities = 61/130 (46%), Positives = 87/130 (66%)
Frame = +2
Query: 104 KILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAAASTSLEKSYELPDGQVITI 283
K++ RGY+F TA+ E VR +KEKLCYV + EQE A +T L + Y LPDG+V+ +
Sbjct: 195 KLMLLRGYAFNHTADFETVRMMKEKLCYVGYNIEQEQKLALETTVLVEQYTLPDGRVVKL 254
Query: 284 GNERFRCPEALFQPSFLGMESCGIHETVYNSIMKCDVDIRKDLYANTVMSGGTTMYPGIA 463
ERF PEALFQP + +E G+ E ++N+I D+D R + Y + V+SGG+TMYPG+
Sbjct: 255 SGERFEAPEALFQPHLINVEGVGVAELLFNTIQAADIDTRSEFYKHIVLSGGSTMYPGLP 314
Query: 464 DRMQKEITAL 493
R+++EI L
Sbjct: 315 SRLEREIKQL 324
Score = 56.0 bits (129), Expect = 2e-08
Identities = 24/45 (53%), Positives = 31/45 (68%)
Frame = +1
Query: 4 GVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKDPHREGLLVHH 138
GV+H P+YEG+ALPH RLD+AGRD+T YL+K G +H
Sbjct: 162 GVTHICPVYEGFALPHLTRRLDIAGRDITKYLIKLMLLRGYAFNH 206
>SB_3885| Best HMM Match : Actin (HMM E-Value=0.77)
Length = 152
Score = 73.7 bits (173), Expect = 8e-14
Identities = 33/34 (97%), Positives = 33/34 (97%)
Frame = +1
Query: 4 GVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMK 105
GVSH VPIYEGYALPHAILRLDLAGRDLTDYLMK
Sbjct: 37 GVSHNVPIYEGYALPHAILRLDLAGRDLTDYLMK 70
Score = 73.3 bits (172), Expect = 1e-13
Identities = 33/37 (89%), Positives = 36/37 (97%)
Frame = +2
Query: 104 KILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEM 214
K++TERGYSFTTTAEREIVRDIKEKLCYVALDF QE+
Sbjct: 70 KLMTERGYSFTTTAEREIVRDIKEKLCYVALDFYQEI 106
>SB_49385| Best HMM Match : Actin (HMM E-Value=0.00022)
Length = 921
Score = 68.5 bits (160), Expect = 3e-12
Identities = 32/73 (43%), Positives = 48/73 (65%)
Frame = +2
Query: 116 ERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAAASTSLEKSYELPDGQVITIGNER 295
+RG++FT+++ +IV DIKEK+CY++ D +E+ + L K Y LPDGQ+I+IG E
Sbjct: 826 QRGHNFTSSSGWQIVNDIKEKICYLSKDHLKEVHNYKTNEGLTKFYTLPDGQMISIGYEC 885
Query: 296 FRCPEALFQPSFL 334
E LF+P L
Sbjct: 886 ISSMEPLFRPDLL 898
>SB_26136| Best HMM Match : Actin (HMM E-Value=7.2e-10)
Length = 543
Score = 60.5 bits (140), Expect = 8e-10
Identities = 28/81 (34%), Positives = 45/81 (55%), Gaps = 1/81 (1%)
Frame = +2
Query: 275 ITIGNERFRCPEALFQPSFLGME-SCGIHETVYNSIMKCDVDIRKDLYANTVMSGGTTMY 451
+ + ERF PE F P F + + + E V N I C +D+R+ LY N V+SGG+TM+
Sbjct: 196 VDVAYERFLGPEIFFHPEFSNPDFTTPLSEVVDNVIQNCPIDVRRPLYKNIVLSGGSTMF 255
Query: 452 PGIADRMQKEITALAPSTIKI 514
R+Q++I + +K+
Sbjct: 256 RDFGRRLQRDIKRTVDARLKM 276
Score = 37.1 bits (82), Expect = 0.009
Identities = 13/34 (38%), Positives = 23/34 (67%)
Frame = +1
Query: 4 GVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMK 105
