Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV30178
(516 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g53750.1 68416.m05938 actin 3 (ACT3) identical to SP|P53493 A... 248 2e-66
At2g37620.1 68415.m04615 actin 1 (ACT1) identical to SP|P10671 A... 248 2e-66
At3g12110.1 68416.m01507 actin 11 (ACT11) identical to SP|P53496... 244 2e-65
At5g09810.1 68418.m01135 actin 7 (ACT7) / actin 2 identical to S... 240 5e-64
At3g18780.2 68416.m02386 actin 2 (ACT2) identical to SP|Q96292 A... 238 1e-63
At3g18780.1 68416.m02385 actin 2 (ACT2) identical to SP|Q96292 A... 238 1e-63
At1g49240.1 68414.m05520 actin 8 (ACT8) identical to SP|Q96293 A... 238 1e-63
At5g59370.1 68418.m07440 actin 4 (ACT4) identical to SP|P53494 A... 235 1e-62
At3g46520.1 68416.m05050 actin 12 (ACT12) identical to SP|P53497... 234 2e-62
At2g42100.1 68415.m05205 actin, putative very strong similarity ... 227 3e-60
At2g42170.1 68415.m05219 actin, putative similar to actin 2 [Ara... 196 6e-51
At2g42090.1 68415.m05204 actin, putative similar to SP|P53496 Ac... 192 1e-49
At3g27000.1 68416.m03378 actin-related protein 2 (ARP2) nearly i... 136 1e-32
At1g18450.1 68414.m02302 actin-related protein 4 (ARP4) neary id... 85 2e-17
At3g60830.1 68416.m06805 actin-related protein 7 (ARP7) identica... 79 2e-15
At5g56180.1 68418.m07008 actin-related protein, putative (ARP8) ... 76 2e-14
At3g33520.1 68416.m04291 actin-related protein 6 (ARP6) nearly i... 67 6e-12
At3g12380.1 68416.m01543 actin/actin-like family protein similar... 60 1e-09
At1g13180.1 68414.m01528 actin-related protein 3 (ARP3) identica... 58 4e-09
At5g56180.2 68418.m07009 actin-related protein, putative (ARP8) ... 50 1e-06
At5g43500.2 68418.m05318 expressed protein 30 0.80
At5g43500.1 68418.m05319 expressed protein 30 0.80
At4g31580.1 68417.m04485 splicing factor RSZp22 (RSZP22) / 9G8-l... 29 1.4
At3g63400.1 68416.m07137 peptidyl-prolyl cis-trans isomerase cyc... 29 1.9
At1g65780.1 68414.m07465 tRNA-splicing endonuclease positive eff... 29 1.9
At3g57520.3 68416.m06405 alkaline alpha galactosidase, putative ... 28 4.3
At3g57520.2 68416.m06404 alkaline alpha galactosidase, putative ... 28 4.3
At3g57520.1 68416.m06403 alkaline alpha galactosidase, putative ... 28 4.3
At3g13570.1 68416.m01707 SC35-like splicing factor, 30a kD (SCL3... 28 4.3
At2g46430.1 68415.m05778 cyclic nucleotide-regulated ion channel... 28 4.3
At1g23860.2 68414.m03010 splicing factor RSZp21 (RSZP21) / 9G8-l... 28 4.3
At1g23860.1 68414.m03009 splicing factor RSZp21 (RSZP21) / 9G8-l... 28 4.3
At4g30520.1 68417.m04333 leucine-rich repeat family protein / pr... 27 5.7
At2g24590.1 68415.m02936 splicing factor, putative similar to to... 27 5.7
At5g20250.2 68418.m02411 raffinose synthase family protein / see... 27 7.5
At5g20250.1 68418.m02410 raffinose synthase family protein / see... 27 7.5
At2g46440.1 68415.m05779 cyclic nucleotide-regulated ion channel... 27 7.5
At2g06010.1 68415.m00657 expressed protein 27 7.5
At5g55100.2 68418.m06869 SWAP (Suppressor-of-White-APricot)/surp... 27 9.9
At5g55100.1 68418.m06868 SWAP (Suppressor-of-White-APricot)/surp... 27 9.9
At5g35830.1 68418.m04305 ankyrin repeat family protein contains ... 27 9.9
At4g36980.1 68417.m05240 expressed protein 27 9.9
At4g10290.1 68417.m01692 hypothetical protein 27 9.9
At3g28790.1 68416.m03593 expressed protein 27 9.9
>At3g53750.1 68416.m05938 actin 3 (ACT3) identical to SP|P53493
Actin 3 {Arabidopsis thaliana}; supported by full-length
cDNA: Ceres: 19581.
