Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30174
         (314 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC959.08 |rpl2102|rpl21-2, rpl21|60S ribosomal protein L21|Sch...    99   8e-23
SPBC365.03c |rpl2101|rpl21, rpl21-1|60S ribosomal protein L21|Sc...   100   1e-22
SPAC5D6.02c |mug165||sequence orphan|Schizosaccharomyces pombe|c...    28   0.38 
SPAC7D4.12c |||DUF1212 family protein|Schizosaccharomyces pombe|...    26   1.5  
SPAC17A2.04c |||HSP chaperone complex subunit |Schizosaccharomyc...    25   2.7  
SPAC17G6.13 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   2.7  
SPCC191.05c |||nucleoside 2-deoxyribosyltransferase |Schizosacch...    25   3.6  
SPAC328.04 |||AAA family ATPase, unknown biological role|Schizos...    25   3.6  
SPBC1773.01 |||striatin homolog|Schizosaccharomyces pombe|chr 2|...    25   3.6  
SPBP35G2.13c |swc2||chromatin remodeling complex subunit Swc2 |S...    25   3.6  
SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces ...    25   3.6  
SPBC428.10 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    24   4.7  
SPAC25G10.04c |rec10|rec20|meiotic recombination protein Rec10 |...    24   6.3  
SPAC186.09 |||pyruvate decarboxylase |Schizosaccharomyces pombe|...    24   6.3  
SPCP25A2.02c |rhp26||SNF2 family helicase Rhp26|Schizosaccharomy...    24   6.3  
SPAPB24D3.09c |pdr1||ABC transporter Pdr1|Schizosaccharomyces po...    24   6.3  

>SPAC959.08 |rpl2102|rpl21-2, rpl21|60S ribosomal protein
           L21|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 160

 Score =   99 bits (238), Expect = 8e-23
 Identities = 46/71 (64%), Positives = 54/71 (76%), Gaps = 1/71 (1%)
 Frame = +3

Query: 6   ERINIRVEHVKHSKCRQDFLKRVKENERLLKEAKAAGKTVNLKRQPAPPKAAHIVS-GTE 182
           +R+N+R+EHVKHSKCRQDFL RVK NE   KEAKA GKTV L+RQPAPP  AH VS    
Sbjct: 87  KRVNVRIEHVKHSKCRQDFLDRVKANEAKRKEAKAQGKTVQLRRQPAPPATAHFVSTENN 146

Query: 183 KPVLLAPIPYE 215
           +PV L P+ Y+
Sbjct: 147 EPVTLHPVAYD 157


>SPBC365.03c |rpl2101|rpl21, rpl21-1|60S ribosomal protein
           L21|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 160

 Score = 99.5 bits (237), Expect = 1e-22
 Identities = 46/71 (64%), Positives = 54/71 (76%), Gaps = 1/71 (1%)
 Frame = +3

Query: 6   ERINIRVEHVKHSKCRQDFLKRVKENERLLKEAKAAGKTVNLKRQPAPPKAAHIVS-GTE 182
           +R+N+R+EHVKHSKCRQDFL RVK NE   KEAKA GKTV L+RQPAPP  AH VS    
Sbjct: 87  KRVNVRIEHVKHSKCRQDFLDRVKANEAKRKEAKAQGKTVQLRRQPAPPAKAHFVSTENN 146

Query: 183 KPVLLAPIPYE 215
           +PV L P+ Y+
Sbjct: 147 EPVTLHPVAYD 157


>SPAC5D6.02c |mug165||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 300

 Score = 27.9 bits (59), Expect = 0.38
 Identities = 17/63 (26%), Positives = 32/63 (50%)
 Frame = +1

Query: 1   IPNASISVLSMSSTPSADKTSLRESKRMRGY*RKPRLPARPST*RDSQLPLKLPTSSVEL 180
           +P+AS S  S++S+ S D  ++   +R R   RKP +  +P+  +  + P  + T   + 
Sbjct: 54  VPSASRSPESIASSQSNDSAAIPSYRRKRRKVRKPEI-VKPTLRKRGRKPKNISTLEHDK 112

Query: 181 RNP 189
             P
Sbjct: 113 SKP 115


>SPAC7D4.12c |||DUF1212 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 759

 Score = 25.8 bits (54), Expect = 1.5
 Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
 Frame = -1

Query: 188 GFLSSTDDVGSFRGSWLSLQVDGLAGSL-GFLQ 93
           GF S+T    SF+G W+ L +  + G L G LQ
Sbjct: 445 GFASATILPMSFQGGWIDLPIAFILGCLVGILQ 477


>SPAC17A2.04c |||HSP chaperone complex subunit |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 358

 Score = 25.0 bits (52), Expect = 2.7
 Identities = 14/32 (43%), Positives = 17/32 (53%)
 Frame = +3

Query: 45  KCRQDFLKRVKENERLLKEAKAAGKTVNLKRQ 140
           K   DF KR  E +R+ +E   A KTV L  Q
Sbjct: 181 KKSDDFEKRESEKKRVAQEKVIAAKTVLLALQ 212


