Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV30163
(516 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g20420.1 68415.m02383 succinyl-CoA ligase [GDP-forming] beta-... 129 1e-30
At5g37890.1 68418.m04565 seven in absentia (SINA) protein, putat... 31 0.61
At4g25750.1 68417.m03707 ABC transporter family protein Bactroce... 28 3.2
At1g64590.1 68414.m07321 short-chain dehydrogenase/reductase (SD... 28 3.2
At5g46600.1 68418.m05737 expressed protein contains Pfam profile... 28 4.3
At4g34610.1 68417.m04916 homeodomain-containing protein similari... 28 4.3
At1g09930.1 68414.m01117 oligopeptide transporter OPT family pro... 28 4.3
At5g52290.1 68418.m06489 hypothetical protein 27 5.7
At5g37870.1 68418.m04561 seven in absentia (SINA) family protein... 27 5.7
At2g37690.1 68415.m04622 phosphoribosylaminoimidazole carboxylas... 27 5.7
At5g07690.1 68418.m00882 myb family transcription factor (MYB29)... 27 7.5
At4g39660.1 68417.m05608 alanine--glyoxylate aminotransferase, p... 27 7.5
At1g63980.1 68414.m07247 D111/G-patch domain-containing protein ... 27 7.5
At1g35515.1 68414.m04409 myb family transcription factor (MYB8) ... 27 7.5
At1g28690.1 68414.m03533 pentatricopeptide (PPR) repeat-containi... 27 7.5
At5g63290.1 68418.m07943 coproporphyrinogen oxidase-related low ... 27 9.9
At5g52490.1 68418.m06512 fibrillarin, putative similar to fibril... 27 9.9
At5g49250.1 68418.m06096 hypothetical protein 27 9.9
>At2g20420.1 68415.m02383 succinyl-CoA ligase [GDP-forming]
beta-chain, mitochondrial, putative / succinyl-CoA
synthetase, beta chain, putative / SCS-beta, putative
identical to SP|O82662 Succinyl-CoA ligase [GDP-forming]
beta-chain, mitochondrial precursor (EC 6.2.1.4)
(Succinyl-CoA synthetase, beta chain) (SCS- beta)
{Arabidopsis thaliana}; similar to SP|O97580
Succinyl-CoA ligase [ADP-forming] beta-chain,
mitochondrial precursor (EC 6.2.1.5) {Sus scrofa};
contains Pfam profiles PF00549: CoA-ligase, PF02222:
ATP-grasp domain
Length = 421
Score = 129 bits (311), Expect = 1e-30
Identities = 71/160 (44%), Positives = 104/160 (65%), Gaps = 3/160 (1%)
Frame = +1
Query: 43 NKILTAS-SANKFPSKQQVRHLNVHEYISYTLLRDHGIPVPKFNVAKTKDEAIKFATEL- 216
NK+++ S S + QQ+R LN+HEY L+ +G+ VPK A + +E K ++
Sbjct: 6 NKLVSRSLSISGKWQNQQLRRLNIHEYQGAELMGKYGVNVPKGVAASSLEEVKKAIQDVF 65
Query: 217 -NTKDIVLKAQVLAGGRGKGTFKNGLKGGVRMVNTPEVAGDIAGKMLKQLLVTKQTGAAG 393
N ++V+K+Q+LAGGRG GTFK+GLKGGV +V E A +IAGKML Q+LVTKQTG G
Sbjct: 66 PNESELVVKSQILAGGRGLGTFKSGLKGGVHIVKRDE-AEEIAGKMLGQVLVTKQTGPQG 124
Query: 394 RICNMVMVTERKFPRREYYVAIMMERSXNGPVIIASSQGG 513
++ + V + E+ E Y +I+++R GP+IIA +GG
Sbjct: 125 KVVSKVYLCEKLSLVNEMYFSIILDRKSAGPLIIACKKGG 164
>At5g37890.1 68418.m04565 seven in absentia (SINA) protein, putative
similar to SIAH1 protein [Brassica napus var. napus]