Length = 377
Score = 248 bits (606), Expect = 2e-66
Identities = 113/137 (82%), Positives = 127/137 (92%)
Frame = +2
Query: 104 KILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAAASTSLEKSYELPDGQVITI 283
KILTERGYSFTTTAEREIVRDIKEKLCY+ALD+EQE+ TA S+S+EK+YELPDGQVITI
Sbjct: 193 KILTERGYSFTTTAEREIVRDIKEKLCYIALDYEQELETAKTSSSVEKNYELPDGQVITI 252
Query: 284 GNERFRCPEALFQPSFLGMESCGIHETVYNSIMKCDVDIRKDLYANTVMSGGTTMYPGIA 463
G+ERFRCPE L+QPS +GME+ GIHET YNSIMKCDVDIRKDLY N V+SGGTTM+PGIA
Sbjct: 253 GSERFRCPEVLYQPSMIGMENAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGTTMFPGIA 312
Query: 464 DRMQKEITALAPSTIKI 514
DRM KEITALAPS++KI
Sbjct: 313 DRMSKEITALAPSSMKI 329
Score = 72.1 bits (169), Expect = 2e-13
Identities = 33/34 (97%), Positives = 33/34 (97%)
Frame = +1
Query: 4 GVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMK 105
GVSHTVPIYEGYALPHAILRLDLAGRDLTD LMK
Sbjct: 160 GVSHTVPIYEGYALPHAILRLDLAGRDLTDALMK 193
>At2g37620.1 68415.m04615 actin 1 (ACT1) identical to SP|P10671
Actin 1 (Actin 3) {Arabidopsis thaliana}
Length = 377
Score = 248 bits (606), Expect = 2e-66
Identities = 113/137 (82%), Positives = 127/137 (92%)
Frame = +2
Query: 104 KILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAAASTSLEKSYELPDGQVITI 283
KILTERGYSFTTTAEREIVRDIKEKLCY+ALD+EQE+ TA S+S+EK+YELPDGQVITI
Sbjct: 193 KILTERGYSFTTTAEREIVRDIKEKLCYIALDYEQELETAKTSSSVEKNYELPDGQVITI 252
Query: 284 GNERFRCPEALFQPSFLGMESCGIHETVYNSIMKCDVDIRKDLYANTVMSGGTTMYPGIA 463
G+ERFRCPE L+QPS +GME+ GIHET YNSIMKCDVDIRKDLY N V+SGGTTM+PGIA
Sbjct: 253 GSERFRCPEVLYQPSMIGMENAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGTTMFPGIA 312
Query: 464 DRMQKEITALAPSTIKI 514
DRM KEITALAPS++KI
Sbjct: 313 DRMSKEITALAPSSMKI 329
Score = 72.1 bits (169), Expect = 2e-13
Identities = 33/34 (97%), Positives = 33/34 (97%)
Frame = +1
Query: 4 GVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMK 105
GVSHTVPIYEGYALPHAILRLDLAGRDLTD LMK
Sbjct: 160 GVSHTVPIYEGYALPHAILRLDLAGRDLTDALMK 193
>At3g12110.1 68416.m01507 actin 11 (ACT11) identical to SP|P53496
Actin 11 {Arabidopsis thaliana}
Length = 377
Score = 244 bits (598), Expect = 2e-65
Identities = 113/137 (82%), Positives = 125/137 (91%)
Frame = +2
Query: 104 KILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAAASTSLEKSYELPDGQVITI 283
KILTERGYSFTT+AEREIVRD+KEKL Y+ALD+EQEM TA S+S+EKSYELPDGQVITI
Sbjct: 193 KILTERGYSFTTSAEREIVRDVKEKLAYIALDYEQEMETANTSSSVEKSYELPDGQVITI 252
Query: 284 GNERFRCPEALFQPSFLGMESCGIHETVYNSIMKCDVDIRKDLYANTVMSGGTTMYPGIA 463
G ERFRCPE LFQPS +GME+ GIHET YNSIMKCDVDIRKDLY N V+SGGTTM+PGIA
Sbjct: 253 GGERFRCPEVLFQPSLVGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGTTMFPGIA 312
Query: 464 DRMQKEITALAPSTIKI 514
DRM KEITALAPS++KI
Sbjct: 313 DRMSKEITALAPSSMKI 329
Score = 75.8 bits (178), Expect = 2e-14
Identities = 34/34 (100%), Positives = 34/34 (100%)
Frame = +1
Query: 4 GVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMK 105
GVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMK
Sbjct: 160 GVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMK 193
>At5g09810.1 68418.m01135 actin 7 (ACT7) / actin 2 identical to
SP|P53492 Actin 7 (Actin-2) {Arabidopsis thaliana}
Length = 377
Score = 240 bits (587), Expect = 5e-64
Identities = 112/137 (81%), Positives = 125/137 (91%)
Frame = +2
Query: 104 KILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAAASTSLEKSYELPDGQVITI 283
KILTERGY FTTTAEREIVRDIKEKL YVALD+EQE+ TA +S+S+EK+YELPDGQVITI
Sbjct: 193 KILTERGYMFTTTAEREIVRDIKEKLAYVALDYEQELETAKSSSSVEKNYELPDGQVITI 252
Query: 284 GNERFRCPEALFQPSFLGMESCGIHETVYNSIMKCDVDIRKDLYANTVMSGGTTMYPGIA 463
G ERFRCPE LFQPS +GME+ GIHET YNSIMKCDVDIRKDLY N V+SGG+TM+PGIA
Sbjct: 253 GAERFRCPEVLFQPSLIGMEAPGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIA 312
Query: 464 DRMQKEITALAPSTIKI 514
DRM KEITALAPS++KI
Sbjct: 313 DRMSKEITALAPSSMKI 329
Score = 72.1 bits (169), Expect = 2e-13
Identities = 33/34 (97%), Positives = 33/34 (97%)
Frame = +1
Query: 4 GVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMK 105
GVSHTVPIYEGYALPHAILRLDLAGRDLTD LMK
Sbjct: 160 GVSHTVPIYEGYALPHAILRLDLAGRDLTDSLMK 193
>At3g18780.2 68416.m02386 actin 2 (ACT2) identical to SP|Q96292
Actin 2 {Arabidopsis thaliana}; nearly identical to
SP|Q96293 Actin 8 [Arabidopsis thaliana] GI:1669387 and
to At1g49240
Length = 377
Score = 238 bits (583), Expect = 1e-63
Identities = 111/137 (81%), Positives = 124/137 (90%)
Frame = +2
Query: 104 KILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAAASTSLEKSYELPDGQVITI 283
