Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30166
         (516 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.          21   7.5  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    21   7.5  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       21   7.5  

>DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.
          Length = 495

 Score = 21.0 bits (42), Expect = 7.5
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = +2

Query: 461 PEDSKRPVAEPTETTST 511
           P  +  P  EP+ TTST
Sbjct: 380 PTTTASPTTEPSTTTST 396


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 21.0 bits (42), Expect = 7.5
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = +1

Query: 400 RQLGLRERRVENHLPA 447
           R++ L ERR ++HL A
Sbjct: 230 RRIVLEERRAQSHLEA 245


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 21.0 bits (42), Expect = 7.5
 Identities = 9/33 (27%), Positives = 15/33 (45%)
 Frame = +2

Query: 110 SPYVRESMLDTHSLWSNLANEMQHLDNMMKELS 208
           SP   +S +  HSL+     +  H D+  +  S
Sbjct: 84  SPTQLQSFMQQHSLYLQQQQQQHHQDSSSEHAS 116


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 142,032
Number of Sequences: 438
Number of extensions: 3013
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14354847
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)