Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30172
         (516 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    73   2e-15
EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          23   1.4  
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      23   1.4  
AF134821-1|AAD40236.1|  226|Apis mellifera hexamerin protein.          23   1.4  
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    22   4.3  
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    21   10.0 

>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 72.9 bits (171), Expect = 2e-15
 Identities = 51/160 (31%), Positives = 80/160 (50%), Gaps = 4/160 (2%)
 Frame = +1

Query: 49  VEKILGFKYENGKEYFHVKWKGWSDSENTWEPIENLDNCPAIIKNFLDEEETRFCVKIQK 228
           VE+IL  K   G   + +KWK W    NTWEPI NL NC  I++ F   E  R  + ++ 
Sbjct: 246 VEQILAKKEIKGVPTYLIKWKNWDLKYNTWEPISNLINCSDILEEF---ERNRLQL-LES 301

Query: 229 LKEEISFGNLLEDNNLIERFTEF---EDADLSKIKENLQLKFLSIL-FLTEKEEHCGATL 396
            K +++F     +N  IE+F  +       L+ I       F++IL FL +K        
Sbjct: 302 FKRKVNF---YPNNQDIEKFLNYLKRGGKTLTSISVESNTMFINILKFLKQKYVKNSKLE 358

Query: 397 VEETRDILQLYVLVRKRCKQLMQLKEWEDHLNQVDKSKKI 516
                DIL++ +++  R KQL  L++WE+ +N + K K +
Sbjct: 359 KVIKHDILRM-LIIDLRKKQLKSLEDWENEMNIITKGKPL 397


>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 23.4 bits (48), Expect = 1.4
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = +1

Query: 40  EYIVEKILGFKYENGKEY 93
           + +V K+LGF YE+  +Y
Sbjct: 381 DLLVRKVLGFGYESNVKY 398


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 23.4 bits (48), Expect = 1.4
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = +1

Query: 40  EYIVEKILGFKYENGKEY 93
           + +V K+LGF YE+  +Y
Sbjct: 381 DLLVRKVLGFGYESNVKY 398


>AF134821-1|AAD40236.1|  226|Apis mellifera hexamerin protein.
          Length = 226

 Score = 23.4 bits (48), Expect = 1.4
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = +1

Query: 40 EYIVEKILGFKYENGKEY 93
          + +V K+LGF YE+  +Y
Sbjct: 7  DLLVRKVLGFGYESNVKY 24


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 21.8 bits (44), Expect = 4.3
 Identities = 7/17 (41%), Positives = 10/17 (58%)
 Frame = +3

Query: 207 ILC*NTKTQRRNLIWQP 257
           I+C N K Q+  + W P
Sbjct: 672 IICINIKRQKEKIEWDP 688


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 20.6 bits (41), Expect = 10.0
 Identities = 12/48 (25%), Positives = 21/48 (43%)
 Frame = -2

Query: 317 LLRSASSNSVNLSMRLLSSKRLPNEISSLSFCILTQNLVSSSSKKFFI 174
           LLR +    +  SMRL    + P E+ +      +  L+  S K  ++
Sbjct: 141 LLRISQDGDILYSMRLTIKAKCPMELRNFPMDRQSCPLILGSCKCIYV 188


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.317    0.136    0.402 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 138,593
Number of Sequences: 438
Number of extensions: 2963
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14354847
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)