KILTERGY FTTTAEREIVRDIKEKL +VA+D+EQEM T+ S+S+EK+YELPDGQVITI
Sbjct: 193 KILTERGYMFTTTAEREIVRDIKEKLSFVAVDYEQEMETSKTSSSIEKNYELPDGQVITI 252
Query: 284 GNERFRCPEALFQPSFLGMESCGIHETVYNSIMKCDVDIRKDLYANTVMSGGTTMYPGIA 463
G ERFRCPE LFQPSF+GME+ GIHET YNSIMKCDVDIRKDLY N V+SGGTTM+ GIA
Sbjct: 253 GAERFRCPEVLFQPSFVGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGTTMFSGIA 312
Query: 464 DRMQKEITALAPSTIKI 514
DRM KEITALAPS++KI
Sbjct: 313 DRMSKEITALAPSSMKI 329
Score = 72.9 bits (171), Expect = 1e-13
Identities = 32/34 (94%), Positives = 34/34 (100%)
Frame = +1
Query: 4 GVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMK 105
GVSHTVPIYEG++LPHAILRLDLAGRDLTDYLMK
Sbjct: 160 GVSHTVPIYEGFSLPHAILRLDLAGRDLTDYLMK 193
>At3g18780.1 68416.m02385 actin 2 (ACT2) identical to SP|Q96292
Actin 2 {Arabidopsis thaliana}; nearly identical to
SP|Q96293 Actin 8 [Arabidopsis thaliana] GI:1669387 and
to At1g49240
Length = 371
Score = 238 bits (583), Expect = 1e-63
Identities = 111/137 (81%), Positives = 124/137 (90%)
Frame = +2
Query: 104 KILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAAASTSLEKSYELPDGQVITI 283
KILTERGY FTTTAEREIVRDIKEKL +VA+D+EQEM T+ S+S+EK+YELPDGQVITI
Sbjct: 193 KILTERGYMFTTTAEREIVRDIKEKLSFVAVDYEQEMETSKTSSSIEKNYELPDGQVITI 252
Query: 284 GNERFRCPEALFQPSFLGMESCGIHETVYNSIMKCDVDIRKDLYANTVMSGGTTMYPGIA 463
G ERFRCPE LFQPSF+GME+ GIHET YNSIMKCDVDIRKDLY N V+SGGTTM+ GIA
Sbjct: 253 GAERFRCPEVLFQPSFVGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGTTMFSGIA 312
Query: 464 DRMQKEITALAPSTIKI 514
DRM KEITALAPS++KI
Sbjct: 313 DRMSKEITALAPSSMKI 329
Score = 72.9 bits (171), Expect = 1e-13
Identities = 32/34 (94%), Positives = 34/34 (100%)
Frame = +1
Query: 4 GVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMK 105
GVSHTVPIYEG++LPHAILRLDLAGRDLTDYLMK
Sbjct: 160 GVSHTVPIYEGFSLPHAILRLDLAGRDLTDYLMK 193
>At1g49240.1 68414.m05520 actin 8 (ACT8) identical to SP|Q96293
Actin 8 {Arabidopsis thaliana}; nearly identical to
SP|Q96292 Actin 2 [Arabidopsis thaliana] GI:1669387, and
to At3g18780
Length = 377
Score = 238 bits (583), Expect = 1e-63
Identities = 111/137 (81%), Positives = 124/137 (90%)
Frame = +2
Query: 104 KILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAAASTSLEKSYELPDGQVITI 283
KILTERGY FTTTAEREIVRDIKEKL +VA+D+EQEM T+ S+S+EK+YELPDGQVITI
Sbjct: 193 KILTERGYMFTTTAEREIVRDIKEKLSFVAVDYEQEMETSKTSSSIEKNYELPDGQVITI 252
Query: 284 GNERFRCPEALFQPSFLGMESCGIHETVYNSIMKCDVDIRKDLYANTVMSGGTTMYPGIA 463
G ERFRCPE LFQPSF+GME+ GIHET YNSIMKCDVDIRKDLY N V+SGGTTM+ GIA
Sbjct: 253 GAERFRCPEVLFQPSFVGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGTTMFSGIA 312
Query: 464 DRMQKEITALAPSTIKI 514
DRM KEITALAPS++KI
Sbjct: 313 DRMSKEITALAPSSMKI 329
Score = 72.9 bits (171), Expect = 1e-13
Identities = 32/34 (94%), Positives = 34/34 (100%)
Frame = +1
Query: 4 GVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMK 105
GVSHTVPIYEG++LPHAILRLDLAGRDLTDYLMK
Sbjct: 160 GVSHTVPIYEGFSLPHAILRLDLAGRDLTDYLMK 193
>At5g59370.1 68418.m07440 actin 4 (ACT4) identical to SP|P53494
Actin 4 {Arabidopsis thaliana}
Length = 377
Score = 235 bits (576), Expect = 1e-62
Identities = 110/137 (80%), Positives = 123/137 (89%)
Frame = +2
Query: 104 KILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAAASTSLEKSYELPDGQVITI 283
KILTERGYSFTTTAEREIVRD+KEKL Y+ALDFEQE+ T+ S+S+EKS+ELPDGQVITI
Sbjct: 193 KILTERGYSFTTTAEREIVRDMKEKLSYIALDFEQELETSKTSSSVEKSFELPDGQVITI 252
Query: 284 GNERFRCPEALFQPSFLGMESCGIHETVYNSIMKCDVDIRKDLYANTVMSGGTTMYPGIA 463
G ERFRCPE LFQPS +GME+ GIHET YNSIMKCDVDIRKDLY N V+SGGTTM+ GI
Sbjct: 253 GAERFRCPEVLFQPSMIGMENPGIHETTYNSIMKCDVDIRKDLYGNIVLSGGTTMFGGIG 312
Query: 464 DRMQKEITALAPSTIKI 514
DRM KEITALAPS++KI
Sbjct: 313 DRMSKEITALAPSSMKI 329
Score = 73.7 bits (173), Expect = 7e-14
Identities = 33/34 (97%), Positives = 34/34 (100%)
Frame = +1
Query: 4 GVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMK 105
GVSHTVPIYEGYALPHAILRLDLAGRDLTD+LMK
Sbjct: 160 GVSHTVPIYEGYALPHAILRLDLAGRDLTDHLMK 193
>At3g46520.1 68416.m05050 actin 12 (ACT12) identical to SP|P53497
Actin 12 {Arabidopsis thaliana}
Length = 377
Score = 234 bits (573), Expect = 2e-62
Identities = 109/137 (79%), Positives = 123/137 (89%)
Frame = +2
Query: 104 KILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAAASTSLEKSYELPDGQVITI 283
KILTERGYSFTTTAEREIVRD+KEKL Y+ALD+EQE+ T+ S+S+EKS+ELPDGQVITI
Sbjct: 193 KILTERGYSFTTTAEREIVRDMKEKLSYIALDYEQELETSKTSSSVEKSFELPDGQVITI 252
