Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30173
         (516 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_5387| Best HMM Match : DNA_pol_E_B (HMM E-Value=9.2e-35)            29   3.0  
SB_28061| Best HMM Match : 7tm_1 (HMM E-Value=4.8e-17)                 28   5.3  
SB_3357| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   5.3  
SB_35691| Best HMM Match : 7tm_1 (HMM E-Value=8.1e-07)                 28   5.3  
SB_145| Best HMM Match : OATP (HMM E-Value=4.2)                        27   9.2  

>SB_5387| Best HMM Match : DNA_pol_E_B (HMM E-Value=9.2e-35)
          Length = 458

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 15/58 (25%), Positives = 27/58 (46%)
 Frame = +1

Query: 205 KKNSNGTLILFSAVPLSRQNERRRSKKQRTSSGTCIPRLF*NCCKRNSEFFFPDSFQI 378
           ++N +   ++ S V L +     + +   T   T  P LF  C   NS+ + PD ++I
Sbjct: 277 RENKDAMFVIMSDVHLDQPRVMEKLRTLLTGYSTMPPSLFILCGNFNSQPYGPDQYKI 334


>SB_28061| Best HMM Match : 7tm_1 (HMM E-Value=4.8e-17)
          Length = 384

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
 Frame = +1

Query: 1   VIKSLKKSFFKMSIEKL-PLRWQSYITTLGAYFD 99
           V++ LK SF K  ++ L PL W   +   G YFD
Sbjct: 148 VMQPLKISFLKSHVQMLLPLTWVIAVIMHGVYFD 181


>SB_3357| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1228

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 14/50 (28%), Positives = 23/50 (46%)
 Frame = +1

Query: 142 LSNFIEKHLILSVFEGKEIAFKKNSNGTLILFSAVPLSRQNERRRSKKQR 291
           +  F +  L     +G  I +   +   +  F  +PLSR +   RSK+QR
Sbjct: 609 MEEFGDSALFAGTSDGNIIMWNLQTEKIITRFDLLPLSRSSRSGRSKRQR 658


>SB_35691| Best HMM Match : 7tm_1 (HMM E-Value=8.1e-07)
          Length = 289

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
 Frame = +1

Query: 1   VIKSLKKSFFKMSIEKL-PLRWQSYITTLGAYFD 99
           V++ LK SF K  ++ L PL W   +   G YFD
Sbjct: 37  VMQPLKISFLKSHVQMLLPLTWVIAVIMHGVYFD 70


>SB_145| Best HMM Match : OATP (HMM E-Value=4.2)
          Length = 264

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 10/26 (38%), Positives = 19/26 (73%)
 Frame = +2

Query: 332 VVSAIQSFFSQIPSRSTNTKSVPKEI 409
           +VS + +F +QIPS+  + +SVP ++
Sbjct: 106 IVSIVLAFSNQIPSKLVSLRSVPDDL 131


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,493,391
Number of Sequences: 59808
Number of extensions: 270080
Number of successful extensions: 525
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 493
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 525
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1148326654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)