BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= epV30172 (516 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At5g17690.1 68418.m02073 like heterochromatin protein (LHP1) ide... 50 9e-07 At1g69770.1 68414.m08028 chromomethylase 3 (CMT3) nearly identic... 46 1e-05 At4g19020.1 68417.m02803 chromomethylase 2 (CMT2) nearly identic... 44 8e-05 At1g80740.1 68414.m09473 chromomethylase 1 (CMT1) identical to c... 41 6e-04 At3g22790.1 68416.m02873 kinase interacting family protein simil... 35 0.037 At4g14820.1 68417.m02279 pentatricopeptide (PPR) repeat-containi... 31 0.61 At2g47450.1 68415.m05922 chloroplast signal recognition particle... 30 0.80 At5g18440.1 68418.m02172 hypothetical protein 28 3.2 At4g30990.1 68417.m04398 expressed protein ; expression supporte... 28 3.2 At3g23100.1 68416.m02912 double strand break repair protein, put... 28 3.2 At1g61410.1 68414.m06920 tolA protein-related contains weak simi... 28 3.2 At5g45900.1 68418.m05645 autophagy 7 (APG7) nearly identical to ... 28 4.3 At5g45050.2 68418.m05524 disease resistance protein-related simi... 28 4.3 At5g45050.1 68418.m05523 disease resistance protein-related simi... 28 4.3 At5g16860.1 68418.m01975 pentatricopeptide (PPR) repeat-containi... 28 4.3 At4g20770.1 68417.m03016 pentatricopeptide (PPR) repeat-containi... 27 5.7 At3g48910.1 68416.m05343 expressed protein 27 5.7 At3g29580.1 68416.m03717 hypothetical protein weak similarity to... 27 5.7 At5g44800.1 68418.m05492 chromodomain-helicase-DNA-binding famil... 27 7.5 At5g20710.1 68418.m02459 beta-galactosidase, putative / lactase,... 27 7.5 At5g14990.1 68418.m01758 hypothetical protein 27 7.5 At2g42200.2 68415.m05223 squamosa promoter-binding protein-like ... 27 7.5 At2g25170.1 68415.m03010 chromatin remodeling factor CHD3 (PICKL... 27 7.5 At1g22060.1 68414.m02759 expressed protein 27 7.5 At1g04960.1 68414.m00494 expressed protein 27 7.5 At5g55650.1 68418.m06939 hypothetical protein 27 9.9 At3g54570.1 68416.m06038 calmodulin-binding protein-related cont... 27 9.9 At3g54070.1 68416.m05978 ankyrin repeat family protein contains ... 27 9.9 At1g31740.1 68414.m03894 beta-galactosidase, putative / lactase,... 27 9.9 At1g30270.1 68414.m03702 CBL-interacting protein kinase 23 (CIPK... 27 9.9 >At5g17690.1 68418.m02073 like heterochromatin protein (LHP1) identical to like heterochromatin protein LHP1 [Arabidopsis thaliana] GI:15625407; contains Pfam profile PF00385: 'chromo' (CHRromatin Organization MOdifier) Length = 445 Score = 50.0 bits (114), Expect = 9e-07 Identities = 19/48 (39%), Positives = 29/48 (60%) Frame = +1 Query: 43 YIVEKILGFKYENGKEYFHVKWKGWSDSENTWEPIENLDNCPAIIKNF 186 Y +E I + GK + +KW+GW ++ NTWEP+ENL + +I F Sbjct: 108 YEIEAIRRKRVRKGKVQYLIKWRGWPETANTWEPLENLQSIADVIDAF 155 >At1g69770.1 68414.m08028 chromomethylase 3 (CMT3) nearly identical to chromomethylase CMT3 [Arabidopsis thaliana] GI:14583092, GI:14647157 Length = 839 Score = 46.4 bits (105), Expect = 1e-05 Identities = 22/57 (38%), Positives = 32/57 (56%), Gaps = 6/57 (10%) Frame = +1 Query: 37 EEYIVEKILGFKYENGKE------YFHVKWKGWSDSENTWEPIENLDNCPAIIKNFL 189 E + V+KI+G + K+ Y V+W + DS +TWEPIE L NC I+ F+ Sbjct: 380 EVFTVDKIVGISFGVPKKLLKRGLYLKVRWLNYDDSHDTWEPIEGLSNCRGKIEEFV 436 >At4g19020.1 68417.m02803 chromomethylase 2 (CMT2) nearly identical to chromomethylase CMT2 [Arabidopsis thaliana] GI:14583094 Length = 1295 Score = 43.6 bits (98), Expect = 8e-05 Identities = 23/58 (39%), Positives = 32/58 (55%), Gaps = 6/58 (10%) Frame = +1 Query: 34 AEEYIVEKILGFKY----ENGKE--YFHVKWKGWSDSENTWEPIENLDNCPAIIKNFL 189 +EEY VEK++ + + GK F V WKG+ E+TWE E L NC I+ F+ Sbjct: 834 SEEYEVEKLVDICFGDHDKTGKNGLKFKVHWKGYRSDEDTWELAEELSNCQDAIREFV 891 >At1g80740.1 68414.m09473 chromomethylase 1 (CMT1) identical to chromomethylase GB:AAC02660 GI:2865416 from [Arabidopsis thaliana] Length = 791 Score = 40.7 bits (91), Expect = 6e-04 Identities = 20/56 (35%), Positives = 32/56 (57%), Gaps = 6/56 (10%) Frame = +1 Query: 40 EYIVEKILGFKYEN----GKEYFH--VKWKGWSDSENTWEPIENLDNCPAIIKNFL 189 E+ VEK LG + + G++ V+WKG++ S +TWEP L NC +K ++ Sbjct: 338 EFEVEKFLGIMFGDPQGTGEKTLQLMVRWKGYNSSYDTWEPYSGLGNCKEKLKEYV 393 >At3g22790.1 68416.m02873 kinase interacting family protein similar to kinase interacting protein 1 (GI:13936326) [Petunia integrifolia] Length = 1694 Score = 34.7 bits (76), Expect = 0.037 Identities = 26/80 (32%), Positives = 44/80 (55%), Gaps = 6/80 (7%) Frame = +1 Query: 274 LIERFTEFED--ADLSKIKE--NLQLKFLSILFLTEKEEHCGATLVEETR--DILQLYVL 435 L ++FTE E ADL + K+ NLQ++ L + TEK+E +TR D+ Sbjct: 742 LEKKFTELEGKYADLQREKQFKNLQVEELRVSLATEKQERASYERSTDTRLADLQNNVSF 801 Query: 436 VRKRCKQLMQLKEWEDHLNQ 495 +R+ C+ + KE+E+ L++ Sbjct: 802 LREECRS--RKKEFEEELDR 819 >At4g14820.1 68417.m02279 pentatricopeptide (PPR) repeat-containing protein contains Pfam profile PF01535: PPR repeat Length = 722 Score = 30.7 bits (66), Expect = 0.61 Identities = 29/108 (26%), Positives = 49/108 (45%) Frame = -2 Query: 434 NTYNCRISLVSSTSVAPQCSSFSVKNSIDKNFNCKFSFILLRSASSNSVNLSMRLLSSKR 255 NT ++S S + Q + ++ I+ N SF+ S SS+S+NLS L Sbjct: 13 NTILEKLSFCKSLNHIKQLHAHILRTVINHKLN---SFLFNLSVSSSSINLSYALNVFSS 69 Query: 254 LPNEISSLSFCILTQNLVSSSSKKFFIIAGQLSRFSIGSQVFSLSDHP 111 +P+ S+ F ++L SS + I+ Q R +G ++ S P Sbjct: 70 IPSPPESIVFNPFLRDLSRSSEPRATILFYQRIR-HVGGRLDQFSFLP 116 >At2g47450.1 68415.m05922 chloroplast signal