GV+H +P+ EGY + I + +AGRD+T ++ +
Sbjct: 71 GVTHVIPVAEGYVIGSCIKHIPIAGRDITFFVQQ 104
>SB_27656| Best HMM Match : Actin (HMM E-Value=4.79999e-40)
Length = 367
Score = 59.3 bits (137), Expect = 2e-09
Identities = 25/44 (56%), Positives = 34/44 (77%)
Frame = +1
Query: 4 GVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKDPHREGLLVH 135
GVSH+VPIYEG+A+PH+I+R D+AGRD++ YL +EG H
Sbjct: 184 GVSHSVPIYEGFAMPHSIMRTDIAGRDVSRYLRLLLRKEGHCFH 227
Score = 38.3 bits (85), Expect = 0.004
Identities = 16/35 (45%), Positives = 26/35 (74%)
Frame = +2
Query: 353 IHETVYNSIMKCDVDIRKDLYANTVMSGGTTMYPG 457
I E + +I K D+D+R+ LY+N V+SGG+T++ G
Sbjct: 257 IIEVLAFAIQKSDLDLRRVLYSNIVLSGGSTLFKG 291
>SB_6996| Best HMM Match : Actin (HMM E-Value=1.7e-07)
Length = 240
Score = 45.2 bits (102), Expect = 3e-05
Identities = 16/60 (26%), Positives = 36/60 (60%)
Frame = +2
Query: 335 GMESCGIHETVYNSIMKCDVDIRKDLYANTVMSGGTTMYPGIADRMQKEITALAPSTIKI 514
G + G+ + V S+ D+DIR L+ + +++GG T+ G +R+ +E+ + P ++++
Sbjct: 146 GSTAMGVTQVVTTSVGMTDIDIRAGLFNSVIVTGGNTLLQGFVERLNRELVSKTPPSMRL 205
Score = 28.7 bits (61), Expect = 3.0
Identities = 12/24 (50%), Positives = 17/24 (70%)
Frame = +1
Query: 19 VPIYEGYALPHAILRLDLAGRDLT 90
VP+++GY L AI+R LAG +T
Sbjct: 96 VPVHDGYVLQQAIVRSPLAGDFIT 119
>SB_22343| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 245
Score = 41.9 bits (94), Expect = 3e-04
Identities = 20/54 (37%), Positives = 29/54 (53%)
Frame = +2
Query: 341 ESCGIHETVYNSIMKCDVDIRKDLYANTVMSGGTTMYPGIADRMQKEITALAPS 502
E + + +S++ C +D RK L N V+ GGT M PG R+ +EI L S
Sbjct: 54 EEKSLATALLDSLLLCPIDTRKTLAENIVLIGGTAMTPGFKHRLMQEIYLLLQS 107
>SB_30721| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 40
Score = 32.7 bits (71), Expect = 0.18
Identities = 13/21 (61%), Positives = 16/21 (76%)
Frame = +2
Query: 305 PEALFQPSFLGMESCGIHETV 367
PE +FQPS LG+E GI ET+
Sbjct: 3 PEIIFQPSMLGLEQAGITETM 23
>SB_31697| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 518
Score = 30.3 bits (65), Expect = 0.98
Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Frame = +3
Query: 45 APRHPPSGLGWSRLDRLPHERSSPRGV-TRSPPPLRGK 155
+P+ PS WSR +SP G T+SPPP+ K
Sbjct: 461 SPKTTPSKPSWSRPTPAASASTSPSGTKTKSPPPVMAK 498
>SB_21715| Best HMM Match : Serglycin (HMM E-Value=0.054)
Length = 1079
Score = 28.7 bits (61), Expect = 3.0
Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
Frame = +1
Query: 349 RHPRDRVQLHHEVRRRHP*GPVRQH--RHVRWYHHVPRYRRQDAE 477
R P+DR + HH RRRH R+H H R H ++ DA+
Sbjct: 830 RPPQDRHRRHHH-RRRHHNNKHRKHSREHSRRRHQRKHHKGNDAQ 873
