Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30163
         (516 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1620.08 |||succinate-CoA ligase |Schizosaccharomyces pombe|c...   153   1e-38
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    26   2.9  
SPAC22E12.14c |sck2||serine/threonine protein kinase Sck2|Schizo...    26   2.9  
SPAC22G7.06c |ura1||carbamoyl-phosphate synthase |Schizosaccharo...    26   3.8  
SPBC215.08c |arg4||carbamoyl-phosphate synthase Arg4|Schizosacch...    26   3.8  
SPCC330.01c |rhp16|SPCC613.13c, rad16|Rad16 homolog Rhp16|Schizo...    25   5.1  
SPBC24C6.09c |||phosphoketolase |Schizosaccharomyces pombe|chr 2...    25   5.1  
SPAC1783.05 |hrp1|chd1|ATP-dependent DNA helicase Hrp1|Schizosac...    25   8.9  
SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyc...    25   8.9  
SPBC405.01 |ade1|min4, SPBC4C3.02c|phosphoribosylamine-glycine l...    25   8.9  
SPBP8B7.26 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    25   8.9  

>SPCC1620.08 |||succinate-CoA ligase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 433

 Score =  153 bits (372), Expect = 1e-38
 Identities = 76/142 (53%), Positives = 101/142 (71%)
 Frame = +1

Query: 91  QVRHLNVHEYISYTLLRDHGIPVPKFNVAKTKDEAIKFATELNTKDIVLKAQVLAGGRGK 270
           Q R+L +HEYIS+ +LR  G+ VP+   A++ +EA K A +L   D+V+KAQVLAGGRGK
Sbjct: 19  QKRNLALHEYISHDILRKFGVDVPRGAPARSGEEAEKVARDLKVTDLVVKAQVLAGGRGK 78

Query: 271 GTFKNGLKGGVRMVNTPEVAGDIAGKMLKQLLVTKQTGAAGRICNMVMVTERKFPRREYY 450
           G F +GL+GGVR V     A   A +M+   L+T+QTG AG+ICN+V V ERKF R+EYY
Sbjct: 79  GQFDSGLRGGVRPVYDATEARMFAEQMIGHKLITRQTGPAGKICNVVYVCERKFIRKEYY 138

Query: 451 VAIMMERSXNGPVIIASSQGGV 516
            AI+M+R    P+I+AS QGGV
Sbjct: 139 FAILMDRENQCPMIVASDQGGV 160


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 26.2 bits (55), Expect = 2.9
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = -2

Query: 341  AISPATSGVLTIRTPPLSPFLKVPFPRPPA 252
            +++PAT+   T+  P  S F  VP P PPA
Sbjct: 1508 SVAPATAPSSTL-PPSQSSFAHVPSPAPPA 1536


>SPAC22E12.14c |sck2||serine/threonine protein kinase
           Sck2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 646

 Score = 26.2 bits (55), Expect = 2.9
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +2

Query: 125 VILYYGTMEFLYPNLMWPKP 184
           V++ +GT EF+ P L W  P
Sbjct: 123 VVVQFGTTEFVSPPLKWESP 142


>SPAC22G7.06c |ura1||carbamoyl-phosphate synthase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2244

 Score = 25.8 bits (54), Expect = 3.8
 Identities = 14/42 (33%), Positives = 22/42 (52%)
 Frame = +1

Query: 133  LLRDHGIPVPKFNVAKTKDEAIKFATELNTKDIVLKAQVLAG 258
            +L D G+  PK+    + DEA KF   +    +V  + VL+G
Sbjct: 1135 MLDDIGVDQPKWKELTSFDEADKFCDTVGYPVLVRPSYVLSG 1176


>SPBC215.08c |arg4||carbamoyl-phosphate synthase
           Arg4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1160

 Score = 25.8 bits (54), Expect = 3.8
 Identities = 14/50 (28%), Positives = 25/50 (50%)
 Frame = +1

