Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV30163
(516 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z68004-1|CAA91981.1| 435|Caenorhabditis elegans Hypothetical pr... 141 2e-34
U41557-3|AAA83304.1| 415|Caenorhabditis elegans Hypothetical pr... 112 1e-25
AY204202-1|AAO39203.1| 339|Caenorhabditis elegans nuclear recep... 28 3.4
AY204201-1|AAO39202.1| 409|Caenorhabditis elegans nuclear recep... 28 3.4
AY204200-1|AAO39201.1| 304|Caenorhabditis elegans nuclear recep... 28 3.4
AF408754-1|AAO27833.1| 418|Caenorhabditis elegans nuclear recep... 28 3.4
AC084155-11|AAQ91893.1| 304|Caenorhabditis elegans Nuclear horm... 28 3.4
AC084155-10|AAG23368.3| 418|Caenorhabditis elegans Nuclear horm... 28 3.4
U55376-2|AAA98004.1| 132|Caenorhabditis elegans C.elegans homeo... 27 6.0
>Z68004-1|CAA91981.1| 435|Caenorhabditis elegans Hypothetical
protein F47B10.1 protein.
Length = 435
Score = 141 bits (342), Expect = 2e-34
Identities = 70/140 (50%), Positives = 95/140 (67%)
Frame = +1
Query: 97 RHLNVHEYISYTLLRDHGIPVPKFNVAKTKDEAIKFATELNTKDIVLKAQVLAGGRGKGT 276
R L +HE+ +L+++ I VP F VA+ + A A + KD V+KAQVLAGGRGKG
Sbjct: 22 RTLMLHEHHGMKILQNYEIKVPPFGVAQDAETAFSEAKRIGGKDYVVKAQVLAGGRGKGR 81
Query: 277 FKNGLKGGVRMVNTPEVAGDIAGKMLKQLLVTKQTGAAGRICNMVMVTERKFPRREYYVA 456
F +GL+GGV++V TP+ AG M+ L+TKQT G+ C VMV +R F RREYY +
Sbjct: 82 FSSGLQGGVQIVFTPDEVKQKAGMMIGANLITKQTDHRGKKCEEVMVCKRLFTRREYYFS 141
Query: 457 IMMERSXNGPVIIASSQGGV 516
I ++R+ NGP++IASSQGGV
Sbjct: 142 ITLDRNTNGPIVIASSQGGV 161
>U41557-3|AAA83304.1| 415|Caenorhabditis elegans Hypothetical
protein C50F7.4 protein.
Length = 415
Score = 112 bits (270), Expect = 1e-25
Identities = 63/155 (40%), Positives = 90/155 (58%), Gaps = 2/155 (1%)
Frame = +1
Query: 58 ASSANKFPSKQQVRHLNVHEYISYTLLRDHGIPVPKFNVAKTKDEAIKFATELNTKDIVL 237
A + +K K Q R LN+ E+ S +L HG V F VA + EA + + V+
Sbjct: 5 AGNLSKSMMKSQRRFLNLQEFQSKEILEKHGCSVQNFVVASNRKEAEEKWMSFGDHEYVV 64
Query: 238 KAQVLAGGRGKGTFKNGLK--GGVRMVNTPEVAGDIAGKMLKQLLVTKQTGAAGRICNMV 411
KAQ+LAGGRGKG F NG K GGV + + A + +M+ + LVTKQT + G + V
Sbjct: 65 KAQILAGGRGKGKFINGTKGIGGVFITKEKDAALEAIDEMIGKRLVTKQTTSEGVRVDKV 124
Query: 412 MVTERKFPRREYYVAIMMERSXNGPVIIASSQGGV 516
M+ E +RE Y+A++M+R NGPV++AS GG+
Sbjct: 125 MIAEGVDIKRETYLAVLMDRESNGPVVVASPDGGM 159
>AY204202-1|AAO39203.1| 339|Caenorhabditis elegans nuclear receptor
NHR-114 protein.