recognition particle component (CAO) nearly identical to CAO [Arabidopsis thaliana] GI:4102582 Length = 373 Score = 30.3 bits (65), Expect = 0.80 Identities = 20/45 (44%), Positives = 29/45 (64%), Gaps = 4/45 (8%) Frame = +1 Query: 40 EYIV-EKILGFKY-ENGK--EYFHVKWKGWSDSENTWEPIENLDN 162 EY V E ++G + ++GK EY VKW SD+ TWEP +N+D+ Sbjct: 318 EYAVAESVIGKRVGDDGKTIEYL-VKWTDMSDA--TWEPQDNVDS 359 >At5g18440.1 68418.m02172 hypothetical protein Length = 451 Score = 28.3 bits (60), Expect = 3.2 Identities = 15/49 (30%), Positives = 24/49 (48%) Frame = -2 Query: 254 LPNEISSLSFCILTQNLVSSSSKKFFIIAGQLSRFSIGSQVFSLSDHPF 108 LPN + +L F + NL+ S FF + + FS Q+ S + P+ Sbjct: 83 LPNLLGNLQFAVANSNLMGHSLPNFFQPSLEPHAFSSRPQLNSFNSLPY 131 >At4g30990.1 68417.m04398 expressed protein ; expression supported by MPSS Length = 2138 Score = 28.3 bits (60), Expect = 3.2 Identities = 22/73 (30%), Positives = 33/73 (45%) Frame = -2 Query: 398 TSVAPQCSSFSVKNSIDKNFNCKFSFILLRSASSNSVNLSMRLLSSKRLPNEISSLSFCI 219 ++V+P SF + S + + FS L S S N VNL L + L +I S+ Sbjct: 1115 SAVSPLIKSFKQEGSSSEKPSSLFSCFLSMSKSRNLVNL---LCREESLVPDIFSILTVT 1171 Query: 218 LTQNLVSSSSKKF 180 + SS+ KF Sbjct: 1172 TASEAIKSSALKF 1184 >At3g23100.1 68416.m02912 double strand break repair protein, putative (XRCC4) identical to cDNA putative double strand break repair protein (XRCC4) GI:9800642 Length = 264 Score = 28.3 bits (60), Expect = 3.2 Identities = 21/76 (27%), Positives = 31/76 (40%) Frame = +1 Query: 187 LDEEETRFCVKIQKLKEEISFGNLLEDNNLIERFTEFEDADLSKIKENLQLKFLSILFLT 366 L EE +K++ E L + L + TEFE A +K L K + L Sbjct: 153 LSEEVVNKTRSFEKMRSEAE-RCLAQGEKLCDEKTEFESATYAKFLSVLNAKKAKLRALR 211 Query: 367 EKEEHCGATLVEETRD 414 +KE+ EE+ D Sbjct: 212 DKEDSVRVVEEEESTD 227 >At1g61410.1 68414.m06920 tolA protein-related contains weak similarity to Swiss-Prot:P19934 TolA protein [Escherichia coli] Length = 118 Score = 28.3 bits (60), Expect = 3.2 Identities = 21/74 (28%), Positives = 32/74 (43%) Frame = +1 Query: 187 LDEEETRFCVKIQKLKEEISFGNLLEDNNLIERFTEFEDADLSKIKENLQLKFLSILFLT 366 L EE +K+K E L + L + TEFE+A +K L K + + Sbjct: 7 LSEEVVNKTRSFEKMKSEAE-RCLAQGEKLCDEKTEFENATYAKFLSVLNAKKAKLRAVR 65 Query: 367 EKEEHCGATLVEET 408 +KE+ A EE+ Sbjct: 66 DKEDSVRAVEEEES 79 >At5g45900.1 68418.m05645 autophagy 7 (APG7) nearly identical to autophagy 7 [Arabidopsis thaliana] GI:19912147; contains Pfam profile PF00899: ThiF family Length = 697 Score = 27.9 bits (59), Expect = 4.3 Identities = 13/42 (30%), Positives = 23/42 (54%) Frame = +1 Query: 193 EEETRFCVKIQKLKEEISFGNLLEDNNLIERFTEFEDADLSK 318 ++++ + K+ E+I G LED +++ RF ADL K Sbjct: 106 DKQSLLKAEANKIWEDIQSGKALEDPSVLPRFLVISFADLKK 147 >At5g45050.2 68418.m05524 disease resistance