Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30163
         (516 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_53083| Best HMM Match : No HMM Matches (HMM E-Value=.)             113   6e-26
SB_31599| Best HMM Match : No HMM Matches (HMM E-Value=.)              94   7e-20
SB_41020| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.74 
SB_57025| Best HMM Match : Fascin (HMM E-Value=0)                      31   0.74 
SB_215| Best HMM Match : ALG3 (HMM E-Value=0.18)                       30   1.3  
SB_10056| Best HMM Match : RNA_pol_Rpb1_R (HMM E-Value=7.7e-05)        29   2.3  
SB_35329| Best HMM Match : F5_F8_type_C (HMM E-Value=0)                28   5.3  
SB_50637| Best HMM Match : Drf_FH1 (HMM E-Value=1.4)                   27   6.9  
SB_13781| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.2  

>SB_53083| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 291

 Score =  113 bits (273), Expect = 6e-26
 Identities = 61/131 (46%), Positives = 83/131 (63%), Gaps = 4/131 (3%)
 Frame = +1

Query: 37  YGNKILTASSANKFPSKQQVRHLNVHEYISYTLLRDHGIPVPKFNVAKTKDEAIKFATEL 216
           +G  +      N     Q  R+L+VHE+ S  +L+D GI  PK  VA+T ++A + AT L
Sbjct: 19  HGKLLARVLGPNVIAQHQPRRNLSVHEHHSMKILQDAGILTPKGGVARTAEQAYEIATVL 78

Query: 217 NTK----DIVLKAQVLAGGRGKGTFKNGLKGGVRMVNTPEVAGDIAGKMLKQLLVTKQTG 384
                  D+V+KAQVLAGGRGKG F+ GLKGGVR+V + + A ++A +M+ + L TKQTG
Sbjct: 79  GESEVEGDMVVKAQVLAGGRGKGKFEGGLKGGVRIVFSADEAKEVASRMIGKKLFTKQTG 138

Query: 385 AAGRICNMVMV 417
             GRICN V V
Sbjct: 139 ELGRICNEVFV 149


>SB_31599| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 149

 Score = 93.9 bits (223), Expect = 7e-20
 Identities = 47/102 (46%), Positives = 63/102 (61%)
 Frame = +1

Query: 211 ELNTKDIVLKAQVLAGGRGKGTFKNGLKGGVRMVNTPEVAGDIAGKMLKQLLVTKQTGAA 390
           +++  + V+KAQ+LAGGRGKGTF +GL GGV +    +  G    KM    L TKQT   
Sbjct: 30  QVDAAEYVIKAQILAGGRGKGTFDSGLNGGVHLTKLADEVGYFTAKMFGYRLKTKQTPPE 89

Query: 391 GRICNMVMVTERKFPRREYYVAIMMERSXNGPVIIASSQGGV 516
           G +   VMV E     RE Y+AI+M+R   GPVI+AS +GG+
Sbjct: 90  GVMVTRVMVAEAYDIERETYLAILMDREFMGPVIVASPKGGM 131


>SB_41020| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1229

 Score = 30.7 bits (66), Expect = 0.74
 Identities = 40/136 (29%), Positives = 58/136 (42%), Gaps = 7/136 (5%)
 Frame = -2

Query: 434 GNFLSVTMTMLQIRPAAPVCFVTRSCLSIFP--AISPATSGVLTIRTPPLS-PFLKVPFP 264
           GNF S T  ++          V  S  SI P   I+      +T+  P  S P+     P
Sbjct: 55  GNFTSATSVVVDSTTPNATRLVPSSSASISPNVTINMTREANITMILPSTSVPYNTTLIP 114

Query: 263 RPPARTCAFRTMSLVLSSVANL--IASSLVLATLNLGTGIPWSRSRV*LMYSCTF--K*R 96
            P A + A  TMS   S VAN+  + SS+ L   +L T +  S S   L Y+ T      
Sbjct: 115 APNATSTAATTMS--PSYVANMTTLDSSVSLTRSSLSTTLIPSISTSILPYNTTVIATPN 172

Query: 95  TCCLLGNLLAEDAVNI 48
           T  L+ + ++   VN+
Sbjct: 173 TTRLVTSTISSSTVNV 188



 Score = 27.1 bits (57), Expect = 9.2
 Identities = 39/136 (28%), Positives = 55/136 (40%), Gaps = 7/136 (5%)
 Frame = -2

Query: 434 GNFLSVTMTMLQIRPAAPVCFVTRSCLSIFP--AISPATSGVLTIRTPPLS-PFLKVPFP 264
           GNF S T  +           V     SI P   I+       T+  P  S P+     P
Sbjct: 256 GNFTSATSVVFDSTTPNATTLVPSITASISPNVTINMTREANSTMILPSTSVPYNTTLIP 315