Score = 27.9 bits (59), Expect = 5.3
Identities = 17/64 (26%), Positives = 31/64 (48%), Gaps = 2/64 (3%)
Frame = +1
Query: 325 FLPGYGIVRHP-RDRVQLHHEV-RRRHP*GPVRQHRHVRWYHHVPRYRRQDAEGDHRPRA 498
F+ G G++ H + Q+ E R + G +HRH R +HH ++ R+ + + A
Sbjct: 894 FVNGGGMMEHELQSDSQISQETGARENDPGKKHKHRHRRHHHHRRQHNRKIKKHRRKHSA 953
Query: 499 LDHQ 510
H+
Sbjct: 954 RKHE 957
>SB_11627| Best HMM Match : RNA_pol_Rpb2_1 (HMM E-Value=2.6)
Length = 496
Score = 28.7 bits (61), Expect = 3.0
Identities = 20/46 (43%), Positives = 24/46 (52%), Gaps = 3/46 (6%)
Frame = +3
Query: 21 THLRRLRSAPRHPPSGLGW--SRLDRLP-HERSSPRGVTRSPPPLR 149
+H R S PR+PPS L + S L LP H R P + P PLR
Sbjct: 386 SHSRYPSSHPRYPPSHLRYPPSSLRYLPSHLRYPPPPLRYPPSPLR 431
>SB_38754| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 205
Score = 28.3 bits (60), Expect = 4.0
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = +2
Query: 419 NTVMSGGTTMYPGIADRMQKEITALAP 499
N ++GG TMY R+++E+ A+ P
Sbjct: 132 NVFVTGGNTMYNNFMARLERELLAIRP 158
>SB_430| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2202
Score = 28.3 bits (60), Expect = 4.0
Identities = 18/69 (26%), Positives = 27/69 (39%)
Frame = +1
Query: 304 SRGSLPAFLPGYGIVRHPRDRVQLHHEVRRRHP*GPVRQHRHVRWYHHVPRYRRQDAEGD 483
+R ++P LPG H R R HH ++H ++ HH Q +
Sbjct: 930 ARPNMPGTLPGNYPESHKRHRHSHHHH------------YQHYQYNHHHDHQSHQHHDSH 977
Query: 484 HRPRALDHQ 510
H LDH+
Sbjct: 978 HHREVLDHK 986
>SB_3433| Best HMM Match : Actin (HMM E-Value=0.00011)
Length = 580
Score = 28.3 bits (60), Expect = 4.0
Identities = 13/43 (30%), Positives = 22/43 (51%), Gaps = 3/43 (6%)
Frame = +2
Query: 146 EREIVRDIKEKLCYVALDFEQEMATA---AASTSLEKSYELPD 265
E ++ +KE CYV+ F ++M A ++ + Y LPD
Sbjct: 392 ETFVINQVKEDTCYVSSQFYKDMEIARQRGKENTIVREYVLPD 434
>SB_56863| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
Length = 4248
Score = 27.9 bits (59), Expect = 5.3
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = +3
Query: 60 PSGLGWSRLDRLPHERSSPRGVTR 131
PSGL W L RL H+ + G TR
Sbjct: 1490 PSGLKWLELFRLEHKETKENGWTR 1513
>SB_54269| Best HMM Match : M (HMM E-Value=8.1e-20)
Length = 3489
Score = 27.9 bits (59), Expect = 5.3
Identities = 15/47 (31%), Positives = 24/47 (51%)
Frame = +2
Query: 170 KEKLCYVALDFEQEMATAAASTSLEKSYELPDGQVITIGNERFRCPE 310
+EK+ L+ E E A + LEK +L + +G+ER RC +
Sbjct: 2983 REKIVTSDLESELETERALQANELEKQNKLLEKLSADLGHERSRCED 3029
>SB_47898| Best HMM Match : Extensin_2 (HMM E-Value=0.88)
Length = 490
Score = 27.5 bits (58), Expect = 6.9
Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 4/37 (10%)
Frame = +1