Query: 284 GNERFRCPEALFQPSFLGMESCGIHETVYNSIMKCDVDIRKDLYANTVMSGGTTMYPGIA 463
G ERFRCPE LFQPS +GME+ GIHET YNSIMKCDVDIRKDLY N V+SGGTTM+ GI
Sbjct: 253 GAERFRCPEVLFQPSMIGMENPGIHETTYNSIMKCDVDIRKDLYGNIVLSGGTTMFGGIG 312
Query: 464 DRMQKEITALAPSTIKI 514
DRM KEITALAPS++KI
Sbjct: 313 DRMSKEITALAPSSMKI 329
Score = 73.7 bits (173), Expect = 7e-14
Identities = 33/34 (97%), Positives = 34/34 (100%)
Frame = +1
Query: 4 GVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMK 105
GVSHTVPIYEGYALPHAILRLDLAGRDLTD+LMK
Sbjct: 160 GVSHTVPIYEGYALPHAILRLDLAGRDLTDHLMK 193
>At2g42100.1 68415.m05205 actin, putative very strong similarity to
SP|P53496 Actin 11 {Arabidopsis thaliana}, SP|P53493
Actin 3 {Arabidopsis thaliana}; contains Pfam profile
PF00022: Actin
Length = 378
Score = 227 bits (556), Expect = 3e-60
Identities = 102/137 (74%), Positives = 121/137 (88%)
Frame = +2
Query: 104 KILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAAASTSLEKSYELPDGQVITI 283
KI+ ERGY++TT+AEREIVRDIKEKLCY+A+D+EQEM A S++++++YELPDGQVITI
Sbjct: 194 KIMMERGYTYTTSAEREIVRDIKEKLCYIAVDYEQEMEKATTSSAIDRTYELPDGQVITI 253
Query: 284 GNERFRCPEALFQPSFLGMESCGIHETVYNSIMKCDVDIRKDLYANTVMSGGTTMYPGIA 463
G ERFRCPE LFQ S +GME+ GIHET YNSIMKCDVDIRKDLY N V+SGGTTM+PGIA
Sbjct: 254 GAERFRCPEVLFQTSLIGMETSGIHETTYNSIMKCDVDIRKDLYGNIVLSGGTTMFPGIA 313
Query: 464 DRMQKEITALAPSTIKI 514
DRM KEI ALAP ++KI
Sbjct: 314 DRMNKEINALAPPSMKI 330
Score = 71.7 bits (168), Expect = 3e-13
Identities = 32/34 (94%), Positives = 33/34 (97%)
Frame = +1
Query: 4 GVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMK 105
GVSHTVPIYEGYALPHAILRLDLAGRDLT+YL K
Sbjct: 161 GVSHTVPIYEGYALPHAILRLDLAGRDLTEYLTK 194
>At2g42170.1 68415.m05219 actin, putative similar to actin 2
[Arabidopsis thaliana] gi|9293903|dbj|BAB01806
Length = 329
Score = 196 bits (479), Expect = 6e-51
Identities = 92/137 (67%), Positives = 112/137 (81%)
Frame = +2
Query: 104 KILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAAASTSLEKSYELPDGQVITI 283
KI+ ERGY T+AERE+VRDIKE+ Y+ALD+EQEM A S++++++YELPDGQVITI
Sbjct: 148 KIMMERGY---TSAEREVVRDIKEQFGYIALDYEQEMEKATKSSAIDRTYELPDGQVITI 204
Query: 284 GNERFRCPEALFQPSFLGMESCGIHETVYNSIMKCDVDIRKDLYANTVMSGGTTMYPGIA 463
G ERFRCPE LFQPS +GME+ GIHE YNSIMKCD DIRKDLY N V+SGGTTM+ GI
Sbjct: 205 GAERFRCPEVLFQPSLIGMETSGIHEKTYNSIMKCDDDIRKDLYGNIVLSGGTTMFRGIE 264
Query: 464 DRMQKEITALAPSTIKI 514
+RM KEI ALA + ++I
Sbjct: 265 ERMTKEINALAAANMRI 281
Score = 62.5 bits (145), Expect = 2e-10
Identities = 29/34 (85%), Positives = 31/34 (91%)
Frame = +1
Query: 4 GVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMK 105
GVS+ VPIYEG ALPHAILRLDLAGR LT+YLMK
Sbjct: 115 GVSYIVPIYEGSALPHAILRLDLAGRHLTNYLMK 148
>At2g42090.1 68415.m05204 actin, putative similar to SP|P53496 Actin
11 {Arabidopsis thaliana}; contains Pfam profile
PF00022: Actin
Length = 366
Score = 192 bits (468), Expect = 1e-49
Identities = 87/137 (63%), Positives = 108/137 (78%)
Frame = +2
Query: 104 KILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAAASTSLEKSYELPDGQVITI 283
+I+TERGY++TT+AEREIVRDIKEKLCYVALD+EQEM +++K+Y LPDGQ ITI
Sbjct: 182 EIMTERGYTYTTSAEREIVRDIKEKLCYVALDYEQEMEKTTKGWTIDKTYVLPDGQEITI 241
Query: 284 GNERFRCPEALFQPSFLGMESCGIHETVYNSIMKCDVDIRKDLYANTVMSGGTTMYPGIA 463
ERF CPE LFQPS +G ES GIHE NSI+KC VD R+D+Y N +M+GGTTM GI
Sbjct: 242 EAERFMCPEVLFQPSVIGKESSGIHEATRNSILKCPVDTRRDMYGNILMTGGTTMLHGIK 301
Query: 464 DRMQKEITALAPSTIKI 514
+RM KE+ AL PS++K+
Sbjct: 302 ERMTKELNALVPSSMKV 318
Score = 66.5 bits (155), Expect = 1e-11
Identities = 28/33 (84%), Positives = 31/33 (93%)
Frame = +1
Query: 7 VSHTVPIYEGYALPHAILRLDLAGRDLTDYLMK 105
VSHTVP+YEGYALPH ILRLDL GRDLTDYL++
Sbjct: 150 VSHTVPVYEGYALPHGILRLDLGGRDLTDYLIE 182
>At3g27000.1 68416.m03378 actin-related protein 2 (ARP2) nearly
identical to actin-related protein 2 (ARP2) [Arabidopsis
thaliana] GI:3818624; contains Pfam profile PF00022:
Actin
Length = 389
Score = 136 bits (328), Expect = 1e-32
Identities = 60/126 (47%), Positives = 88/126 (69%)
Frame = +2
Query: 107 ILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAAASTSLEKSYELPDGQVITIG 286
+L+ RGY+ TA+ E VR+IKEKLCY++ D+++E +T L K+Y LPDG+VI +G
Sbjct: 193 LLSRRGYAMNKTADFETVREIKEKLCYISYDYKRESQLGLETTILVKNYTLPDGRVIKVG 252
Query: 287 NERFRCPEALFQPSFLGMESCGIHETVYNSIMKCDVDIRKDLYANTVMSGGTTMYPGIAD 466
ERF+ PEALF P + +E G+ + V+ I + D+D R LY + V+SGG+TMYPG+
Sbjct: 253 TERFQAPEALFTPELIDVEGDGMADMVFRCIQEMDIDNRMMLYQHIVLSGGSTMYPGLPS 312
Query: 467 RMQKEI 484
R++KEI
Sbjct: 313 RLEKEI 318
Score = 44.8 bits (101), Expect = 3e-05