Query: 263 RPPARTCAFRTMSLVLSSVANL--IASSLVLATLNLGTGIPWSRSRV*LMYSCTF--K*R 96
            P A + A  TMS   S VAN+  + SS+ L   +L T +  S S   L Y+ T      
Sbjct: 316 APNATSTAATTMS--PSYVANMTTLDSSVSLTRSSLSTTLIPSISTSILPYNTTVIATPN 373

Query: 95  TCCLLGNLLAEDAVNI 48
           T  L+ + ++   VN+
Sbjct: 374 TTRLVTSTISSSTVNV 389


>SB_57025| Best HMM Match : Fascin (HMM E-Value=0)
          Length = 504

 Score = 30.7 bits (66), Expect = 0.74
 Identities = 17/51 (33%), Positives = 23/51 (45%)
 Frame = -2

Query: 335 SPATSGVLTIRTPPLSPFLKVPFPRPPARTCAFRTMSLVLSSVANLIASSL 183
           S A +   T   PP    L  P+PR P  TCA   +  +  +V+   A SL
Sbjct: 162 SEAETATKTETPPPWLRLLPAPYPRTPTTTCALVPVGTINITVSENNARSL 212


>SB_215| Best HMM Match : ALG3 (HMM E-Value=0.18)
          Length = 521

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 22/74 (29%), Positives = 36/74 (48%), Gaps = 1/74 (1%)
 Frame = -2

Query: 371 VTRS-CLSIFPAISPATSGVLTIRTPPLSPFLKVPFPRPPARTCAFRTMSLVLSSVANLI 195
           VTRS C S FP  +P+T  V T  +  ++        RPPA+  + R  +  L++ A  +
Sbjct: 201 VTRSDCCSAFPIRTPSTCSVCTWHSSNIA--------RPPAQPSSLRERTRTLATTATHM 252

Query: 194 ASSLVLATLNLGTG 153
            S +    L++  G
Sbjct: 253 MSYIACTKLHVKRG 266


>SB_10056| Best HMM Match : RNA_pol_Rpb1_R (HMM E-Value=7.7e-05)
          Length = 1960

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 40/136 (29%), Positives = 57/136 (41%), Gaps = 7/136 (5%)
 Frame = -2

Query: 434 GNFLSVTMTMLQIRPAAPVCFVTRSCLSIFP--AISPATSGVLTIRTPPLS-PFLKVPFP 264
           GNF S T  ++          V  S  SI P   I+       T+  P  S P+     P
Sbjct: 55  GNFTSATSVVVDSTTPNATRLVPSSSASISPNVTINMTREANSTMILPSTSVPYNTTLIP 114

Query: 263 RPPARTCAFRTMSLVLSSVANL--IASSLVLATLNLGTGIPWSRSRV*LMYSCTF--K*R 96
            P A + A  TMS   S VAN+  + SS+ L   +L T +  S S   L Y+ T      
Sbjct: 115 APNATSTAATTMS--PSYVANMTTLDSSVSLTRSSLSTTLIPSISTSILPYNTTVIATPN 172

Query: 95  TCCLLGNLLAEDAVNI 48
           T  L+ + ++   VN+
Sbjct: 173 TTRLVTSTISSSTVNV 188


>SB_35329| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
          Length = 660

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = -3

Query: 175 PH*IWVQEFHGPVVEYNLCIHVHSSDGLV 89
           PH +  QE H P+   ++ IH HS +G +
Sbjct: 374 PHHVMRQELHPPITARHVRIHPHSWNGSI 402


>SB_50637| Best HMM Match : Drf_FH1 (HMM E-Value=1.4)
          Length = 309

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 18/72 (25%), Positives = 33/72 (45%)
 Frame = -2

Query: 395 RPAAPVCFVTRSCLSIFPAISPATSGVLTIRTPPLSPFLKVPFPRPPARTCAFRTMSLVL 216
           RP +      R+ L + P   PA +    I  PP +   + P   PP  T +  T+ +++
Sbjct: 17  RPRSARLQARRTGLMVDPP--PAVNNTEEIVAPPSAVNNREPTVIPPHATLSPDTLEMII 74

Query: 215 SSVANLIASSLV 180
           S+V   +  +L+
Sbjct: 75  STVTTRVTDALI 86


>SB_13781| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 314

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = -2

Query: 311 TIRTPPLSPFLKVPFPRPPARTCAFR 234
           T  TP +SP+ K+P P PP R+  +R
Sbjct: 32  TPTTPTISPYKKLP-PPPPYRSIPYR 56


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,107,820
Number of Sequences: 59808
Number of extensions: 371287
Number of successful extensions: 940
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 893
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 939
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1148326654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)