GI:7657876; contains Pfam profile PF03145: Seven in
absentia protein family
Length = 286
Score = 30.7 bits (66), Expect = 0.61
Identities = 13/30 (43%), Positives = 20/30 (66%), Gaps = 2/30 (6%)
Frame = -1
Query: 459 DCHVVFPAWELPLG--DHDHVANSSCCPCL 376
DC + + A+ +P+ D+ H+A SSCCP L
Sbjct: 50 DCPICYEAFTIPIFQCDNGHLACSSCCPKL 79
>At4g25750.1 68417.m03707 ABC transporter family protein Bactrocera
tryoni membrane transporter (white) gene, PID:g3676298
Length = 577
Score = 28.3 bits (60), Expect = 3.2
Identities = 18/48 (37%), Positives = 27/48 (56%), Gaps = 3/48 (6%)
Frame = -2
Query: 239 FRTMSLVLSSVANLIASSLVLAT--LNLGTGIPWSRSRV*LM-YSCTF 105
+RT L+L+++ + LVL T LN+GTG R R L ++ TF
Sbjct: 313 YRTRQLLLTNILESLVVGLVLGTIYLNIGTGKEGIRKRFGLFAFTLTF 360
>At1g64590.1 68414.m07321 short-chain dehydrogenase/reductase (SDR)
family protein contains INTERPRO family IPR002198
short-chain dehydrogenase/reductase (SDR) superfamily
Length = 334
Score = 28.3 bits (60), Expect = 3.2
Identities = 22/70 (31%), Positives = 31/70 (44%), Gaps = 4/70 (5%)
Frame = +1
Query: 235 LKAQVLAGGRGKGTFKNGL-KGGVRMVNTPEVAGD--IAGKMLKQLLVTK-QTGAAGRIC 402
L +L GK K+ L + GV M G + +LK+++ T QTG GRI
Sbjct: 112 LPLNILINNAGKYAHKHALSEDGVEMTFATNYLGHFLLTKLLLKKMIETAAQTGVQGRIV 171
Query: 403 NMVMVTERKF 432
N+ V F
Sbjct: 172 NVTSVVHSWF 181
>At5g46600.1 68418.m05737 expressed protein contains Pfam profile
PF01027: Uncharacterized protein family UPF0005;
expression supported by MPSS
Length = 539
Score = 27.9 bits (59), Expect = 4.3
Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 5/54 (9%)
Frame = +1
Query: 70 NKFPSKQQVRHLNVHEYISYTLLRDHG-----IPVPKFNVAKTKDEAIKFATEL 216
NKFPS+Q ++ +V YT++ HG I P+ KD ++ A E+
Sbjct: 293 NKFPSQQYIKVGSVLRKFGYTVVALHGCLQTEIQTPRSIRVLFKDPCVRLAGEI 346
>At4g34610.1 68417.m04916 homeodomain-containing protein similaritry
to homeotic protein BEL1, Arabidopsis thaliana,
PIR2:A57632
Length = 532
Score = 27.9 bits (59), Expect = 4.3
Identities = 13/27 (48%), Positives = 20/27 (74%), Gaps = 1/27 (3%)
Frame = +3
Query: 390 RTNLQHGHGHREEVPTQGILRGNH-DG 467
+T HGHG+ EE T+G+++G+H DG
Sbjct: 421 QTKPDHGHGYGEE--TRGMVQGSHMDG 445
>At1g09930.1 68414.m01117 oligopeptide transporter OPT family
protein similar to SP|P40900 Sexual differentiation
process protein isp4 {Schizosaccharomyces pombe};
contains Pfam profile PF03169: OPT oligopeptide
transporter protein
Length = 734
Score = 27.9 bits (59), Expect = 4.3
Identities = 25/78 (32%), Positives = 34/78 (43%), Gaps = 2/78 (2%)
Frame = -2
Query: 407 MLQIRPAAPVCFVTRSCLSIFPAISPATSGVL--TIRTPPLSPFLKVPFPRPPARTCAFR 234
+L RP A VCF T +S+ AIS L ++ PP S FL A T
Sbjct: 483 LLPGRPIANVCFKTYGYISMSQAISFLNDFKLGHYMKIPPRSMFLVQFIGTVIAGTVNIS 542
Query: 233 TMSLVLSSVANLIASSLV 180
+L+SV N+ L+
Sbjct: 543 VAWYLLTSVENICQKELL 560
Score = 27.5 bits (58), Expect = 5.7
