Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30173
         (516 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface pro...    24   0.70 
AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc fin...    22   2.8  
DQ659247-1|ABG47445.1|  980|Tribolium castaneum chitinase 7 prot...    21   4.9  
AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.        21   6.5  

>AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface
           protein chaoptin protein.
          Length = 782

 Score = 24.2 bits (50), Expect = 0.70
 Identities = 13/45 (28%), Positives = 22/45 (48%)
 Frame = -1

Query: 462 PCYRRVTYIGAQITDPFRISLGTLFVLVDLEGIWEKKL*IALTTI 328
           P   RV+ +   I     + LGT  V + + G+W K L + L+ +
Sbjct: 730 PVLLRVSILRNIIVGTLMMVLGTGCVRIKITGVWLKFLRVILSVV 774


>AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc finger
           protein protein.
          Length = 456

 Score = 22.2 bits (45), Expect = 2.8
 Identities = 10/32 (31%), Positives = 19/32 (59%)
 Frame = +2

Query: 326 EIVVSAIQSFFSQIPSRSTNTKSVPKEILKGS 421
           ++  +A Q + +QIP+ S N K+     L+G+
Sbjct: 4   DMTPTAGQLYGAQIPAMSMNVKAAEHPSLRGT 35


>DQ659247-1|ABG47445.1|  980|Tribolium castaneum chitinase 7
           protein.
          Length = 980

 Score = 21.4 bits (43), Expect = 4.9
 Identities = 8/23 (34%), Positives = 16/23 (69%)
 Frame = -1

Query: 159 FYEIAEIVSNFFSYIFLDTSIKI 91
           +YE+ E++ N  +YI+ D  +K+
Sbjct: 370 YYEVCELLQNGATYIW-DDEMKV 391


>AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.
          Length = 556

 Score = 21.0 bits (42), Expect = 6.5
 Identities = 8/17 (47%), Positives = 9/17 (52%)
 Frame = +3

Query: 153 HRKTPNTIGLRGQRNCF 203
           HR  P +I L   R CF
Sbjct: 192 HRNQPTSIDLNAVRLCF 208


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 115,948
Number of Sequences: 336
Number of extensions: 2454
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 12363686
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)