Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30173
         (516 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase doma...    24   0.81 
DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated...    21   7.5  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    21   10.0 
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    21   10.0 
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     21   10.0 
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       21   10.0 

>DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase domain
           protein protein.
          Length = 448

 Score = 24.2 bits (50), Expect = 0.81
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -3

Query: 379 RSGRNLGKKTLNCAYNNFKITLEY 308
           R  RNLG+KT+   YN   ++ +Y
Sbjct: 405 RELRNLGRKTIMVNYNPETVSTDY 428


>DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 391

 Score = 21.0 bits (42), Expect = 7.5
 Identities = 10/31 (32%), Positives = 19/31 (61%)
 Frame = -2

Query: 122 LIYF*IHQSKYAPKVVM*LCQRSGNFSMLIL 30
           L+ + I +   A + V  + ++SGNFS L++
Sbjct: 161 LLQYDIGKPVVAEETVDYMLEKSGNFSRLVV 191


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 20.6 bits (41), Expect = 10.0
 Identities = 7/15 (46%), Positives = 9/15 (60%)
 Frame = +3

Query: 159 KTPNTIGLRGQRNCF 203
           K PNT+GL+     F
Sbjct: 813 KAPNTLGLKNMAGVF 827


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 20.6 bits (41), Expect = 10.0
 Identities = 7/17 (41%), Positives = 10/17 (58%)
 Frame = +3

Query: 153 HRKTPNTIGLRGQRNCF 203
           H++ P +I L   R CF
Sbjct: 174 HKRQPTSIDLNAVRLCF 190


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 20.6 bits (41), Expect = 10.0
 Identities = 7/17 (41%), Positives = 10/17 (58%)
 Frame = +3

Query: 153 HRKTPNTIGLRGQRNCF 203
           H++ P +I L   R CF
Sbjct: 174 HKRQPTSIDLNAVRLCF 190


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 20.6 bits (41), Expect = 10.0
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = -2

Query: 368 ESGKKNSELRLQQFQNNLGIQV 303
           E G+K  E  +QQ Q  L + V
Sbjct: 136 ELGRKKLEQAIQQLQEQLQLNV 157


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 140,463
Number of Sequences: 438
Number of extensions: 3311
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14354847
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)