>SPAC17G6.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 433

 Score = 25.0 bits (52), Expect = 2.7
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +3

Query: 99  EAKAAGKTVNLKRQPAPPKAAHIVSGT 179
           + KA  K  +  +QP+PP A H  + T
Sbjct: 344 DTKAGEKLTDSSKQPSPPVAEHFSNET 370


>SPCC191.05c |||nucleoside 2-deoxyribosyltransferase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 211

 Score = 24.6 bits (51), Expect = 3.6
 Identities = 13/27 (48%), Positives = 15/27 (55%)
 Frame = -1

Query: 119 LAGSLGFLQ*PLILFDSLKEVLSALGV 39
           LAG L F    + LFD LKE+    GV
Sbjct: 22  LAGDLVFRPNAIELFDELKEICKDAGV 48


>SPAC328.04 |||AAA family ATPase, unknown biological
           role|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 741

 Score = 24.6 bits (51), Expect = 3.6
 Identities = 10/15 (66%), Positives = 14/15 (93%)
 Frame = +1

Query: 28  SMSSTPSADKTSLRE 72
           SMSS+P+A +TSLR+
Sbjct: 163 SMSSSPTASRTSLRK 177


>SPBC1773.01 |||striatin homolog|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 612

 Score = 24.6 bits (51), Expect = 3.6
 Identities = 15/44 (34%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
 Frame = +3

Query: 66  KRVKENERLLK-EAKAAGKTVNLKRQPAPPKAAHIVSGTEKPVL 194
           K+ KE +  LK E+     T  +  QP P       SGTE  V+
Sbjct: 269 KKKKEQKWTLKFESDKGTSTQCITHQPLPGSTPSFASGTENGVI 312


>SPBP35G2.13c |swc2||chromatin remodeling complex subunit Swc2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 316

 Score = 24.6 bits (51), Expect = 3.6
 Identities = 12/41 (29%), Positives = 20/41 (48%)
 Frame = +3

Query: 66  KRVKENERLLKEAKAAGKTVNLKRQPAPPKAAHIVSGTEKP 188
           K +++ ER+ K      +  NL+R   PPK     + +E P
Sbjct: 83  KILRDEERIKKRKIQKNRAANLQRTLQPPKRPTPSAASEVP 123


>SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1427

 Score = 24.6 bits (51), Expect = 3.6
 Identities = 7/15 (46%), Positives = 13/15 (86%)
 Frame = -1

Query: 143  WLSLQVDGLAGSLGF 99
            WL+++ DG++G +GF
Sbjct: 1085 WLAIRTDGISGLVGF 1099


>SPBC428.10 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 751

 Score = 24.2 bits (50), Expect = 4.7
 Identities = 15/42 (35%), Positives = 21/42 (50%)
 Frame = +1

Query: 4   PNASISVLSMSSTPSADKTSLRESKRMRGY*RKPRLPARPST 129
           PNAS+    +  +PS   T+LR +       RK  + AR ST
Sbjct: 607 PNASLEQCFVQRSPSKMLTTLRNNSSTFPSLRKNAMIARKST 648


>SPAC25G10.04c |rec10|rec20|meiotic recombination protein Rec10
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 791

 Score = 23.8 bits (49), Expect = 6.3
 Identities = 18/52 (34%), Positives = 23/52 (44%)
 Frame = +3

Query: 51  RQDFLKRVKENERLLKEAKAAGKTVNLKRQPAPPKAAHIVSGTEKPVLLAPI 206
           +Q  LK   EN+    + K A   VNL+  P  P    I   T KP  +A I
Sbjct: 500 KQKSLKPDTENQESSVKNKKAKSNVNLQYSPKTP-ICKINDETLKPPTIANI 550


>SPAC186.09 |||pyruvate decarboxylase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 572

 Score = 23.8 bits (49), Expect = 6.3
 Identities = 12/21 (57%), Positives = 15/21 (71%)
 Frame = +3

Query: 138 QPAPPKAAHIVSGTEKPVLLA 200
           Q A   +A IV+G +KPVLLA
Sbjct: 207 QMAVDISAKIVNGKQKPVLLA 227


>SPCP25A2.02c |rhp26||SNF2 family helicase Rhp26|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 973

 Score = 23.8 bits (49), Expect = 6.3
 Identities = 15/39 (38%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
 Frame = +3

Query: 75   KENERLLKEA-KAAGKTVNLKRQPAPPKAAHIVSGTEKP 188
            KE  R+  EA +A        RQ  PP+ +  V GT KP
Sbjct: 918  KEATRVANEALRAVSSFRRPPRQLIPPQQSTNVPGTSKP 956


>SPAPB24D3.09c |pdr1||ABC transporter Pdr1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1396

 Score = 23.8 bits (49), Expect = 6.3
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = +3

Query: 36  KHSKCRQDFLKRVKENERLLKEAKAAGKT 122
           K++KC   F ++V+E   +L E    G+T
Sbjct: 17  KNTKCPDKFEQKVEEYLEVLNELHLTGRT 45


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,192,552
Number of Sequences: 5004
Number of extensions: 20133
Number of successful extensions: 72
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 72
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 72
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 83936266
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)