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = -1
Query: 231 YVFGIEFCGKLNCLILGFGHIKFGYR 154
+ F + F G L+C++L F + FGYR
Sbjct: 40 WTFRMWFLGLLSCILLSFLNTFFGYR 65
>At5g52290.1 68418.m06489 hypothetical protein
Length = 1569
Score = 27.5 bits (58), Expect = 5.7
Identities = 13/42 (30%), Positives = 23/42 (54%)
Frame = -2
Query: 371 VTRSCLSIFPAISPATSGVLTIRTPPLSPFLKVPFPRPPART 246
+ S L+ FP+++P T+ V+ + L F+K+P RT
Sbjct: 1058 LAESFLTKFPSVNPLTAQVILSSSGSLLEFMKLPHKSKVERT 1099
>At5g37870.1 68418.m04561 seven in absentia (SINA) family protein
similar to SIAH1 protein [Brassica napus var. napus]
GI:7657876; contains Pfam profile PF03145: Seven in
absentia protein family
Length = 281
Score = 27.5 bits (58), Expect = 5.7
Identities = 12/30 (40%), Positives = 19/30 (63%), Gaps = 2/30 (6%)
Frame = -1
Query: 459 DCHVVFPAWELPLGD--HDHVANSSCCPCL 376
DC + + A ++P+ + H+A SSCCP L
Sbjct: 44 DCPICYQALKIPVFQCGNGHLACSSCCPKL 73
>At2g37690.1 68415.m04622 phosphoribosylaminoimidazole carboxylase,
putative / AIR carboxylase, putative similar to
SP|P55195 Phosphoribosylaminoimidazole carboxylase,
chloroplast precursor (EC 4.1.1.21) (AIR carboxylase)
(AIRC) {Vigna aconitifolia}; contains Pfam profiles
PF02222: ATP-grasp domain, PF00731: AIR carboxylase
Length = 642
Score = 27.5 bits (58), Expect = 5.7
Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Frame = +1
Query: 115 EYISYTLLRDHGIPVPKFNVAKTKDEAIKFATELNTKDIVLKAQVLA-GGRGKGTFKN 285
+Y+ HGIP+P+F + + E + A EL +++K++ LA GRG N
Sbjct: 190 KYMQKVHFSQHGIPLPEF-MEISDIEGARKAGELFGYPLMIKSKRLAYDGRGNAVANN 246
>At5g07690.1 68418.m00882 myb family transcription factor (MYB29)
similar to myb transcription factor GI:3941436 from
[Arabidopsis thaliana]
Length = 336
Score = 27.1 bits (57), Expect = 7.5
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = +2
Query: 257 VVEGKVPLRMDLKVEFEWSTHLKLLVI 337
V+ +P R D +++ W+THLK L+I
Sbjct: 91 VIARHLPKRTDNEIKNYWNTHLKKLLI 117
>At4g39660.1 68417.m05608 alanine--glyoxylate aminotransferase,
putative / beta-alanine-pyruvate aminotransferase,
putative / AGT, putative similar to SP|Q64565
Alanine--glyoxylate aminotransferase 2, mitochondrial
precursor (EC 2.6.1.44) (AGT 2) (Beta-alanine-pyruvate
aminotransferase) {Rattus norvegicus}; contains Pfam
profile PF00202: aminotransferase, class III
Length = 476
Score = 27.1 bits (57), Expect = 7.5
Identities = 21/70 (30%), Positives = 34/70 (48%)
Frame = +1
Query: 220 TKDIVLKAQVLAGGRGKGTFKNGLKGGVRMVNTPEVAGDIAGKMLKQLLVTKQTGAAGRI 399
T+D+V +A G G NGL G +V TPE+A +A K+L +AG +
Sbjct: 308 TQDVVPDIVTMAKGIG-----NGLPLGA-VVTTPEIASVLASKILFNTFGGNPVCSAGGL 361
Query: 400 CNMVMVTERK 429
+ ++ + K
Sbjct: 362 AVLNVIDKEK 371
>At1g63980.1 68414.m07247 D111/G-patch domain-containing protein
contains Pfam profile PF01585: G-patch domain
Length = 391
Score = 27.1 bits (57), Expect = 7.5