Identities = 18/40 (45%), Positives = 27/40 (67%)
Frame = +1
Query: 4 GVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKDPHREG 123
GV+H VP+ +GY+ PH R+++AGR +T YL+ R G
Sbjct: 159 GVTHVVPVVDGYSFPHLTKRMNVAGRHITAYLVDLLSRRG 198
>At1g18450.1 68414.m02302 actin-related protein 4 (ARP4) neary
identical to actin-related protein 4 (ARP4) [Arabidopsis
thaliana] GI:21427463; contains Pfam profile PF00022:
Actin; supporting cDNA gi|21427462|gb|AF507912.1|
Length = 441
Score = 85.4 bits (202), Expect = 2e-17
Identities = 48/141 (34%), Positives = 81/141 (57%), Gaps = 12/141 (8%)
Frame = +2
Query: 128 SFTTTAEREIVRDIKEKLCYVALDFEQEMATAAASTSLEKSYELPDGQVITIGNERFRCP 307
S+ +R IV DIK+ +C V + + + T+ SYELPDGQ + IG +RF+ P
Sbjct: 253 SYKLFCQRMIVGDIKDSICRVPDTPYDDKSYSNIPTT---SYELPDGQTLEIGADRFKVP 309
Query: 308 EALFQPSFL----GMESC--------GIHETVYNSIMKCDVDIRKDLYANTVMSGGTTMY 451
+ +F PS + GME G+ V SI KCDVDIR++LY++ +++GGT+
Sbjct: 310 DVMFNPSIVQTIPGMEKYAEMIPSVRGLPHMVMESINKCDVDIRRELYSSILLAGGTSSM 369
Query: 452 PGIADRMQKEITALAPSTIKI 514
+ +R++K++ +P + ++
Sbjct: 370 QQLKERLEKDLIEESPHSARV 390
Score = 33.1 bits (72), Expect = 0.11
Identities = 16/44 (36%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Frame = +1
Query: 4 GVSHTV-PIYEGYALPHAILRLDLAGRDLTDYLMKDPHREGLLV 132
G S T+ P+++GY L A++ L G LTD L+K +G+ +
Sbjct: 181 GGSTTISPVHDGYVLQKAVVSSPLGGEFLTDCLLKSLESKGIKI 224
>At3g60830.1 68416.m06805 actin-related protein 7 (ARP7) identical
to actin-related protein 7 (ARP7) [Arabidopsis thaliana]
GI:21427469; contains Pfam profile PF00022: Actin
Length = 363
Score = 79.0 bits (186), Expect = 2e-15
Identities = 48/122 (39%), Positives = 64/122 (52%), Gaps = 4/122 (3%)
Frame = +2
Query: 158 VRDIKEKLCYVALDFEQEMATAAASTSLEKSYELPDGQVITIGNERFRCPEALFQPSFLG 337
V +KE+ A E E+A + + LPDGQVI+IG ER+ EALFQPS LG
Sbjct: 195 VEKLKEQYANCA---EDEIAYKKTQNCEIEQHTLPDGQVISIGRERYSVGEALFQPSILG 251
Query: 338 MESCGIHETVYNSIMKCDVDIRKDLYANTVMSGGTTMYPGIADRMQKEI----TALAPST 505
+E GI E + I + + L NTV+ GGTT G R QKE +A+ P+
Sbjct: 252 LEEHGIVEQLVRIISTVSSENHRQLLENTVLCGGTTSMTGFESRFQKEANLCSSAIRPTL 311
Query: 506 IK 511
+K
Sbjct: 312 VK 313
>At5g56180.1 68418.m07008 actin-related protein, putative (ARP8)
strong similarity to actin-related protein 8A (ARP8)
[Arabidopsis thaliana] GI:21427473; contains Pfam
profile PF00022: Actin; supporting cDNA
gi|21427470|gb|AF507916.1|
Length = 471
Score = 75.8 bits (178), Expect = 2e-14
Identities = 42/120 (35%), Positives = 67/120 (55%), Gaps = 3/120 (2%)
Frame = +2
Query: 158 VRDIKEKLCYVALDFEQEMATAAASTSLEKSYELPDGQVITIGNERFRCPEALFQPSFLG 337
VR +KEKLCYVALD++ E+ S + S E+ T+ ERF+ E LFQP G
Sbjct: 309 VRTLKEKLCYVALDYKAEL-----SKDTQASVEVSGEGWFTLSKERFQTGEILFQPRLAG 363
Query: 338 MESCGIHETVYNSIMKCD-VDIRKD--LYANTVMSGGTTMYPGIADRMQKEITALAPSTI 508
M + +H+ V + CD + D + V++GG+ PG+++R+++E+ PS+I
Sbjct: 364 MRAMSLHQAVSLCMDHCDAAGLTGDDSWFKTVVLTGGSACLPGLSERLERELQDHLPSSI 423
>At3g33520.1 68416.m04291 actin-related protein 6 (ARP6) nearly
identical to actin-related protein 6 (ARP6) [Arabidopsis
thaliana] GI:21427467; contains Pfam profile PF00022:
Actin
Length = 421
Score = 67.3 bits (157), Expect = 6e-12
Identities = 35/120 (29%), Positives = 64/120 (53%)
Frame = +2
Query: 140 TAEREIVRDIKEKLCYVALDFEQEMATAAASTSLEKSYELPDGQVITIGNERFRCPEALF 319
T + V+D + +++L E+E K ++ + I + NERF PE LF
Sbjct: 250 THTKGYVKDPQAAKRFLSLS-EKESVVVMDKVGERKKADMNKNE-IDLTNERFLVPETLF 307
Query: 320 QPSFLGMESCGIHETVYNSIMKCDVDIRKDLYANTVMSGGTTMYPGIADRMQKEITALAP 499
QP+ LGM G+ E + +I C ++ LY + +++GG+T++P + +R++ E+ L P
Sbjct: 308 QPADLGMNQAGLAECIVRAINSCHSYLQPVLYQSIILTGGSTLFPQLKERLEGELRPLVP 367
Score = 39.9 bits (89), Expect = 0.001
Identities = 23/54 (42%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Frame = +2
Query: 128 SFTTTAEREIVRDIKEKLCYVALDFEQEMATAAASTSLEKS-YELPDGQVITIG 286
S E +V D KEKLC+V+LD +++ A +L KS Y LPDG T G
Sbjct: 201 SINVMDETFLVDDAKEKLCFVSLDLLRDLRLARNGNTLIKSTYVLPDGVTHTKG 254
Score = 36.7 bits (81), Expect = 0.009
Identities = 14/30 (46%), Positives = 20/30 (66%)
Frame = +1
Query: 10 SHTVPIYEGYALPHAILRLDLAGRDLTDYL 99
+H VP+ + L HAI R+DL G+ T+YL
Sbjct: 164 THAVPVLHNFTLNHAIKRIDLGGKAFTNYL 193
>At3g12380.1 68416.m01543 actin/actin-like family protein similar to
SP|P53946 Actin-like protein ARP5 {Saccharomyces
cerevisiae}; contains Pfam profile PF00022: Actin
Length = 724
Score = 59.7 bits (138), Expect = 1e-09
Identities = 37/124 (29%), Positives = 66/124 (53%), Gaps = 6/124 (4%)
Frame = +2
Query: 146 EREIVRDIKEKLCYVALDFEQEMATAAASTSLEKSYELP---DGQVITIGNERFRCPEAL 316
