Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30162
         (516 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle pr...    97   9e-23
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             25   0.35 
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    22   4.3  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    21   5.7  
AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phospha...    21   5.7  
AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.        21   7.5  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     21   10.0 
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    21   10.0 

>EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle
           protein protein.
          Length = 138

 Score = 97.1 bits (231), Expect = 9e-23
 Identities = 45/90 (50%), Positives = 64/90 (71%)
 Frame = +2

Query: 29  EINPDGSYTYFYETNNGIAAQEQGVPRNLGGNPPAVPVVAQGSFSWTSPEGVPISVNYVA 208
           E+N DG+Y   +ET+NGI+ QE G P+ +       PVV+QGS S+T+P+G  +S+ YVA
Sbjct: 35  EVNFDGNYINNFETSNGISHQESGQPKQVDNE---TPVVSQGSDSYTAPDGQQVSITYVA 91

Query: 209 DENGYQPTGNAIPTSPPVPEQIARALAYIA 298
           DENG+Q  G+ IPT+PP+P +I RAL + A
Sbjct: 92  DENGFQVQGSHIPTAPPIPPEIQRALEWNA 121


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 25.4 bits (53), Expect = 0.35
 Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
 Frame = +2

Query: 173  PEGVP-ISVNYVADENGYQPTGNAIPTSPPVPEQIARA 283
            PE VP + ++    + G    G+   TSPP P  I+RA
Sbjct: 1369 PERVPTVDLSPSPSDRGRNDDGSDRLTSPPTPLSISRA 1406


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 21.8 bits (44), Expect = 4.3
 Identities = 8/21 (38%), Positives = 9/21 (42%)
 Frame = +1

Query: 244 PHFPTSA*ADRSCSCLHRQEH 306
           P  PT    D  C+ LH   H
Sbjct: 455 PQLPTEESVDALCNTLHHWHH 475


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.4 bits (43), Expect = 5.7
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = -1

Query: 168 VQENEPCATTGTAGGFPPRLRGTPCS 91
           V ++E  + T TAG FP  +  T  S
Sbjct: 714 VSKHEEVSRTSTAGQFPTNVATTVTS 739


>AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phosphate
           dehydrogenase protein.
          Length = 363

 Score = 21.4 bits (43), Expect = 5.7
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = +2

Query: 8   ETVKFGNEINPDGSYTYFYET 70
           E +KF N   P G  T F+E+
Sbjct: 236 EIIKFVNIFFPGGKKTTFFES 256


>AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.
          Length = 200

 Score = 21.0 bits (42), Expect = 7.5
 Identities = 10/35 (28%), Positives = 15/35 (42%)
 Frame = +2

Query: 137 PVVAQGSFSWTSPEGVPISVNYVADENGYQPTGNA 241
           P  A    S ++      +VNY    N   PTG++
Sbjct: 34  PATASLESSLSAAAVAAAAVNYAQQHNSPSPTGSS 68


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 20.6 bits (41), Expect = 10.0
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = +2

Query: 14  VKFGNEINPDGSYTYFY 64
           V+FG + +P+G Y   Y
Sbjct: 433 VRFGRKADPNGDYIRRY 449


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 20.6 bits (41), Expect = 10.0
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = -2

Query: 143 RREQQGGFHQGYVELPVLGQ 84
           R++QQ   HQG V  P+  Q
Sbjct: 224 RQQQQAQQHQGVVTSPLSQQ 243


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 154,127
Number of Sequences: 438
Number of extensions: 4103
Number of successful extensions: 9
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14354847
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)