Length = 339
Score = 28.3 bits (60), Expect = 3.4
Identities = 16/48 (33%), Positives = 23/48 (47%)
Frame = -2
Query: 368 TRSCLSIFPAISPATSGVLTIRTPPLSPFLKVPFPRPPARTCAFRTMS 225
T C S A +P + L + PP+SP L P P R C +T++
Sbjct: 108 TSDCSSDEGASTPPSVSPLQLSPPPISPLLFQAAPLKP-RRCILQTLA 154
>AY204201-1|AAO39202.1| 409|Caenorhabditis elegans nuclear receptor
NHR-114 protein.
Length = 409
Score = 28.3 bits (60), Expect = 3.4
Identities = 16/48 (33%), Positives = 23/48 (47%)
Frame = -2
Query: 368 TRSCLSIFPAISPATSGVLTIRTPPLSPFLKVPFPRPPARTCAFRTMS 225
T C S A +P + L + PP+SP L P P R C +T++
Sbjct: 99 TSDCSSDEGASTPPSVSPLQLSPPPISPLLFQAAPLKP-RRCILQTLA 145
>AY204200-1|AAO39201.1| 304|Caenorhabditis elegans nuclear receptor
NHR-114 protein.
Length = 304
Score = 28.3 bits (60), Expect = 3.4
Identities = 16/48 (33%), Positives = 23/48 (47%)
Frame = -2
Query: 368 TRSCLSIFPAISPATSGVLTIRTPPLSPFLKVPFPRPPARTCAFRTMS 225
T C S A +P + L + PP+SP L P P R C +T++
Sbjct: 108 TSDCSSDEGASTPPSVSPLQLSPPPISPLLFQAAPLKP-RRCILQTLA 154
>AF408754-1|AAO27833.1| 418|Caenorhabditis elegans nuclear receptor
protein protein.
Length = 418
Score = 28.3 bits (60), Expect = 3.4
Identities = 16/48 (33%), Positives = 23/48 (47%)
Frame = -2
Query: 368 TRSCLSIFPAISPATSGVLTIRTPPLSPFLKVPFPRPPARTCAFRTMS 225
T C S A +P + L + PP+SP L P P R C +T++
Sbjct: 108 TSDCSSDEGASTPPSVSPLQLSPPPISPLLFQAAPLKP-RRCILQTLA 154
>AC084155-11|AAQ91893.1| 304|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 114, isoform b protein.
Length = 304
Score = 28.3 bits (60), Expect = 3.4
Identities = 16/48 (33%), Positives = 23/48 (47%)
Frame = -2
Query: 368 TRSCLSIFPAISPATSGVLTIRTPPLSPFLKVPFPRPPARTCAFRTMS 225
T C S A +P + L + PP+SP L P P R C +T++
Sbjct: 108 TSDCSSDEGASTPPSVSPLQLSPPPISPLLFQAAPLKP-RRCILQTLA 154
>AC084155-10|AAG23368.3| 418|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 114, isoform a protein.
Length = 418
Score = 28.3 bits (60), Expect = 3.4
Identities = 16/48 (33%), Positives = 23/48 (47%)
Frame = -2
Query: 368 TRSCLSIFPAISPATSGVLTIRTPPLSPFLKVPFPRPPARTCAFRTMS 225
T C S A +P + L + PP+SP L P P R C +T++
Sbjct: 108 TSDCSSDEGASTPPSVSPLQLSPPPISPLLFQAAPLKP-RRCILQTLA 154
>U55376-2|AAA98004.1| 132|Caenorhabditis elegans C.elegans homeobox
protein 1 protein.
Length = 132
Score = 27.5 bits (58), Expect = 6.0
Identities = 18/41 (43%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Frame = -2
Query: 401 QIRPAAPVCFVTR-SCLSIFPAISPATSGVLTIRTPPLSPF 282
QI+P P +T S L + P ISPA S VL + PL+ F
Sbjct: 78 QIQPILPANPITSFSSLLLPPIISPANSAVLQGTSIPLTLF 118
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,535,792
Number of Sequences: 27780
Number of extensions: 275563
Number of successful extensions: 755
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 728
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 752
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 996506972
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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