Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30173
         (516 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q3ZVU5 Cluster: Putative transcriptional regulator; n=2...    34   1.7  
UniRef50_A3XGE6 Cluster: Lipoyl synthase; n=1; Leeuwenhoekiella ...    32   6.8  
UniRef50_A3HXK2 Cluster: Putative uncharacterized protein; n=1; ...    32   6.8  
UniRef50_A6Q4Y4 Cluster: Ferredoxin--nitrite reductase; n=1; Nit...    32   8.9  
UniRef50_A3XNC9 Cluster: Phosphoenolpyruvate synthase; n=3; Flav...    32   8.9  
UniRef50_A1DIR1 Cluster: CAF1 family ribonuclease, putative; n=5...    32   8.9  

>UniRef50_Q3ZVU5 Cluster: Putative transcriptional regulator; n=2;
           Dehalococcoides|Rep: Putative transcriptional regulator
           - Dehalococcoides sp. (strain CBDB1)
          Length = 349

 Score = 34.3 bits (75), Expect = 1.7
 Identities = 23/58 (39%), Positives = 31/58 (53%), Gaps = 6/58 (10%)
 Frame = -2

Query: 368 ESGKKNSELRLQQ-----FQNNLGIQVPDDVR-CFFERRLSF*RDKGTAENKIKVPLL 213
           E GK+N   RL +     +QN  GIQV D  R C   +R S+ RD    E  +K+PL+
Sbjct: 25  EDGKQNCSARLLKVEHLLYQNPNGIQVKDIARLCQVSKRTSY-RDLNELETTLKIPLI 81


>UniRef50_A3XGE6 Cluster: Lipoyl synthase; n=1; Leeuwenhoekiella
           blandensis MED217|Rep: Lipoyl synthase -
           Leeuwenhoekiella blandensis MED217
          Length = 466

 Score = 32.3 bits (70), Expect = 6.8
 Identities = 22/69 (31%), Positives = 34/69 (49%), Gaps = 2/69 (2%)
 Frame = -3

Query: 445 YLYRSSDNRSL*D--FFRNTFCIGRSGRNLGKKTLNCAYNNFKITLEYKYRMMFVVSLND 272
           YL++SS N  L D  +F N F   ++ RNL    +  A  NF    +Y Y +      N+
Sbjct: 143 YLFKSSANLLLIDDMYFANRFA-NQAQRNLAIGVIGKASPNFYPMEDYFYMLKAYGKNNE 201

Query: 271 AFHFDETKE 245
            + +D+T E
Sbjct: 202 LYTYDDTSE 210


>UniRef50_A3HXK2 Cluster: Putative uncharacterized protein; n=1;
           Algoriphagus sp. PR1|Rep: Putative uncharacterized
           protein - Algoriphagus sp. PR1
          Length = 631

 Score = 32.3 bits (70), Expect = 6.8
 Identities = 12/23 (52%), Positives = 16/23 (69%)
 Frame = -3

Query: 277 NDAFHFDETKEQRKTKLKFRYCF 209
           ND FHFD+T   + TK++ RY F
Sbjct: 60  NDDFHFDKTTSAQATKIEIRYIF 82


>UniRef50_A6Q4Y4 Cluster: Ferredoxin--nitrite reductase; n=1;
           Nitratiruptor sp. SB155-2|Rep: Ferredoxin--nitrite
           reductase - Nitratiruptor sp. (strain SB155-2)
          Length = 632

 Score = 31.9 bits (69), Expect = 8.9
 Identities = 15/52 (28%), Positives = 31/52 (59%)
 Frame = -2

Query: 299 DDVRCFFERRLSF*RDKGTAENKIKVPLLFFLKAISLPSKTDSIRCFSMKLL 144
           D+V  F+E+ ++F +  G  +N+ K  L F ++A+ + +  +++  FS K L
Sbjct: 240 DEVVPFYEKLINFYKTYGFRDNRNKNRLYFLIEAVGMDAFREALEKFSQKEL 291


>UniRef50_A3XNC9 Cluster: Phosphoenolpyruvate synthase; n=3;
           Flavobacteriaceae|Rep: Phosphoenolpyruvate synthase -
           Leeuwenhoekiella blandensis MED217
          Length = 969

 Score = 31.9 bits (69), Expect = 8.9
 Identities = 14/48 (29%), Positives = 26/48 (54%)
 Frame = +1

Query: 172 LSVFEGKEIAFKKNSNGTLILFSAVPLSRQNERRRSKKQRTSSGTCIP 315
           L  F GK++ +  +S GT+IL  A  ++ + +   S ++R  S   +P
Sbjct: 550 LEAFNGKDVFYAVSSKGTVILKLAAAMTSEEQALFSTEERNQSKIAVP 597


>UniRef50_A1DIR1 Cluster: CAF1 family ribonuclease, putative; n=5;
           Trichocomaceae|Rep: CAF1 family ribonuclease, putative -
           Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / NRRL
           181)(Aspergillus fischerianus (strain ATCC 1020 / DSM
           3700 / NRRL 181))
          Length = 581

 Score = 31.9 bits (69), Expect = 8.9
 Identities = 15/44 (34%), Positives = 23/44 (52%)
 Frame = +2

Query: 278 QRNNEHHPVLVFQGYFEIVVSAIQSFFSQIPSRSTNTKSVPKEI 409
           QR  EH PVLV    F  ++   + FF  +PS+    +S+  E+
Sbjct: 316 QRLKEHRPVLVGHNLFSDLIYFCRCFFGPLPSKVEEFQSMAHEL 359


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 475,328,191
Number of Sequences: 1657284
Number of extensions: 8982873
Number of successful extensions: 21366
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 20891
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21361
length of database: 575,637,011
effective HSP length: 95
effective length of database: 418,195,031
effective search space used: 31782822356
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)