Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30173
         (516 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U58727-4|AAB00584.2|  148|Caenorhabditis elegans Hypothetical pr...    31   0.37 
AC006747-1|AAF60509.1|  311|Caenorhabditis elegans Hypothetical ...    30   0.85 
Z75554-9|CAA99952.2|  278|Caenorhabditis elegans Hypothetical pr...    29   2.6  
Z82075-1|CAB04930.1|  320|Caenorhabditis elegans Hypothetical pr...    27   6.0  
U88308-11|AAB42321.1|  154|Caenorhabditis elegans Hypothetical p...    27   8.0  
AF022985-4|AAB69965.1|  362|Caenorhabditis elegans Hypothetical ...    27   8.0  

>U58727-4|AAB00584.2|  148|Caenorhabditis elegans Hypothetical
           protein D1005.5 protein.
          Length = 148

 Score = 31.5 bits (68), Expect = 0.37
 Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
 Frame = -3

Query: 331 NFKITLEYKYRMMFVVSLNDA--FHFDETKEQRKTKLKFRYCFF*KQFLCPRRPI 173
           N KI   ++ R+   VS N+   +H  ET+  R  ++  + CFF     CP   +
Sbjct: 73  NLKIPKVHQNRVKKCVSFNNGSLYHVSETESLRTLRVDIKKCFFENLTFCPHAAV 127


>AC006747-1|AAF60509.1|  311|Caenorhabditis elegans Hypothetical
           protein Y39A3A.1 protein.
          Length = 311

 Score = 30.3 bits (65), Expect = 0.85
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = +1

Query: 10  SLKKSFFKMSIEKLPLRWQSYITTLGAY 93
           S  + F+   I +LPLRWQ  I T G Y
Sbjct: 281 SKSQEFYAEGIAQLPLRWQEVIDTNGEY 308


>Z75554-9|CAA99952.2|  278|Caenorhabditis elegans Hypothetical
           protein ZC455.11 protein.
          Length = 278

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = -1

Query: 165 VFFYEIAEIVSNFFSYIFLDTSIKIC 88
           ++FY   + +SNF  YIFL T+  +C
Sbjct: 116 IYFYNYRKTISNFPIYIFLITTSIVC 141


>Z82075-1|CAB04930.1|  320|Caenorhabditis elegans Hypothetical
           protein W07A8.1 protein.
          Length = 320

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 17/45 (37%), Positives = 24/45 (53%)
 Frame = -3

Query: 355 KTLNCAYNNFKITLEYKYRMMFVVSLNDAFHFDETKEQRKTKLKF 221
           ++ N A   F+ T+ Y  R++ V SLN   +F  TK  R   LKF
Sbjct: 257 ESFNSAPFEFQ-TITYSLRLLAVGSLNFCVYFVLTKSTRAMVLKF 300


>U88308-11|AAB42321.1|  154|Caenorhabditis elegans Hypothetical
           protein C32E8.1 protein.
          Length = 154

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 13/42 (30%), Positives = 20/42 (47%)
 Frame = -2

Query: 374 WKESGKKNSELRLQQFQNNLGIQVPDDVRCFFERRLSF*RDK 249
           W+E        RLQ     L +Q+ D V CF E + +  ++K
Sbjct: 27  WEEQQLMKKVKRLQSENEKLKVQLDDMVDCFVETKEALEKEK 68


>AF022985-4|AAB69965.1|  362|Caenorhabditis elegans Hypothetical
           protein T15B7.12 protein.
          Length = 362

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 14/34 (41%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
 Frame = +3

Query: 312 SKVILKLL*AQFR-VFFPRFLPDLPIQKVFLKKS 410
           S +I   L A+FR +F   FLP   ++K++LK+S
Sbjct: 315 SFIIYSSLSAKFRRIFAQLFLPSQVLEKIYLKRS 348


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,287,038
Number of Sequences: 27780
Number of extensions: 228645
Number of successful extensions: 559
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 547
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 559
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 996506972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)