E E+ R + +L + F Q++ + TS E P + I IG ERFRCPE L
Sbjct: 544 EAELAR-LSSRLQEIDPTFVQKVEGELSQTSGEVPRVRPLTEEDYKIVIGIERFRCPEIL 602
Query: 317 FQPSFLGMESCGIHETVYNSIMKC---DVDIRKDLYANTVMSGGTTMYPGIADRMQKEIT 487
F P+ +G++ G+ E SI + + ++ + L ++ +M+GG ++ PG+ +R++ I
Sbjct: 603 FHPNLIGIDQVGLDEMAGTSIRRLPHDEKELEERLTSSILMTGGCSLLPGMNERLECGIR 662
Query: 488 ALAP 499
+ P
Sbjct: 663 MIRP 666
>At1g13180.1 68414.m01528 actin-related protein 3 (ARP3) identical
to actin-related protein 3 (ARP3) [Arabidopsis thaliana]
GI:21427461; contains Pfam profile PF00022: Actin
Length = 427
Score = 58.0 bits (134), Expect = 4e-09
Identities = 36/142 (25%), Positives = 62/142 (43%), Gaps = 7/142 (4%)
Frame = +2
Query: 104 KILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEM----ATAAASTSLEKSYELPDGQ 271
+++ ERG + ++ R +KE CY D +E A K + G
Sbjct: 215 QLMRERGENIPPEDSFDVARKVKEMYCYTCSDIVKEFNKHDKEPAKYIKQWKGVKPKTGA 274
Query: 272 VIT--IGNERFRCPEALFQPSFLGME-SCGIHETVYNSIMKCDVDIRKDLYANTVMSGGT 442
T +G ERF PE F P + + + + I +D R+ LY N V+SGG+
Sbjct: 275 PYTCDVGYERFLGPEVFFNPEIYSNDFTTTLPAVIDKCIQSAPIDTRRALYKNIVLSGGS 334
Query: 443 TMYPGIADRMQKEITALAPSTI 508
TM+ R+Q+++ + + +
Sbjct: 335 TMFKDFGRRLQRDLKKIVDARV 356
Score = 33.9 bits (74), Expect = 0.065
Identities = 12/34 (35%), Positives = 22/34 (64%)
Frame = +1
Query: 4 GVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMK 105
G +H VP+ EGY + I + +AG+D+T ++ +
Sbjct: 182 GATHVVPVAEGYVIGSCIKSIPIAGKDVTLFIQQ 215
>At5g56180.2 68418.m07009 actin-related protein, putative (ARP8)
strong similarity to actin-related protein 8A (ARP8)
[Arabidopsis thaliana] GI:21427473; contains Pfam
profile PF00022: Actin; supporting cDNA
gi|21427470|gb|AF507916.1|
Length = 387
Score = 49.6 bits (113), Expect = 1e-06
Identities = 29/71 (40%), Positives = 40/71 (56%)
Frame = +2
Query: 158 VRDIKEKLCYVALDFEQEMATAAASTSLEKSYELPDGQVITIGNERFRCPEALFQPSFLG 337
VR +KEKLCYVALD++ E+ S + S E+ T+ ERF+ E LFQP G
Sbjct: 309 VRTLKEKLCYVALDYKAEL-----SKDTQASVEVSGEGWFTLSKERFQTGEILFQPRLAG 363
Query: 338 MESCGIHETVY 370
+ +H+ VY
Sbjct: 364 II---VHKLVY 371
>At5g43500.2 68418.m05318 expressed protein
Length = 584
Score = 30.3 bits (65), Expect = 0.80
Identities = 13/56 (23%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Frame = +2
Query: 341 ESCGIHETVYNSIMKCD-VDIRKDLYANTVMSGGTTMYPGIADRMQKEITALAPST 505
E G+ E + +SI+ +D+R+ L+++ + GG + G+ +++ + P T
Sbjct: 458 EKIGLAEAITSSILSAGRIDLRRKLFSSIQLIGGAGLTKGLVAAVEERVLHAIPPT 513
>At5g43500.1 68418.m05319 expressed protein
Length = 596
Score = 30.3 bits (65), Expect = 0.80
Identities = 13/56 (23%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Frame = +2
Query: 341 ESCGIHETVYNSIMKCD-VDIRKDLYANTVMSGGTTMYPGIADRMQKEITALAPST 505
E G+ E + +SI+ +D+R+ L+++ + GG + G+ +++ + P T
Sbjct: 470 EKIGLAEAITSSILSAGRIDLRRKLFSSIQLIGGAGLTKGLVAAVEERVLHAIPPT 525
>At4g31580.1 68417.m04485 splicing factor RSZp22 (RSZP22) / 9G8-like
SR protein (SRZ22) identical to RSZp22 protein
[Arabidopsis thaliana] gi|2582645|emb|CAA05352, 9G8-like
SR protein [Arabidopsis thaliana] GI:3435094; contains
Pfam profiles PF00076: RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain) and PF00098: Zinc knuckle;
identical to cDNA 9G8-like SR protein (SRZ22) GI:3435093
Length = 200
Score = 29.5 bits (63), Expect = 1.4
Identities = 20/52 (38%), Positives = 25/52 (48%), Gaps = 5/52 (9%)
Frame = +3
Query: 21 THLRRLRSAPRHPPS---GLGWSRLDRLPHERSSP--RGVTRSPPPLRGKSF 161
T RR +S R PP + R P RS P R + SPPP RG+S+
Sbjct: 120 TGRRRSKSRSRTPPRYRRSPSYGRRSYSPRARSPPPPRRRSPSPPPARGRSY 171
>At3g63400.1 68416.m07137 peptidyl-prolyl cis-trans isomerase
cyclophilin-type family protein similar to cyclophylin
[Digitalis lanata] GI:1563719; contains Pfam profile
PF00160: peptidyl-prolyl cis-trans isomerase,
cyclophilin-type; contains AT-donor splice site at
intron 9
Length = 570
Score = 29.1 bits (62), Expect = 1.9
Identities = 20/43 (46%), Positives = 21/43 (48%), Gaps = 6/43 (13%)
Frame = +3
Query: 39 RSAPRHPPSGLGWS--RLDRLPHERS----SPRGVTRSPPPLR 149
RS PRH P + DR P RS SPRG RSPP R
Sbjct: 436 RSPPRHWPDRRNFQDRNRDRYPSNRSYSERSPRGRFRSPPRRR 478
>At1g65780.1 68414.m07465 tRNA-splicing endonuclease positive
effector-related contains similarity to SEN1, a positive
effector of tRNA-splicing endonuclease [Saccharomyces
cerevisiae] gi|172574|gb|AAB63976
Length = 1065
Score = 29.1 bits (62), Expect = 1.9
Identities = 11/32 (34%), Positives = 22/32 (68%)
Frame = +2
Query: 149 REIVRDIKEKLCYVALDFEQEMATAAASTSLE 244