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = +1
Query: 232 VLKAQVLAGGRGKGTFKNGLKGGVRMVNTPEVAG 333
++K+ G G G K G+KG VR+ N + +G
Sbjct: 22 LMKSMGWEEGEGLGKDKQGIKGYVRVTNKQDTSG 55
>At1g35515.1 68414.m04409 myb family transcription factor (MYB8)
similar to DNA-binding protein GB:AAA98761 GI:1020155
from [Arabidopsis thaliana]
Length = 212
Score = 27.1 bits (57), Expect = 7.5
Identities = 9/23 (39%), Positives = 17/23 (73%)
Frame = +2
Query: 257 VVEGKVPLRMDLKVEFEWSTHLK 325
++ GK+P R D +++ W+TH+K
Sbjct: 91 LIAGKLPGRTDNEIKNYWNTHIK 113
>At1g28690.1 68414.m03533 pentatricopeptide (PPR) repeat-containing
protein contains six TIGRFAM TIGR00756:
pentatricopeptide repeat domains; contains five Pfam
PF01535: PPR repeats
Length = 520
Score = 27.1 bits (57), Expect = 7.5
Identities = 14/40 (35%), Positives = 21/40 (52%)
Frame = +1
Query: 46 KILTASSANKFPSKQQVRHLNVHEYISYTLLRDHGIPVPK 165
+IL ++ + FP KQ V L+ +YI+ L P PK
Sbjct: 12 RILPSNHYSTFPLKQNVSSLSPAKYIAGALQEHINSPAPK 51
>At5g63290.1 68418.m07943 coproporphyrinogen oxidase-related low
similarity to coproporphyrinogen III oxidase from
Geobacillus stearothermophilus [GI:2104798]; contains
Pfam profile PF04055: radical SAM domain protein
Length = 484
Score = 26.6 bits (56), Expect = 9.9
Identities = 13/41 (31%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Frame = -2
Query: 329 ATSGVLTI-RTPPLSPFLKVPFPRPPARTCAFRTMSLVLSS 210
A++ + T+ + PP S ++ +PF R C F ++L +SS
Sbjct: 44 ASTNLTTLHKGPPTSAYVHLPFCRKRCHYCDFPILALGMSS 84
>At5g52490.1 68418.m06512 fibrillarin, putative similar to
fibrillarin from {Xenopus laevis} SP|P22232, {Mus
musculus} SP|P35550, {Homo sapiens} SP|P22087
Length = 292
Score = 26.6 bits (56), Expect = 9.9
Identities = 16/40 (40%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Frame = +1
Query: 259 GRGKGTFKNGLKGGVRMVNTP-EVAGDIAGKMLKQLLVTK 375
GR K G+KGG +++ TP AG K LVTK
Sbjct: 43 GRVKSESDGGIKGGSKVLVTPHRHAGVFVAKSKADALVTK 82
>At5g49250.1 68418.m06096 hypothetical protein
Length = 200
Score = 26.6 bits (56), Expect = 9.9
Identities = 23/75 (30%), Positives = 31/75 (41%), Gaps = 4/75 (5%)
Frame = -2
Query: 392 PAAPVCFVTRSC----LSIFPAISPATSGVLTIRTPPLSPFLKVPFPRPPARTCAFRTMS 225
P + FV + C +SIF I + R P S FLK P P RT R +
Sbjct: 83 PLSSSLFVFKHCTLFIISIFQTICFIVFAAIDRRDPHSSWFLKP--PSPDYRTIVSRILG 140
Query: 224 LVLSSVANLIASSLV 180
+VL V L + +
Sbjct: 141 IVLLWVMKLAPARFI 155
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,974,217
Number of Sequences: 28952
Number of extensions: 262891
Number of successful extensions: 878
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 828
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 875
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 937669760
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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