Query: 136 LRDHGIPVPKFNVAKTKDEAIKFATELNTKDIVLKAQVLAGGRGKGTFKN 285
           L +  IP+ +     T DEA++ A E  +  +++++    GG G G   N
Sbjct: 215 LNEINIPIAESVAVSTVDEALQ-AAEKVSYPVIIRSAYSLGGLGSGFANN 263


>SPCC330.01c |rhp16|SPCC613.13c, rad16|Rad16 homolog
           Rhp16|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 963

 Score = 25.4 bits (53), Expect = 5.1
 Identities = 18/61 (29%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
 Frame = +1

Query: 58  ASSANKFPSKQQVRHLNVHEYISYTLLRDHGIPVPKFNVAKTKDEAIKFATEL-NTKDIV 234
           ASS+    S+ Q + +  HE   Y L+R H  P  +    K ++EA +   ++   K++V
Sbjct: 297 ASSSASSSSRTQAKSIPSHERTHYRLIRQH--PELEHVWEKLEEEAPREVKQIEQPKELV 354

Query: 235 L 237
           L
Sbjct: 355 L 355


>SPBC24C6.09c |||phosphoketolase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 825

 Score = 25.4 bits (53), Expect = 5.1
 Identities = 18/62 (29%), Positives = 30/62 (48%)
 Frame = +1

Query: 91  QVRHLNVHEYISYTLLRDHGIPVPKFNVAKTKDEAIKFATELNTKDIVLKAQVLAGGRGK 270
           +VR +NV + +  + L  HG+   +F+   TKD  + F    N    V+  + L   R +
Sbjct: 679 RVRVINVTDLMVLSSLHPHGMNPAEFDSLFTKDRHVHF----NYHGYVMDLKALLFDRIQ 734

Query: 271 GT 276
           GT
Sbjct: 735 GT 736


>SPAC1783.05 |hrp1|chd1|ATP-dependent DNA helicase
           Hrp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1373

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +1

Query: 109 VHEYISYTLLRDHGIPVPKFNVAK 180
           V+   SYT + +H IP+PK   +K
Sbjct: 111 VYRDFSYTEIDEHEIPIPKKRKSK 134


>SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1238

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 14/44 (31%), Positives = 21/44 (47%), Gaps = 7/44 (15%)
 Frame = -1

Query: 456  CHVVFPAWELPLGDHDHVAN-------SSCCPCLFCY*ELFKHL 346
            C +V P+ E  +    H+ N       S+C  C   Y ++FKHL
Sbjct: 1040 CDMVLPSEEFEMHLRGHLNNIRLNCEVSNCKKCFSNYEDMFKHL 1083


>SPBC405.01 |ade1|min4, SPBC4C3.02c|phosphoribosylamine-glycine
           ligase |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 788

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 15/48 (31%), Positives = 22/48 (45%)
 Frame = +1

Query: 124 SYTLLRDHGIPVPKFNVAKTKDEAIKFATELNTKDIVLKAQVLAGGRG 267
           S   +  + IP   +      D A  F  +  T D+V+KA  LA G+G
Sbjct: 114 SKDFMHRNNIPTAVYKSFSNYDHAKSFL-DTCTFDVVIKADGLAAGKG 160


>SPBP8B7.26 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 262

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 19/67 (28%), Positives = 29/67 (43%), Gaps = 1/67 (1%)
 Frame = -2

Query: 344 PAISPATSGVLTIRTPPLSPFLKVPFPRPPARTCAFRTMSLVLSSVANLIASS-LVLATL 168
           P   P+      +  PP+ P +    P PP+ + +  + S    S AN  ASS L  A+ 
Sbjct: 126 PGSRPSVLNQEQVPPPPVRPNVMSQMPPPPSYSSS-GSYSQTYQSNANYTASSPLPTASA 184

Query: 167 NLGTGIP 147
           N    +P
Sbjct: 185 NAPLPVP 191


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,262,875
Number of Sequences: 5004
Number of extensions: 48252
Number of successful extensions: 136
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 136
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)