R +++D KE+ C+ + ++ +A A AST++E
Sbjct: 826 RNLIQDAKERGCFHSAGEDESLAQAIASTNIE 857
>At3g57520.3 68416.m06405 alkaline alpha galactosidase, putative
similar to alkaline alpha galactosidase II [Cucumis
melo] GI:29838631; contains Pfam profile PF05691:
Raffinose synthase or seed imbibition protein Sip1
Length = 565
Score = 27.9 bits (59), Expect = 4.3
Identities = 14/40 (35%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Frame = +1
Query: 10 SHTVPIYEGYALPH-AILRLDLAGRDLTDYLMKDPHREGL 126
+H + LP ++LR L GR D L DP R+G+
Sbjct: 512 NHNFDLLRKLVLPDGSVLRAKLPGRPTRDCLFADPARDGI 551
>At3g57520.2 68416.m06404 alkaline alpha galactosidase, putative
similar to alkaline alpha galactosidase II [Cucumis
melo] GI:29838631; contains Pfam profile PF05691:
Raffinose synthase or seed imbibition protein Sip1
Length = 656
Score = 27.9 bits (59), Expect = 4.3
Identities = 14/40 (35%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Frame = +1
Query: 10 SHTVPIYEGYALPH-AILRLDLAGRDLTDYLMKDPHREGL 126
+H + LP ++LR L GR D L DP R+G+
Sbjct: 512 NHNFDLLRKLVLPDGSVLRAKLPGRPTRDCLFADPARDGI 551
>At3g57520.1 68416.m06403 alkaline alpha galactosidase, putative
similar to alkaline alpha galactosidase II [Cucumis
melo] GI:29838631; contains Pfam profile PF05691:
Raffinose synthase or seed imbibition protein Sip1
Length = 773
Score = 27.9 bits (59), Expect = 4.3
Identities = 14/40 (35%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Frame = +1
Query: 10 SHTVPIYEGYALPH-AILRLDLAGRDLTDYLMKDPHREGL 126
+H + LP ++LR L GR D L DP R+G+
Sbjct: 512 NHNFDLLRKLVLPDGSVLRAKLPGRPTRDCLFADPARDGI 551
>At3g13570.1 68416.m01707 SC35-like splicing factor, 30a kD (SCL30a)
almost identical to SC35-like splicing factor SCL30a
GI:9843661 from [Arabidopsis thaliana]; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 262
Score = 27.9 bits (59), Expect = 4.3
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = +3
Query: 81 RLDRLPHERSSPRGVTRSPPPLRGK 155
R +R R SP +RSPPP RG+
Sbjct: 131 RSNRFQDRRRSPPRYSRSPPPRRGR 155
>At2g46430.1 68415.m05778 cyclic nucleotide-regulated ion channel /
cyclic nucleotide-gated channel (CNGC3) identical to
cyclic nucleotide and calmodulin-regulated ion channel
GI:4581201 from [Arabidopsis thaliana]
Length = 706
Score = 27.9 bits (59), Expect = 4.3
Identities = 14/54 (25%), Positives = 24/54 (44%), Gaps = 2/54 (3%)
Frame = -1
Query: 468 LSAIPGYMVVPPDMTVLA--YRSLRMSTSHFMMELYTVSWMPHDSIPRKEGWKR 313
L+ + G+++ D+ +A YR L M Y+V W + + WKR
Sbjct: 571 LTEVEGFLLSADDLKFVATQYRRLHSKQLRHMFRFYSVQWQTWAACFIQAAWKR 624
>At1g23860.2 68414.m03010 splicing factor RSZp21 (RSZP21) / 9G8-like
SR protein (SRZ21) nearly identical to 9G8-like splicing
factor SRZ21 [Arabidopsis thaliana] GI:3435096, RSZp21
protein [Arabidopsis thaliana] GI:2582643
Length = 187
Score = 27.9 bits (59), Expect = 4.3
Identities = 18/53 (33%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
Frame = +3
Query: 6 CLPHRTHLRRLRSAPRHPPS-GLGWSRLDRLPHERSSPRGVTRSPPPLRGKSF 161
C R +RR +PR S G++R P R SP PP RG+S+
Sbjct: 104 CRRGRGSVRRRSPSPRRRRSPDYGYARRSISPRGRRSPPRRRSVTPPRRGRSY 156
>At1g23860.1 68414.m03009 splicing factor RSZp21 (RSZP21) / 9G8-like
SR protein (SRZ21) nearly identical to 9G8-like splicing
factor SRZ21 [Arabidopsis thaliana] GI:3435096, RSZp21
protein [Arabidopsis thaliana] GI:2582643
Length = 187
Score = 27.9 bits (59), Expect = 4.3
Identities = 18/53 (33%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
Frame = +3
Query: 6 CLPHRTHLRRLRSAPRHPPS-GLGWSRLDRLPHERSSPRGVTRSPPPLRGKSF 161
C R +RR +PR S G++R P R SP PP RG+S+
Sbjct: 104 CRRGRGSVRRRSPSPRRRRSPDYGYARRSISPRGRRSPPRRRSVTPPRRGRSY 156
>At4g30520.1 68417.m04333 leucine-rich repeat family protein /
protein kinase family protein contains Pfam domains
PF00560: Leucine Rich Repeat and PF00069: Protein kinase
domain
Length = 648
Score = 27.5 bits (58), Expect = 5.7
Identities = 17/45 (37%), Positives = 24/45 (53%)
Frame = -1
Query: 390 SHFMMELYTVSWMPHDSIPRKEGWKRASGQRNLSLPMVIT*PSGS 256
S F MEL +S H ++ R G+ SG+R L P + P+GS
Sbjct: 343 SQFRMELEMISLAVHKNLLRLIGYCATSGERLLVYPYM---PNGS 384
>At2g24590.1 68415.m02936 splicing factor, putative similar to to
RSZp22 protein [Arabidopsis thaliana]
gi|2582645|emb|CAA05352
Length = 196
Score = 27.5 bits (58), Expect = 5.7
Identities = 17/43 (39%), Positives = 21/43 (48%)
Frame = +3
Query: 33 RLRSAPRHPPSGLGWSRLDRLPHERSSPRGVTRSPPPLRGKSF 161
R RS PR+ S R P RS P RSP P RG+++
Sbjct: 126 RSRSPPRYRKSPTYGGRRSYSPRARSPPPPRRRSPSP-RGRNY 167