Query: 379 HEVRRRHP*GPVRQHRHVRWYHHVP----RYRRQDAE 477
H R+H P R HR+ R + +P RY R+DA+
Sbjct: 307 HRYTRKHAKIPTRIHRYTRKHAKIPTRIHRYTRKDAK 343
Score = 27.1 bits (57), Expect = 9.2
Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 5/61 (8%)
Frame = +1
Query: 310 GSLPAFLP-GYGIVRHPRDRVQLHHEVRRRHP*GPVRQHRHVRWYHHVP----RYRRQDA 474
G++ +LP GI + + + H R+H P R HR+ R + +P RY R+ A
Sbjct: 185 GNMQRYLPESIGIPGNMQRYLTRIHRYTRKHAKIPTRIHRYTRKHAKIPTRIHRYTRKHA 244
Query: 475 E 477
+
Sbjct: 245 K 245
>SB_12670| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1272
Score = 27.5 bits (58), Expect = 6.9
Identities = 19/50 (38%), Positives = 23/50 (46%)
Frame = +1
Query: 355 PRDRVQLHHEVRRRHP*GPVRQHRHVRWYHHVPRYRRQDAEGDHRPRALD 504
PRDR + E RRR P R+ R + Y PR RR+ R R D
Sbjct: 854 PRDRRRRSPEHRRRREASPPRRDR--KRYDSPPRRRRRSPSPPPRRRRRD 901
>SB_39784| Best HMM Match : WH2 (HMM E-Value=2e-05)
Length = 480
Score = 27.1 bits (57), Expect = 9.2
Identities = 17/44 (38%), Positives = 19/44 (43%), Gaps = 7/44 (15%)
Frame = +3
Query: 42 SAPRHPPSGLGWSRLDRLPHERSS-------PRGVTRSPPPLRG 152
S P PP G G S+ P S P G R PPP+RG
Sbjct: 213 SGPPPPPPGRGPSQRSLAPPPTGSSRPLPAPPPGENRPPPPMRG 256
>SB_10535| Best HMM Match : Extensin_2 (HMM E-Value=0.013)
Length = 392
Score = 27.1 bits (57), Expect = 9.2
Identities = 17/44 (38%), Positives = 19/44 (43%), Gaps = 7/44 (15%)
Frame = +3
Query: 42 SAPRHPPSGLGWSRLDRLPHERSS-------PRGVTRSPPPLRG 152
S P PP G G S+ P S P G R PPP+RG
Sbjct: 125 SGPPPPPPGRGPSQRSLAPPPTGSSRPLPAPPPGENRPPPPMRG 168
>SB_44956| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 736
Score = 27.1 bits (57), Expect = 9.2
Identities = 13/50 (26%), Positives = 20/50 (40%)
Frame = +1
Query: 337 YGIVRHPRDRVQLHHEVRRRHP*GPVRQHRHVRWYHHVPRYRRQDAEGDH 486
Y +++PR R HH +H + H H +HH + Q H
Sbjct: 247 YHKLKNPRHRYHHHHHHHHQH--NHHQHHHHHHHHHHNHHHHHQQHHHHH 294
>SB_6273| Best HMM Match : MAM (HMM E-Value=0)
Length = 4272
Score = 27.1 bits (57), Expect = 9.2
Identities = 9/19 (47%), Positives = 13/19 (68%)
Frame = +2
Query: 11 PTPYPSTKVTLCPTPSSVW 67
PTP+P+T V +P S+W
Sbjct: 1373 PTPFPTTPVPPTTSPPSIW 1391
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,966,175
Number of Sequences: 59808
Number of extensions: 343274
Number of successful extensions: 1101
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 954
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1090
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1148326654
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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