protein-related similar to NL27 [Solanum tuberosum] GI:3947735; contains Pfam profiles PF03106: WRKY DNA -binding domain, PF00931: NB-ARC domain, PF00560: Leucine Rich Repeat Length = 1344 Score = 27.9 bits (59), Expect = 4.3 Identities = 14/30 (46%), Positives = 18/30 (60%) Frame = +1 Query: 262 EDNNLIERFTEFEDADLSKIKENLQLKFLS 351 ED + E F E AD+ K++EN Q FLS Sbjct: 1285 EDTFIPELFPEDTFADMDKLEENSQTMFLS 1314 >At5g45050.1 68418.m05523 disease resistance protein-related similar to NL27 [Solanum tuberosum] GI:3947735; contains Pfam profiles PF03106: WRKY DNA -binding domain, PF00931: NB-ARC domain, PF00560: Leucine Rich Repeat Length = 1372 Score = 27.9 bits (59), Expect = 4.3 Identities = 14/30 (46%), Positives = 18/30 (60%) Frame = +1 Query: 262 EDNNLIERFTEFEDADLSKIKENLQLKFLS 351 ED + E F E AD+ K++EN Q FLS Sbjct: 1313 EDTFIPELFPEDTFADMDKLEENSQTMFLS 1342 >At5g16860.1 68418.m01975 pentatricopeptide (PPR) repeat-containing protein contains Pfam profile PF01535: PPR repeat Length = 850 Score = 27.9 bits (59), Expect = 4.3 Identities = 11/36 (30%), Positives = 20/36 (55%) Frame = -2 Query: 440 LTNTYNCRISLVSSTSVAPQCSSFSVKNSIDKNFNC 333 +TN + CR ++ +V P C+S +S+ K +C Sbjct: 219 MTNEFGCRPDNITLVNVLPPCASLGT-HSLGKQLHC 253 >At4g20770.1 68417.m03016 pentatricopeptide (PPR) repeat-containing protein contains Pfam profile PF01535: PPR repeat Length = 740 Score = 27.5 bits (58), Expect = 5.7 Identities = 13/49 (26%), Positives = 24/49 (48%) Frame = -2 Query: 383 QCSSFSVKNSIDKNFNCKFSFILLRSASSNSVNLSMRLLSSKRLPNEIS 237 +C +VK +DKN + + + + V+ +R+ S PNE+S Sbjct: 125 RCHGVAVKTGLDKNIFVGNALLSMYAKCGFIVDYGVRVFESLSQPNEVS 173 >At3g48910.1 68416.m05343 expressed protein Length = 224 Score = 27.5 bits (58), Expect = 5.7 Identities = 21/94 (22%), Positives = 43/94 (45%), Gaps = 1/94 (1%) Frame = +1 Query: 37 EEYIVEKILGFKYENGKEYFHVKWKGWSDSENTWEPIENLDN-CPAIIKNFLDEEETRFC 213 E+ V +I+ + G+E F V W E++ P + ++ CP I F ++ + Sbjct: 3 EKCPVSEIIKTRKVQGRECFEVSWNDLEGLESSIVPADLVERACPEKIIEFKEKMAAKKK 62 Query: 214 VKIQKLKEEISFGNLLEDNNLIERFTEFEDADLS 315 K K++ + + ++L+E E + DL+ Sbjct: 63 KPKPKQKQK-ETSSPTKSSSLVELSLELQHLDLN 95 >At3g29580.1 68416.m03717 hypothetical protein weak similarity to ubiquitin-specific protease 12 [Arabidopsis thaliana] GI:11993471 Length = 306 Score = 27.5 bits (58), Expect = 5.7 Identities = 15/46 (32%), Positives = 27/46 (58%) Frame = +2 Query: 179 KIFWMKKKLDSVLKYKNSKKKSHLATS*KIIISLKDLLNLKMQISA 316 K+ W++KKL+ VL+ K K++S+ +I +KDL + + A Sbjct: 254 KLDWLEKKLNEVLE-KKEKEESYETRMREIEEEMKDLKAKALDVGA 298 >At5g44800.1 68418.m05492 chromodomain-helicase-DNA-binding family protein / CHD family protein similar to chromatin remodeling factor CHD3 (PICKLE) [Arabidopsis thaliana] GI:6478518; contains Pfam profiles PF00271: Helicase conserved C-terminal domain, PF00176: SNF2 family N-terminal domain, PF00628: PHD-finger, PF00385: 'chromo' (CHRromatin Organization MOdifier) Length = 2228 Score = 27.1 bits (57), Expect = 7.5 Identities = 10/25 (40%), Positives = 15/25 (60%) Frame = +1 Query: 76 ENGKEYFHVKWKGWSDSENTWEPIE 150 + G + +VKW G + E TWE +E Sbjct: 599 KEGNQEAYVKWTGLAYDECTWESLE 623 >At5g20710.1 68418.m02459 beta-galactosidase, putative / lactase, putative strong similarity to beta-galactosidase precursor (EC 3.2.1.23) (Lactase) SP:P49676 from [Brassica oleracea] Length = 769 Score = 27.1 bits (57), Expect = 7.5 Identities = 10/15 (66%), Positives = 11/15 (73%) Frame = -3 Query: 397 PVWLHNAPLSQLRTV 353 PVWLHN P + RTV Sbjct: 73 PVWLHNMPNMKFRTV 87 >At5g14990.1 68418.m01758 hypothetical protein Length = 666 Score = 27.1 bits (57), Expect = 7.5 Identities = 12/37 (32%), Positives = 20/37 (54%) Frame = +1 Query: 139 EPIENLDNCPAIIKNFLDEEETRFCVKIQKLKEEISF 249 E +EN + A K ++EE R C++I L ++ F Sbjct: 525 ETVENHEKIEANNKRVIEEEVNRACLEISLLYDDFDF 561 >At2g42200.2 68415.m05223 squamosa promoter-binding protein-like 9 (SPL9) identical to squamosa promoter binding protein-like 9 [Arabidopsis thaliana] GI:5931673; contains Pfam profile PF03110: SBP domain Length = 369 Score = 27.1 bits (57), Expect = 7.5 Identities = 10/26 (38%), Positives = 16/26 (61%) Frame = +1 Query: 88 EYFHVKWKGWSDSENTWEPIENLDNC 165 +Y + W + D++N P+ NLDNC Sbjct: 301 QYLNPPWV-FKDNDNDMSPVLNLDNC 325 >At2g25170.1 68415.m03010 chromatin remodeling factor CHD3 (PICKLE) identical to chromatin remodeling factor CHD3 [Arabidopsis thaliana] GI:6478518 Length = 1384 Score = 27.1 bits (57), Expect = 7.5 Identities = 15/48 (31%), Positives = 25/48 (52%) Frame = +1 Query: 49 VEKILGFKYENGKEYFHVKWKGWSDSENTWEPIENLDNCPAIIKNFLD 192 V++IL + E+G+ + VK+K S E WE ++ I+ F D Sbjct: 192 VDRILACREEDGELEYLVKYKELSYDECYWESESDISTFQNEIQRFKD 239 >At1g22060.1 68414.m02759 expressed protein Length = 1999 Score = 27.1 bits (57), Expect = 7.5 Identities = 11/32 (34%), Positives = 20/32 (62%) Frame = +1 Query: 229 LKEEISFGNLLEDNNLIERFTEFEDADLSKIK 324 L + GN +EDNN ++ F E ++ +++IK Sbjct: 280 LGKNSDLGNAIEDNNKLKGFLEDMESSINEIK 311 >At1g04960.1 68414.m00494 expressed protein Length = 317 Score = 27.1 bits (57), Expect = 7.5 Identities = 11/35 (31%), Positives = 20/35 (57%) Frame = +1 Query: 91 YFHVKWKGWSDSENTWEPIENLDNCPAIIKNFLDE 195 Y ++ WKGWS S+ + +N+ + A + LD+ Sbjct: 107 YCYMWWKGWSFSDAMFVTKKNMADAVASVSKQLDD 141 >At5g55650.1 68418.m06939 hypothetical protein Length = 154 Score = 26.6 bits (56), Expect = 9.9 Identities = 19/71 (26%), Positives = 32/71 (45%) Frame = +1 Query: 193 EEETRFCVKIQKLKEEISFGNLLEDNNLIERFTEFEDADLSKIKENLQLKFLSILFLTEK 372 +E+TR C+ E + + +D+ LIE E+A+ + N+ L I E+ Sbjct: 67 KEKTRLCLAEGSQGEGYDYEDDDDDDGLIEIDLVSEEAETIEAMRNINQSRLRIRIEEEQ 126 Query: 373 EEHCGATLVEE 405 EE +EE Sbjct: 127 EEDIDDVNMEE 137 >At3g54570.1 68416.m06038 calmodulin-binding protein-related contains similarity to potato calmodulin-binding protein PCBP GI:17933110 from [Solanum tuberosum] Length = 417 Score = 26.6 bits (56), Expect = 9.9 Identities = 9/37 (24%), Positives = 25/37 (67%) Frame = +1 Query: 229 LKEEISFGNLLEDNNLIERFTEFEDADLSKIKENLQL 339 ++++I GN +++ + + ++++AD K+KE ++L Sbjct: 284 IQDDIILGNAVDEKHESKEAEDWKEADGEKVKERIKL 320 >At3g54070.1 68416.m05978 ankyrin repeat family protein contains ankyrin repeats, Pfam domain PF00023 Length = 574 Score = 26.6 bits (56), Expect = 9.9 Identities = 17/47 (36%), Positives = 23/47 (48%), Gaps = 4/47 (8%) Frame = +2 Query: 188 WMKKKLDSVLK----YKNSKKKSHLATS*KIIISLKDLLNLKMQISA 316 WM +++D K Y NS K HL IS K LNL Q+++ Sbjct: 209 WMLERVDLYRKELALYPNSNKALHLLARKTSAISHKSQLNLFQQVAS 255 >At1g31740.1 68414.m03894 beta-galactosidase, putative / lactase, putative similar to beta-galactosidase precursor [Brassica oleracea] SWISS-PROT:P49676 Length = 786 Score = 26.6 bits (56), Expect = 9.9 Identities = 10/20 (50%), Positives = 12/20 (60%) Frame = -3 Query: 397 PVWLHNAPLSQLRTVLTKIL 338 PVWLHN P + RT T + Sbjct: 147 PVWLHNMPGMEFRTTNTAFM 166 >At1g30270.1 68414.m03702 CBL-interacting protein kinase 23 (CIPK23) identical to CBL-interacting protein kinase 23 [Arabidopsis thaliana] gi|14486386|gb|AAK61494 Length = 482 Score = 26.6 bits (56), Expect = 9.9 Identities = 24/91 (26%), Positives = 41/91 (45%) Frame = +1 Query: 151 NLDNCPAIIKNFLDEEETRFCVKIQKLKEEISFGNLLEDNNLIERFTEFEDADLSKIKEN 330 N++N + +D+E+ I ++K EIS L++ N+I F + SK K Sbjct: 50 NVENGDNVAIKVIDKEKVLKNKMIAQIKREISTMKLIKHPNVIRMF----EVMASKTKIY 105 Query: 331 LQLKFLSILFLTEKEEHCGATLVEETRDILQ 423 L+F++ L +K G +E R Q Sbjct: 106 FVLEFVTGGELFDKISSNGRLKEDEARKYFQ 136 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.317 0.136 0.402 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 10,627,781 Number of Sequences: 28952 Number of extensions: 217600 Number of successful extensions: 804 Number of sequences better than 10.0: 30 Number of HSP's better than 10.0 without gapping: 774 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 804 length of database: 12,070,560 effective HSP length: 76 effective length of database: 9,870,208 effective search space used: 937669760 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.6 bits)
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