>At5g20250.2 68418.m02411 raffinose synthase family protein / seed
imbibition protein, putative (din10) similar to seed
imbibition protein GB:AAA32975 GI:167100 from [Hordeum
vulgare]; contains nonconsensus AT donor splice site at
intron 1; contains Pfam profile PF05691: Raffinose
synthase or seed imbibition protein Sip1; identical to
cDNA seed imbibition protein (din10) partial cds
GI:10834551
Length = 749
Score = 27.1 bits (57), Expect = 7.5
Identities = 15/39 (38%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
Frame = +1
Query: 13 HTVPIYEGYALPH-AILRLDLAGRDLTDYLMKDPHREGL 126
H + LP +ILR L GR D L DP R+G+
Sbjct: 511 HNFELLRKLVLPDGSILRARLPGRPTRDCLFADPARDGV 549
>At5g20250.1 68418.m02410 raffinose synthase family protein / seed
imbibition protein, putative (din10) similar to seed
imbibition protein GB:AAA32975 GI:167100 from [Hordeum
vulgare]; contains nonconsensus AT donor splice site at
intron 1; contains Pfam profile PF05691: Raffinose
synthase or seed imbibition protein Sip1; identical to
cDNA seed imbibition protein (din10) partial cds
GI:10834551
Length = 844
Score = 27.1 bits (57), Expect = 7.5
Identities = 15/39 (38%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
Frame = +1
Query: 13 HTVPIYEGYALPH-AILRLDLAGRDLTDYLMKDPHREGL 126
H + LP +ILR L GR D L DP R+G+
Sbjct: 606 HNFELLRKLVLPDGSILRARLPGRPTRDCLFADPARDGV 644
>At2g46440.1 68415.m05779 cyclic nucleotide-regulated ion channel,
putative (CNGC11) similar to cyclic nucleotide and
calmodulin-regulated ion channel (cngc3) GI:4581201 from
[Arabidopsis thaliana]
Length = 588
Score = 27.1 bits (57), Expect = 7.5
Identities = 13/54 (24%), Positives = 24/54 (44%), Gaps = 2/54 (3%)
Frame = -1
Query: 468 LSAIPGYMVVPPDMTVLA--YRSLRMSTSHFMMELYTVSWMPHDSIPRKEGWKR 313
L+ + G+++ D+ +A YR L M Y++ W + + WKR
Sbjct: 496 LTEVEGFVISADDLKFVATQYRRLHSKQLQHMFRFYSLQWQTWAACFIQAAWKR 549
>At2g06010.1 68415.m00657 expressed protein
Length = 188
Score = 27.1 bits (57), Expect = 7.5
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = -3
Query: 343 FHTQEGRLEESLGTTEPLVTDGDHL 269
F+ GRLE SL E +VT D+L
Sbjct: 164 FNMSSGRLEASLDRVEAIVTHSDYL 188
>At5g55100.2 68418.m06869 SWAP (Suppressor-of-White-APricot)/surp
domain-containing protein contains Pfam domain PF01805:
Surp module
Length = 844
Score = 26.6 bits (56), Expect = 9.9
Identities = 15/53 (28%), Positives = 22/53 (41%)
Frame = +1
Query: 349 RHPRDRVQLHHEVRRRHP*GPVRQHRHVRWYHHVPRYRRQDAEGDHRPRALDH 507
RH RD+ + + +HRH + Y D EG+HR R+ H
Sbjct: 672 RHSRDKHKHESSSDDEYHSRSRHRHRHSKSSDRHELYDSSDNEGEHRHRSSKH 724
>At5g55100.1 68418.m06868 SWAP (Suppressor-of-White-APricot)/surp
domain-containing protein contains Pfam domain PF01805:
Surp module
Length = 843
Score = 26.6 bits (56), Expect = 9.9
Identities = 15/53 (28%), Positives = 22/53 (41%)
Frame = +1
Query: 349 RHPRDRVQLHHEVRRRHP*GPVRQHRHVRWYHHVPRYRRQDAEGDHRPRALDH 507
RH RD+ + + +HRH + Y D EG+HR R+ H
Sbjct: 672 RHSRDKHKHESSSDDEYHSRSRHRHRHSKSSDRHELYDSSDNEGEHRHRSSKH 724
>At5g35830.1 68418.m04305 ankyrin repeat family protein contains
ankyrin repeats, Pfam:PF00023
Length = 282
Score = 26.6 bits (56), Expect = 9.9
Identities = 9/25 (36%), Positives = 17/25 (68%)
Frame = -3
Query: 190 DIAELLLDVTNDFPLSGGGERVTPL 116
+IA++L++ D P+ GG + TP+
Sbjct: 171 EIAKMLIEKNKDLPMIRGGGKTTPI 195
>At4g36980.1 68417.m05240 expressed protein
Length = 560
Score = 26.6 bits (56), Expect = 9.9
Identities = 13/24 (54%), Positives = 16/24 (66%)
Frame = +3
Query: 78 SRLDRLPHERSSPRGVTRSPPPLR 149
SRL R +RS R ++RSPPP R
Sbjct: 475 SRLSR-NRQRSRSRSISRSPPPRR 497
>At4g10290.1 68417.m01692 hypothetical protein
Length = 120
Score = 26.6 bits (56), Expect = 9.9
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = -1
Query: 405 LRMSTSHFMMELYTVSWMPHDSIPRKEGWK 316
+R ++ + EL SW +S+PRK WK
Sbjct: 23 MRQTSDAKLAELGVTSWQLWESMPRKFPWK 52
>At3g28790.1 68416.m03593 expressed protein
Length = 608
Score = 26.6 bits (56), Expect = 9.9
Identities = 11/18 (61%), Positives = 12/18 (66%)
Frame = +2
Query: 8 SPTPYPSTKVTLCPTPSS 61
SPTP PST PTPS+
Sbjct: 278 SPTPTPSTPTPSTPTPST 295
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,976,345
Number of Sequences: 28952
Number of extensions: 235694
Number of successful extensions: 866
Number of sequences better than 10.0: 44
Number of HSP's better than 10.0 without gapping: 771
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 858
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 937669760
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -