Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30173
         (516 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC21.07c |ppk24||serine/threonine protein kinase Ppk24|Schizos...    27   1.7  
SPBC56F2.08c |||RNA-binding protein|Schizosaccharomyces pombe|ch...    27   2.2  
SPBC651.10 |nse5||Smc5-6 complex non-SMC subunit Nse5|Schizosacc...    27   2.2  
SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related prote...    26   3.8  
SPAC3H1.02c |||metallopeptidase|Schizosaccharomyces pombe|chr 1|...    25   5.1  

>SPBC21.07c |ppk24||serine/threonine protein kinase
           Ppk24|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 461

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 19/54 (35%), Positives = 26/54 (48%)
 Frame = +2

Query: 275 VQRNNEHHPVLVFQGYFEIVVSAIQSFFSQIPSRSTNTKSVPKEILKGSVI*AP 436
           +QRN+E+   L  +  F         FFS   S+ST  KS    ++K S I AP
Sbjct: 19  IQRNSENKNSLSIENIFGRFPKEFFQFFSINVSKSTTKKS--SVVIKPSTITAP 70


>SPBC56F2.08c |||RNA-binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 661

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +1

Query: 415 GIGYLSSYISNPSIARYFTTRFHSKTKRKILLQH 516
           G  ++   I+ PSI R F  +FH   KR ++  H
Sbjct: 431 GPSFIHKVITYPSIGREFLAQFHLVIKRVLINIH 464


>SPBC651.10 |nse5||Smc5-6 complex non-SMC subunit
           Nse5|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 388

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = -3

Query: 292 FVVSLNDAFHFDETKEQRKTKL 227
           FVV L DAFHF    ++R +KL
Sbjct: 233 FVVHLTDAFHFLSKLDERFSKL 254


>SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 592

 Score = 25.8 bits (54), Expect = 3.8
 Identities = 19/67 (28%), Positives = 35/67 (52%)
 Frame = +1

Query: 124 KEITDYLSNFIEKHLILSVFEGKEIAFKKNSNGTLILFSAVPLSRQNERRRSKKQRTSSG 303
           K+  D  SN I+    LS+ +  E AF+  +NG + + ++     Q E+++ KKQ  +  
Sbjct: 108 KDPLDESSNGIKN---LSLNKNDEPAFQ--TNGEVKMKNSSESDNQPEKKKIKKQNPTDL 162

Query: 304 TCIPRLF 324
             +P +F
Sbjct: 163 VSVPEIF 169


>SPAC3H1.02c |||metallopeptidase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1036

 Score = 25.4 bits (53), Expect = 5.1
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = +1

Query: 337 KRNSEFFFPDSFQIYQYKKCS 399
           KR++EF  P  F I  Y  CS
Sbjct: 689 KRDAEFILPSYFDIRLYNDCS 709


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,094,867
Number of Sequences: 5004
Number of extensions: 42482
Number of successful extensions: 118
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 118
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)